FvH4_6g15510

Protamine P1 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013294
Physical Location & Seq
Forward (+)
9628888 .. 9630781
1894 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g15510.t1

Sequence Viewer

Length: 1023 bp
ATGAAGCTACCCGCGAAGTCCATATCGAGTCCGGGTCGGAGCGACAAGTTCCCTCCGCCGTTGATGAGGTTTCTGCGGAGCAATGTCGGGAGCAAAAGCCGAGCTCGGATACGTTCGAGTCCGATGTTTGTGAGGAAGAAGAACACGACCGCTGTCGAAACACAAGAACCTTCGTCGCCAAAAGTGACCTGCATGGGCCAGGTCCGTGTCCGGCGGGCGTCCTCCTCCGCGGCTTCTTCGCGGTCCGGAAGGGTGACACGGGCCGGAGCTCCGACCCGGAAACGGTTCGGGTGGATCCAAAACGCCATGTTCTGCAGCGACTTTCCGGGGAAAATCAAGCCCAAGAGTTCTTGCGGAGACCTCTGGCGGAAATGGGTTCCGTTTTTCCAAGCTGGGTTTTGCTCTAAAGCTCAGATTGAAGAAGAACCAGTGAAAATCGAGACCCGATTTGGGGAAGAAGCCCAAAGGTCTTGTTCAGATGAAGAAGAACAAGAAGAACAAGAATTTGAAAGAAAAGCCAAGGCTTTTGCTTTTGCTGCTTCTTCATCTTCGCCGCCGAAGAACGCTTTGCTATTGACTCGATGCAGATCTGCGCCGTACAGGTCGTCTTCTTTAGCTTGTAGATTTTGGGGCTCACCAAACAGAGCTGAAGAAGAAACAGGGGAAGAAGAAAAAGAAGAAGAACAGAGCAAAACAGGGGAAGAAGAACAAGAACAGAGCATAGAAAATGGGAGCGAAAATGAGAGACCCACATCGGAAAGAGAGTCCATTTCGGATCAAGAATCGAGAACTGAGAAGCAAAATGAGGAAAAGATTGAATTTTTCAAGGGATTGGAAAACTCAATCAGAGAGAGAATGGCCAAGTCTGCAAGCATTGAGGATTTGAAAGAAGGGGAGTTTGGATCAGAGTCTGCTCGGCCTTTGATTCTCACAAGGTGTAAATCAGAACCAGCAAGAACAGCAGCAGAGAAGCTCGACCCAGATTCCTTGATTCATTCCCACCAAGTGTTTGTGATTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

341

Amino Acids

38.28

Weight (kDa)

8.55

Isoelectric Point (pI)

