Rmu_co8173580.1_g000001

Protamine P1 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8173580.1
OG0013294
Physical Location & Seq
Forward (+)
72 .. 676
605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8173580.1_g000001.1.cds

Sequence Viewer

Length: 605 bp
atgaagctacccgcgaagcccatatcgagtccgggtcggagcgacaagttcccgccgccgttgatgaggtttctgaggagcaatgtcgggagcaaaagccgaggtcggttacgtgcaagtccgatgttcgtgaggaagaagaacacgaccgccgtcgaaacacaagagccgtcgtcgccgaaagtgacctgcatgggccaggttcgggtcaggcggtcgtcctccgcggcttgttcgcgacccggacggggaagaagtgccggagctccgacccggaaacggttcgggtggatccaaaaagctgtgttctgcagcgattttcccgggaaaatcaagcccaagtcttgcagacacctctggcggaaatgggttccgttttttcaagttgggttttgcaccagagttcaaatcgaaaaagacccaccaaaagttgagacccaatttggggaagcaactgatgggttttgttcaggtgatgatgaagaagaagaagaagaaccagagtttgaaagaaaagccaaggcttttgctgcttctagcttttcgccacccaagaacgctttgctcttaactcgatgcagatctgcgccgtacaggtcgtcttc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

22.61

Weight (kDa)

10.32

Isoelectric Point (pI)