80.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37100 AT5G03110
fragaria_vesca FvH4_6g15510
malus_domestica MD04G1102600.v1.1 MD12G1122400.v1.1
prunus_persica Prupe.6G240400_v2.0.a1
pyrus_communis pycom12g12120
rosa_chinensis RchiOBHm_Chr3g0469011
rosa_laevigata RLG00000024390
rosa_multiflora Rmu_co8173580.1_g000001 Rmu_sc0037667.1_g000001
rosa_roxburghii Rroxscaffold_2G00112190 Rroxscaffold_6G00412370
rosa_rugosa Rorug03G0098400
rosa_samantha Rh3AG147900 Rh3BG170500 Rh3DG204500
rosa_wichuraiana Rw3G013930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 197
AccII CGCG 3 cut(s) 14, 230, 241
AccIII TCCGGA 1 cut(s) 245
AclWI GGATC 4 cut(s) 289, 302, 783, 910
AcoI YGGCCR 1 cut(s) 858
AcsI RAATTY 2 cut(s) 503, 818
AcuI CTGAAG 1 cut(s) 669
AcyI GRCGYC 1 cut(s) 218
AdeI CACNNNGTG 2 cut(s) 936, 1006
AfaI GTAC 1 cut(s) 599
AfiI CCNNNNNNNGG 3 cut(s) 282, 450, 451
AgsI TTSAA 5 cut(s) 419, 509, 818, 826, 886
AjnI CCWGG 1 cut(s) 198
AjuI GAANNNNNNNTTGG 2 cut(s) 882, 914
AluBI AGCT 8 cut(s) 7, 104, 269, 392, 410, 617, 647, 973
AluI AGCT 8 cut(s) 7, 104, 269, 392, 410, 617, 647, 973
Alw21I GWGCWC 2 cut(s) 106, 271
Alw26I GTCTC 3 cut(s) 351, 434, 739
AlwI GGATC 4 cut(s) 289, 302, 783, 910
AlwNI CAGNNNCTG 1 cut(s) 911
Aor13HI TCCGGA 1 cut(s) 245
AoxI GGCC 4 cut(s) 196, 261, 858, 917
ApeKI GCWGC 3 cut(s) 315, 536, 962
ApoI RAATTY 2 cut(s) 503, 818
AseI ATTAAT 1 cut(s) 1017
Asp700I GAANNNNTTC 1 cut(s) 284
AspLEI GCGC 1 cut(s) 595
AspS9I GGNCC 4 cut(s) 196, 202, 243, 261
AsuC2I CCSGG 3 cut(s) 33, 277, 327
AsuHPI GGTGA 2 cut(s) 265, 627
AvaII GGWCC 2 cut(s) 202, 243
BalI TGGCCA 1 cut(s) 860
BamHI GGATCC 1 cut(s) 294
BanII GRGCYC 3 cut(s) 106, 271, 635
BbsI GAAGAC 1 cut(s) 600
Bbv12I GWGCWC 2 cut(s) 106, 271
BbvI GCAGC 3 cut(s) 327, 523, 974
BceAI ACGGC 2 cut(s) 43, 580
BciT130I CCWGG 1 cut(s) 200
BciVI GTATCC 1 cut(s) 102
BcnI CCSGG 3 cut(s) 33, 277, 327
BcoDI GTCTC 3 cut(s) 351, 434, 739
BfmI CTRYAG 1 cut(s) 313
BfuAI ACCTGC 1 cut(s) 197
BfuI GTATCC 1 cut(s) 102
BglII AGATCT 1 cut(s) 587
BisI GCNGC 5 cut(s) 231, 316, 537, 554, 963
BlsI GCNGC 5 cut(s) 232, 317, 538, 555, 964
Bme1390I CCNGG 4 cut(s) 33, 200, 277, 327
Bme18I GGWCC 2 cut(s) 202, 243
BmgT120I GGNCC 4 cut(s) 196, 202, 243, 261
BmiI GGNNCC 2 cut(s) 296, 378
BmrFI CCNGG 4 cut(s) 33, 200, 277, 327
BmsI GCATC 1 cut(s) 572
BoxI GACNNNNGTC 1 cut(s) 152
BpiI GAAGAC 1 cut(s) 600
BpuMI CCSGG 3 cut(s) 33, 277, 327
BsaBI GATNNNNATC 1 cut(s) 586
BsaHI GRCGYC 1 cut(s) 218