72.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37100 AT5G03110
fragaria_vesca FvH4_6g15510
malus_domestica MD04G1102600.v1.1 MD12G1122400.v1.1
prunus_persica Prupe.6G240400_v2.0.a1
pyrus_communis pycom12g12120
rosa_chinensis RchiOBHm_Chr3g0469011
rosa_laevigata RLG00000024390
rosa_multiflora Rmu_co8173580.1_g000001 Rmu_sc0037667.1_g000001
rosa_roxburghii Rroxscaffold_2G00112190 Rroxscaffold_6G00412370
rosa_rugosa Rorug03G0098400
rosa_samantha Rh3AG147900 Rh3BG170500 Rh3DG204500
rosa_wichuraiana Rw3G013930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 197
AccII CGCG 3 cut(s) 14, 227, 238
AciI CCGC 8 cut(s) 12, 53, 56, 150, 214, 225, 227, 361
AclWI GGATC 2 cut(s) 286, 299
AfaI GTAC 1 cut(s) 593
AfiI CCNNNNNNNGG 5 cut(s) 205, 248, 279, 444, 445
AgsI TTSAA 3 cut(s) 383, 407, 509
AjnI CCWGG 1 cut(s) 198
AluBI AGCT 4 cut(s) 7, 266, 302, 540
AluI AGCT 4 cut(s) 7, 266, 302, 540
Alw21I GWGCWC 1 cut(s) 268
Alw26I GTCTC 1 cut(s) 428
AlwI GGATC 2 cut(s) 286, 299
Ama87I CYCGRG 1 cut(s) 323
AoxI GGCC 1 cut(s) 196
ApeKI GCWGC 2 cut(s) 312, 530
Asp700I GAANNNNTTC 1 cut(s) 281
AspLEI GCGC 1 cut(s) 589
AspS9I GGNCC 1 cut(s) 196
AsuC2I CCSGG 5 cut(s) 33, 243, 274, 324, 325
AsuHPI GGTGA 1 cut(s) 485
AvaI CYCGRG 1 cut(s) 323
BamHI GGATCC 1 cut(s) 291
BanII GRGCYC 1 cut(s) 268
BbsI GAAGAC 1 cut(s) 594
Bbv12I GWGCWC 1 cut(s) 268
BbvI GCAGC 2 cut(s) 324, 517
BccI CCATC 1 cut(s) 452
BceAI ACGGC 4 cut(s) 43, 137, 154, 574
BciT130I CCWGG 1 cut(s) 200
BcnI CCSGG 5 cut(s) 33, 243, 274, 324, 325
BcoDI GTCTC 1 cut(s) 428
BfaI CTAG 1 cut(s) 537
BfmI CTRYAG 1 cut(s) 310
BfuAI ACCTGC 1 cut(s) 197
BglII AGATCT 1 cut(s) 581
BisI GCNGC 4 cut(s) 56, 228, 313, 531
BlsI GCNGC 4 cut(s) 57, 229, 314, 532
Bme1390I CCNGG 6 cut(s) 33, 200, 243, 274, 324, 325
BmeT110I CYCGRG 1 cut(s) 323
BmgT120I GGNCC 1 cut(s) 196
BmiI GGNNCC 2 cut(s) 293, 372
BmrFI CCNGG 6 cut(s) 33, 200, 243, 274, 324, 325
BmsI GCATC 1 cut(s) 566
BoxI GACNNNNGTC 1 cut(s) 152
BpiI GAAGAC 1 cut(s) 594
BpuMI CCSGG 5 cut(s) 33, 243, 274, 324, 325
BsaAI YACGTR 1 cut(s) 113
BsaBI GATNNNNATC 1 cut(s) 580
BsaI GGTCTC 1 cut(s) 428
BsaJI CCNNGG 4 cut(s) 100, 225, 323, 519
Bsc4I CCNNNNNNNGG 5 cut(s) 205, 248, 279, 444, 445
Bse3DI GCAATG 1 cut(s) 88
Bse8I GATNNNNATC 1 cut(s) 580
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 4 cut(s) 100, 225, 323, 519
BseJI GATNNNNATC 1 cut(s) 580
BseLI CCNNNNNNNGG 5 cut(s) 205, 248, 279, 444, 445
BseMI GCAATG 1 cut(s) 88
BseMII CTCAG 1 cut(s) 65
BseRI GAGGAG 1 cut(s) 91
BseXI GCAGC 2 cut(s) 324, 517
Bsh1236I CGCG 3 cut(s) 14, 227, 238
Bsh1285I CGRYCG 2 cut(s) 150, 218
BshFI GGCC 1 cut(s) 198
BsiEI CGRYCG 2 cut(s) 150, 218
BsiHKAI GWGCWC 1 cut(s) 268
BsiHKCI CYCGRG 1 cut(s) 323
BsiSI CCGG 5 cut(s) 32, 243, 261, 274, 324