BsaI GGTCTC 3 cut(s) 351, 434, 739
BsaJI CCNNGG 3 cut(s) 228, 326, 519
BsaWI WCCGGW 1 cut(s) 245
Bsc4I CCNNNNNNNGG 3 cut(s) 282, 450, 451
Bse1I ACTGG 1 cut(s) 428
Bse3DI GCAATG 1 cut(s) 88
Bse8I GATNNNNATC 1 cut(s) 586
BseAI TCCGGA 1 cut(s) 245
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 3 cut(s) 228, 326, 519
BseJI GATNNNNATC 1 cut(s) 586
BseLI CCNNNNNNNGG 3 cut(s) 282, 450, 451
BseMI GCAATG 1 cut(s) 88
BseMII CTCAG 2 cut(s) 425, 783
BseNI ACTGG 1 cut(s) 428
BseRI GAGGAG 1 cut(s) 214
BseXI GCAGC 3 cut(s) 327, 523, 974
BseYI CCCAGC 1 cut(s) 392
Bsh1236I CGCG 3 cut(s) 14, 230, 241
Bsh1285I CGRYCG 1 cut(s) 150
BshFI GGCC 4 cut(s) 198, 263, 860, 919
BsiEI CGRYCG 1 cut(s) 150
BsiHKAI GWGCWC 2 cut(s) 106, 271
BsiSI CCGG 6 cut(s) 32, 211, 246, 264, 277, 326
BslI CCNNNNNNNGG 3 cut(s) 282, 450, 451
BsmAI GTCTC 3 cut(s) 351, 434, 739
BsnI GGCC 4 cut(s) 198, 263, 860, 919
Bso31I GGTCTC 3 cut(s) 351, 434, 739
Bsp1286I GDGCHC 3 cut(s) 106, 271, 635
Bsp13I TCCGGA 1 cut(s) 245
Bsp143I GATC 4 cut(s) 294, 587, 775, 902
BspANI GGCC 4 cut(s) 198, 263, 860, 919
BspCNI CTCAG 2 cut(s) 424, 784
BspEI TCCGGA 1 cut(s) 245
BspFNI CGCG 3 cut(s) 14, 230, 241
BspLI GGNNCC 2 cut(s) 296, 378
BspMAI CTGCAG 1 cut(s) 317
BspMI ACCTGC 1 cut(s) 197
BspPI GGATC 4 cut(s) 289, 302, 783, 910
BspTNI GGTCTC 3 cut(s) 351, 434, 739
BsrDI GCAATG 1 cut(s) 88
BsrI ACTGG 1 cut(s) 428
BssECI CCNNGG 3 cut(s) 228, 326, 519
BssMI GATC 4 cut(s) 294, 587, 775, 902
BssNI GRCGYC 1 cut(s) 218
BssT1I CCWWGG 1 cut(s) 519
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 285
BstACI GRCGYC 1 cut(s) 218
BstC8I GCNNGC 2 cut(s) 216, 871
BstDEI CTNAG 2 cut(s) 411, 792
BstDSI CCRYGG 1 cut(s) 228
BstFNI CGCG 3 cut(s) 14, 230, 241
BstHHI GCGC 1 cut(s) 595
BstKTI GATC 4 cut(s) 297, 590, 778, 905
BstMAI GTCTC 3 cut(s) 351, 434, 739
BstMBI GATC 4 cut(s) 294, 587, 775, 902
BstMCI CGRYCG 1 cut(s) 150
BstMWI GCNNNNNNNGC 3 cut(s) 536, 866, 959
BstNI CCWGG 1 cut(s) 200
BstPAI GACNNNNGTC 1 cut(s) 152
BstSCI CCNGG 4 cut(s) 31, 198, 275, 325
BstSFI CTRYAG 1 cut(s) 313
BstUI CGCG 3 cut(s) 14, 230, 241
BstV1I GCAGC 3 cut(s) 327, 523, 974
BstV2I GAAGAC 1 cut(s) 600
BstX2I RGATCY 2 cut(s) 294, 587
BstYI RGATCY 2 cut(s) 294, 587
BsuI GTATCC 1 cut(s) 102
BsuRI GGCC 4 cut(s) 198, 263, 860, 919
BtgI CCRYGG 1 cut(s) 228
BtsIMutI CAGTG 1 cut(s) 435
BveI ACCTGC 1 cut(s) 197
Cac8I GCNNGC 2 cut(s) 216, 871
CaiI CAGNNNCTG 1 cut(s) 911
CfoI GCGC 1 cut(s) 595
Cfr13I GGNCC 4 cut(s) 196, 202, 243, 261
Cfr42I CCGCGG 1 cut(s) 231
CpoI CGGWCCG 1 cut(s) 243
CseI GACGC 1 cut(s) 207
Csp6I GTAC 1 cut(s) 598
CspI CGGWCCG 1 cut(s) 243
CviAII CATG 2 cut(s) 193, 307
CviQI GTAC 1 cut(s) 598
DdeI CTNAG 2 cut(s) 411, 792
DpnI GATC 4 cut(s) 296, 589, 777, 904
DpnII GATC 4 cut(s) 294, 587, 775, 902
DraIII CACNNNGTG 2 cut(s) 936, 1006
EaeI YGGCCR 1 cut(s) 858
EciI GGCGGA 2 cut(s) 45, 382
Ecl136II GAGCTC 2 cut(s) 104, 269
Eco130I CCWWGG 1 cut(s) 519
Eco24I GRGCYC 3 cut(s) 106, 271, 635
Eco31I GGTCTC 3 cut(s) 351, 434, 739
Eco47I GGWCC 2 cut(s) 202, 243
Eco53kI GAGCTC 2 cut(s) 104, 269
Eco57I CTGAAG 1 cut(s) 669
EcoICRI GAGCTC 2 cut(s) 104, 269
EcoRII CCWGG 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 519
EcoT38I GRGCYC 3 cut(s) 106, 271, 635
ErhI CCWWGG 1 cut(s) 519
FaeI CATG 2 cut(s) 196, 310
FaiI YATR 4 cut(s) 23, 194, 308, 722
FatI CATG 2 cut(s) 192, 306
FauI CCCGC 2 cut(s) 19, 207
Fnu4HI GCNGC 5 cut(s) 231, 316, 537, 554, 963
FriOI GRGCYC 3 cut(s) 106, 271, 635
Fsp4HI GCNGC 5 cut(s) 231, 316, 537, 554, 963
GlaI GCGC 1 cut(s) 594
GluI GCNGC 5 cut(s) 231, 316, 537, 554, 963
GsaI CCCAGC 1 cut(s) 396
HaeIII GGCC 4 cut(s) 198, 263, 860, 919
HapII CCGG 6 cut(s) 32, 211, 246, 264, 277, 326
HgaI GACGC 1 cut(s) 207
HhaI GCGC 1 cut(s) 595
Hin1I GRCGYC 1 cut(s) 218
Hin1II CATG 2 cut(s) 196, 310
Hin6I GCGC 1 cut(s) 593
HinP1I GCGC 1 cut(s) 593
HinfI GANTC 9 cut(s) 28, 118, 577, 764, 782, 908, 925, 983, 991
HpaII CCGG 6 cut(s) 32, 211, 246, 264, 277, 326
HphI GGTGA 2 cut(s) 265, 627
Hpy188III TCNNGA 5 cut(s) 88, 246, 439, 779, 786
Hpy99I CGWCG 1 cut(s) 178
HpyAV CCTTC 3 cut(s) 180, 243, 884
HpyCH4III ACNGT 1 cut(s) 285
HpyCH4IV ACGT 1 cut(s) 112
HpyCH4V TGCA 4 cut(s) 192, 315, 585, 869
HpyF10VI GCNNNNNNNGC 3 cut(s) 536, 866, 959
HpyF3I CTNAG 2 cut(s) 411, 792
HpySE526I ACGT 1 cut(s) 112
Hsp92I GRCGYC 1 cut(s) 218
Hsp92II CATG 2 cut(s) 196, 310
HspAI GCGC 1 cut(s) 593
Kpn2I TCCGGA 1 cut(s) 245
KspI CCGCGG 1 cut(s) 231
Kzo9I GATC 4 cut(s) 294, 587, 775, 902
LmnI GCTCC 6 cut(s) 39, 78, 90, 266, 274, 732
Lsp1109I GCAGC 3 cut(s) 327, 523, 974
LweI GCATC 1 cut(s) 572
MaeII ACGT 1 cut(s) 112
MaeIII GTNAC 2 cut(s) 184, 253
MalI GATC 4 cut(s) 296, 589, 777, 904
MboI GATC 4 cut(s) 294, 587, 775, 902
MflI RGATCY 2 cut(s) 294, 587
MhlI GDGCHC 3 cut(s) 106, 271, 635
MlsI TGGCCA 1 cut(s) 860
MluCI AATT 3 cut(s) 503, 818, 1018
MluNI TGGCCA 1 cut(s) 860
MlyI GAGTC 5 cut(s) 37, 127, 571, 773, 917
MmeI TCCRAC 2 cut(s) 17, 296