BslI CCNNNNNNNGG 5 cut(s) 205, 248, 279, 444, 445
BsmAI GTCTC 1 cut(s) 428
BsnI GGCC 1 cut(s) 198
Bso31I GGTCTC 1 cut(s) 428
BsoBI CYCGRG 1 cut(s) 323
Bsp1286I GDGCHC 1 cut(s) 268
Bsp143I GATC 2 cut(s) 291, 581
Bsp68I TCGCGA 1 cut(s) 238
BspACI CCGC 8 cut(s) 12, 53, 56, 150, 214, 225, 227, 361
BspANI GGCC 1 cut(s) 198
BspCNI CTCAG 1 cut(s) 66
BspFNI CGCG 3 cut(s) 14, 227, 238
BspLI GGNNCC 2 cut(s) 293, 372
BspMAI CTGCAG 1 cut(s) 314
BspMI ACCTGC 1 cut(s) 197
BspPI GGATC 2 cut(s) 286, 299
BspTNI GGTCTC 1 cut(s) 428
BsrDI GCAATG 1 cut(s) 88
BssECI CCNNGG 4 cut(s) 100, 225, 323, 519
BssMI GATC 2 cut(s) 291, 581
BssT1I CCWWGG 1 cut(s) 519
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 282
BstBAI YACGTR 1 cut(s) 113
BstDEI CTNAG 1 cut(s) 74
BstDSI CCRYGG 1 cut(s) 225
BstFNI CGCG 3 cut(s) 14, 227, 238
BstHHI GCGC 1 cut(s) 589
BstKTI GATC 2 cut(s) 294, 584
BstMAI GTCTC 1 cut(s) 428
BstMBI GATC 2 cut(s) 291, 581
BstMCI CGRYCG 2 cut(s) 150, 218
BstMWI GCNNNNNNNGC 2 cut(s) 175, 530
BstNI CCWGG 1 cut(s) 200
BstPAI GACNNNNGTC 1 cut(s) 152
BstSCI CCNGG 6 cut(s) 31, 198, 241, 272, 322, 323
BstSFI CTRYAG 1 cut(s) 310
BstUI CGCG 3 cut(s) 14, 227, 238
BstV1I GCAGC 2 cut(s) 324, 517
BstV2I GAAGAC 1 cut(s) 594
BstX2I RGATCY 2 cut(s) 291, 581
BstYI RGATCY 2 cut(s) 291, 581
BsuRI GGCC 1 cut(s) 198
BtgI CCRYGG 1 cut(s) 225
BtuMI TCGCGA 1 cut(s) 238
BveI ACCTGC 1 cut(s) 197
CfoI GCGC 1 cut(s) 589
Cfr13I GGNCC 1 cut(s) 196
Cfr42I CCGCGG 1 cut(s) 228
Cfr9I CCCGGG 1 cut(s) 323
Csp6I GTAC 1 cut(s) 592
CviAII CATG 1 cut(s) 193
CviQI GTAC 1 cut(s) 592
DdeI CTNAG 1 cut(s) 74
DpnI GATC 2 cut(s) 293, 583
DpnII GATC 2 cut(s) 291, 581
EciI GGCGGA 1 cut(s) 376
Ecl136II GAGCTC 1 cut(s) 266
Eco130I CCWWGG 1 cut(s) 519
Eco24I GRGCYC 1 cut(s) 268
Eco31I GGTCTC 1 cut(s) 428
Eco53kI GAGCTC 1 cut(s) 266
Eco88I CYCGRG 1 cut(s) 323
EcoICRI GAGCTC 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 519
EcoT38I GRGCYC 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 519
FaeI CATG 1 cut(s) 196
FaiI YATR 2 cut(s) 23, 194
FatI CATG 1 cut(s) 192
FauI CCCGC 2 cut(s) 19, 60
Fnu4HI GCNGC 4 cut(s) 56, 228, 313, 531
FriOI GRGCYC 1 cut(s) 268
Fsp4HI GCNGC 4 cut(s) 56, 228, 313, 531
FspBI CTAG 1 cut(s) 537
GlaI GCGC 1 cut(s) 588
GluI GCNGC 4 cut(s) 56, 228, 313, 531
HaeIII GGCC 1 cut(s) 198
HapII CCGG 5 cut(s) 32, 243, 261, 274, 324
HhaI GCGC 1 cut(s) 589
Hin1II CATG 1 cut(s) 196
Hin6I GCGC 1 cut(s) 587
HinP1I GCGC 1 cut(s) 587
HinfI GANTC 1 cut(s) 28
HpaII CCGG 5 cut(s) 32, 243, 261, 274, 324
HphI GGTGA 1 cut(s) 485
Hpy188I TCNGA 4 cut(s) 39, 75, 123, 270
Hpy188III TCNNGA 3 cut(s) 88, 130, 237
Hpy99I CGWCG 3 cut(s) 158, 175, 178
HpyCH4III ACNGT 1 cut(s) 282
HpyCH4IV ACGT 1 cut(s) 112