MnlI CCTC 8 cut(s) 60, 63, 126, 232, 235, 371, 799, 871
Mox20I TGGCCA 1 cut(s) 860
MroI TCCGGA 1 cut(s) 245
MroXI GAANNNNTTC 1 cut(s) 284
MscI TGGCCA 1 cut(s) 860
MseI TTAA 1 cut(s) 1017
Msp20I TGGCCA 1 cut(s) 860
MspA1I CMGCKG 2 cut(s) 152, 230
MspI CCGG 6 cut(s) 32, 211, 246, 264, 277, 326
MspR9I CCNGG 4 cut(s) 33, 200, 277, 327
MvaI CCWGG 1 cut(s) 200
MvnI CGCG 3 cut(s) 14, 230, 241
MwoI GCNNNNNNNGC 3 cut(s) 536, 866, 959
NciI CCSGG 3 cut(s) 33, 277, 327
NdeII GATC 4 cut(s) 294, 587, 775, 902
NlaIII CATG 2 cut(s) 196, 310
NlaIV GGNNCC 2 cut(s) 296, 378
NmeAIII GCCGAG 2 cut(s) 125, 895
NmuCI GTSAC 2 cut(s) 184, 253
PdmI GAANNNNTTC 1 cut(s) 284
PfeI GAWTC 4 cut(s) 782, 925, 983, 991
PkrI GCNGC 5 cut(s) 232, 317, 538, 555, 964
PleI GAGTC 5 cut(s) 36, 126, 571, 772, 916
PpsI GAGTC 5 cut(s) 36, 126, 571, 772, 916
PshAI GACNNNNGTC 1 cut(s) 152
PshBI ATTAAT 1 cut(s) 1017
Psp124BI GAGCTC 2 cut(s) 106, 271
Psp6I CCWGG 1 cut(s) 198
PspFI CCCAGC 1 cut(s) 392
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 2 cut(s) 296, 378
PspPI GGNCC 4 cut(s) 196, 202, 243, 261
PstI CTGCAG 1 cut(s) 317
PstNI CAGNNNCTG 1 cut(s) 911
PsuI RGATCY 2 cut(s) 294, 587
RsaI GTAC 1 cut(s) 599
RsaNI GTAC 1 cut(s) 598
Rsr2I CGGWCCG 1 cut(s) 243
RsrII CGGWCCG 1 cut(s) 243
SacI GAGCTC 2 cut(s) 106, 271
SacII CCGCGG 1 cut(s) 231
SaqAI TTAA 1 cut(s) 1017
SatI GCNGC 5 cut(s) 231, 316, 537, 554, 963
Sau3AI GATC 4 cut(s) 294, 587, 775, 902
Sau96I GGNCC 4 cut(s) 196, 202, 243, 261
SchI GAGTC 5 cut(s) 37, 127, 571, 773, 917
ScrFI CCNGG 4 cut(s) 33, 200, 277, 327
SduI GDGCHC 3 cut(s) 106, 271, 635
SfaNI GCATC 1 cut(s) 572
SfcI CTRYAG 1 cut(s) 313
Sfr303I CCGCGG 1 cut(s) 231
SgrBI CCGCGG 1 cut(s) 231
SinI GGWCC 2 cut(s) 202, 243
Sse9I AATT 3 cut(s) 503, 818, 1018
SstI GAGCTC 2 cut(s) 106, 271
StyD4I CCNGG 4 cut(s) 31, 198, 275, 325
StyI CCWWGG 1 cut(s) 519
TaaI ACNGT 1 cut(s) 285
TaiI ACGT 1 cut(s) 115
TaqI TCGA 7 cut(s) 26, 116, 156, 438, 580, 785, 975
TasI AATT 3 cut(s) 503, 818, 1018
TauI GCSGC 2 cut(s) 233, 556
TfiI GAWTC 4 cut(s) 782, 925, 983, 991
Tru1I TTAA 1 cut(s) 1017
Tru9I TTAA 1 cut(s) 1017
TscAI CASTG 1 cut(s) 435
TseFI GTSAC 2 cut(s) 184, 253
TseI GCWGC 3 cut(s) 315, 536, 962
Tsp45I GTSAC 2 cut(s) 184, 253
TspDTI ATGAA 4 cut(s) 17, 495, 534, 983
TspGWI ACGGA 2 cut(s) 194, 369
TspRI CASTG 1 cut(s) 435
VpaK11BI GGWCC 2 cut(s) 202, 243
VspI ATTAAT 1 cut(s) 1017
XapI RAATTY 2 cut(s) 503, 818
XmnI GAANNNNTTC 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.