HpyCH4V TGCA 6 cut(s) 116, 192, 312, 348, 396, 579
HpyF10VI GCNNNNNNNGC 2 cut(s) 175, 530
HpyF3I CTNAG 1 cut(s) 74
HpySE526I ACGT 1 cut(s) 112
Hsp92II CATG 1 cut(s) 196
HspAI GCGC 1 cut(s) 587
KspI CCGCGG 1 cut(s) 228
Kzo9I GATC 2 cut(s) 291, 581
LmnI GCTCC 5 cut(s) 39, 78, 90, 263, 271
Lsp1109I GCAGC 2 cut(s) 324, 517
LweI GCATC 1 cut(s) 566
MaeI CTAG 1 cut(s) 537
MaeII ACGT 1 cut(s) 112
MaeIII GTNAC 2 cut(s) 108, 184
MalI GATC 2 cut(s) 293, 583
MboI GATC 2 cut(s) 291, 581
MboII GAAGA 9 cut(s) 148, 151, 264, 494, 497, 500, 503, 506, 594
MflI RGATCY 2 cut(s) 291, 581
MhlI GDGCHC 1 cut(s) 268
MluCI AATT 1 cut(s) 440
MlyI GAGTC 1 cut(s) 37
MmeI TCCRAC 2 cut(s) 17, 293
MnlI CCTC 6 cut(s) 60, 69, 95, 126, 232, 365
MroXI GAANNNNTTC 1 cut(s) 281
MseI TTAA 1 cut(s) 569
MspA1I CMGCKG 1 cut(s) 227
MspI CCGG 5 cut(s) 32, 243, 261, 274, 324
MspR9I CCNGG 6 cut(s) 33, 200, 243, 274, 324, 325
MvaI CCWGG 1 cut(s) 200
MvnI CGCG 3 cut(s) 14, 227, 238
MwoI GCNNNNNNNGC 2 cut(s) 175, 530
NciI CCSGG 5 cut(s) 33, 243, 274, 324, 325
NdeII GATC 2 cut(s) 291, 581
NlaIII CATG 1 cut(s) 196
NlaIV GGNNCC 2 cut(s) 293, 372
NmeAIII GCCGAG 1 cut(s) 125
NmuCI GTSAC 1 cut(s) 184
NruI TCGCGA 1 cut(s) 238
PdmI GAANNNNTTC 1 cut(s) 281
PkrI GCNGC 4 cut(s) 57, 229, 314, 532
PleI GAGTC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 36
Ppu21I YACGTR 1 cut(s) 113
PshAI GACNNNNGTC 1 cut(s) 152
Psp124BI GAGCTC 1 cut(s) 268
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 2 cut(s) 293, 372
PspPI GGNCC 1 cut(s) 196
PstI CTGCAG 1 cut(s) 314
PsuI RGATCY 2 cut(s) 291, 581
RruI TCGCGA 1 cut(s) 238
RsaI GTAC 1 cut(s) 593
RsaNI GTAC 1 cut(s) 592
SacI GAGCTC 1 cut(s) 268
SacII CCGCGG 1 cut(s) 228
SaqAI TTAA 1 cut(s) 569
SatI GCNGC 4 cut(s) 56, 228, 313, 531
Sau3AI GATC 2 cut(s) 291, 581
Sau96I GGNCC 1 cut(s) 196
SchI GAGTC 1 cut(s) 37
ScrFI CCNGG 6 cut(s) 33, 200, 243, 274, 324, 325
SduI GDGCHC 1 cut(s) 268
SfaNI GCATC 1 cut(s) 566
SfcI CTRYAG 1 cut(s) 310
Sfr303I CCGCGG 1 cut(s) 228
SgrBI CCGCGG 1 cut(s) 228
SmaI CCCGGG 1 cut(s) 325
Sse9I AATT 1 cut(s) 440
SsiI CCGC 8 cut(s) 12, 53, 56, 150, 214, 225, 227, 361
SspMI CTAG 1 cut(s) 537
SstI GAGCTC 1 cut(s) 268
StyD4I CCNGG 6 cut(s) 31, 198, 241, 272, 322, 323
StyI CCWWGG 1 cut(s) 519
TaaI ACNGT 1 cut(s) 282
TaiI ACGT 1 cut(s) 115
TaqI TCGA 4 cut(s) 26, 156, 411, 574
TasI AATT 1 cut(s) 440
TauI GCSGC 2 cut(s) 58, 230
Tru1I TTAA 1 cut(s) 569
Tru9I TTAA 1 cut(s) 569
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 2 cut(s) 312, 530
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 2 cut(s) 17, 495
TspGWI ACGGA 1 cut(s) 363
TspMI CCCGGG 1 cut(s) 323
XmaI CCCGGG 1 cut(s) 323
XmnI GAANNNNTTC 1 cut(s) 281
XspI CTAG 1 cut(s) 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.