Rh3DG204500

Protamine P1 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0013294
Physical Location & Seq
Reverse (-)
18687617 .. 18689697
2081 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG204500.1

Sequence Viewer

Length: 1017 bp
ATGAAGCTACCCGCGAAGCCCATATCGAGTCCGGGTCGGAGCGACAAGTTCCCGCCGCCGTTGATGAGGTTTCTGAGGAGCAATGTCGGGACCAAAAGCCGAGGTCGGTTACGTGCGAGTCCGATGTTCGTGAGGAAGAAGAACACGACCGCCGTCGAAACACAAGAGCCGTCGTCGCCGAAAGTTACCTGCATGGGCCAGGTTAGGGTCAGGCGGTCGTCCTCCGCGGCTTGTTCGCGACCCGGACGGGGAAGAAGTGCCGGAGCTCCGACCCGGAAACGGTTCGGGTGGATCCAAAACGCCGTGTTCTGCAGCGATTTTCCCGGGAAAATCAAGCCCAAGTCTTGCAGACACCTCTGGCGGAAATGGGTTCCGTTTTTTCAAGTTGGGTTTTGCACCAGAGTTCAAATCGAAAAAGACCCACCAAAAGTTGAGACCCAATTTGGGGAAGCAATTGATGGGTTTCGTTCAGGTGATGATGAAGAAGAAGAAGAAGAAGAACCAGAATTTGAAAGAAAAGCCAAGGCTTTTGCTGCTTCTAGCTTTTCGCCACCCAAGAACGCTTTGCTCTTAACTCGATGCAGATCTGCGCCGTACAGGTCGTCTTCTTTGGCTAGTAGATTTTGGGGCTCACCAGACAGAGCTAAAGAAGAAACAGGGGAAGAAGAACAGAGCAAAACAGGGGAAGCAGAACAGAGCATCGAGCCCCAAAACAGAGAAAATGGCAGCGAAAATAAGAGACCCACATCGGAAAGAGAGTCCATTTCGAAACAAGAATCGAGAACTGAGAAACAAAATGAAGAAAAGATGGAATTTTTCAAGGGATTGGAAAACTCAATCAGAGAAAGAATGGCCAAATCTGCGAGCATTGAATATTCGAATGAAGTGGAGTTTGGATCAGATTCTGCTCGGCCTATGATTCTCACAAGGTGTAAGTCAGAACCAGCAAGAACAGCAGCAGAGAAGCTCGACCCAGATTCGTTGATTCATTCCCACCAATTGTTTGTGATTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

338

Amino Acids

38.19

Weight (kDa)

9.47

Isoelectric Point (pI)

72.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37100 AT5G03110
fragaria_vesca FvH4_6g15510
malus_domestica MD04G1102600.v1.1 MD12G1122400.v1.1
prunus_persica Prupe.6G240400_v2.0.a1
pyrus_communis pycom12g12120
rosa_chinensis RchiOBHm_Chr3g0469011
rosa_laevigata RLG00000024390
rosa_multiflora Rmu_co8173580.1_g000001 Rmu_sc0037667.1_g000001
rosa_roxburghii Rroxscaffold_2G00112190 Rroxscaffold_6G00412370
rosa_rugosa Rorug03G0098400
rosa_samantha Rh3AG147900 Rh3BG170500 Rh3DG204500
rosa_wichuraiana Rw3G013930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 197
AccII CGCG 3 cut(s) 14, 227, 238
AciI CCGC 8 cut(s) 12, 53, 56, 150, 214, 225, 227, 361
AclWI GGATC 3 cut(s) 286, 299, 904
AcoI YGGCCR 1 cut(s) 852
AcsI RAATTY 2 cut(s) 506, 812
AdeI CACNNNGTG 1 cut(s) 930
AfaI GTAC 1 cut(s) 596
AfiI CCNNNNNNNGG 5 cut(s) 205, 248, 279, 444, 445
AgsI TTSAA 5 cut(s) 383, 407, 512, 820, 872
AjnI CCWGG 1 cut(s) 198
AjuI GAANNNNNNNTTGG 2 cut(s) 876, 908
AluBI AGCT 5 cut(s) 7, 266, 543, 644, 967
AluI AGCT 5 cut(s) 7, 266, 543, 644, 967
Alw21I GWGCWC 1 cut(s) 268
Alw26I GTCTC 2 cut(s) 428, 733
AlwI GGATC 3 cut(s) 286, 299, 904
AlwNI CAGNNNCTG 1 cut(s) 905
Ama87I CYCGRG 1 cut(s) 323
AoxI GGCC 3 cut(s) 196, 852, 911
ApeKI GCWGC 4 cut(s) 312, 533, 726, 956
ApoI RAATTY 2 cut(s) 506, 812
AseI ATTAAT 1 cut(s) 1011
Asp700I GAANNNNTTC 1 cut(s) 281
AspLEI GCGC 1 cut(s) 592
AspS9I GGNCC 2 cut(s) 90, 196
AsuC2I CCSGG 5 cut(s) 33, 243, 274, 324, 325
AsuHPI GGTGA 2 cut(s) 485, 624
AsuII TTCGAA 2 cut(s) 767, 878
AvaI CYCGRG 1 cut(s) 323
AvaII GGWCC 1 cut(s) 90
BalI TGGCCA 1 cut(s) 854
BamHI GGATCC 1 cut(s) 291
BanII GRGCYC 3 cut(s) 268, 632, 708
BbsI GAAGAC 1 cut(s) 597
Bbv12I GWGCWC 1 cut(s) 268
BbvI GCAGC 4 cut(s) 324, 520, 738, 968
BccI CCATC 2 cut(s) 452, 802
BceAI ACGGC 5 cut(s) 43, 137, 154, 287, 577
BciT130I CCWGG 1 cut(s) 200
BcnI CCSGG 5 cut(s) 33, 243, 274, 324, 325
BcoDI GTCTC 2 cut(s) 428, 733
BfaI CTAG 2 cut(s) 540, 615
BfmI CTRYAG 1 cut(s) 310
BfuAI ACCTGC 1 cut(s) 197
BglII AGATCT 1 cut(s) 584
BisI GCNGC 6 cut(s) 56, 228, 313, 534, 727, 957
BlsI GCNGC 6 cut(s) 57, 229, 314, 535, 728, 958
Bme1390I CCNGG 6 cut(s) 33, 200, 243, 274, 324, 325
Bme18I GGWCC 1 cut(s) 90
BmeT110I CYCGRG 1 cut(s) 323
BmgT120I GGNCC 2 cut(s) 90, 196
BmiI GGNNCC 3 cut(s) 91, 293, 372
BmrFI CCNGG 6 cut(s) 33, 200, 243, 274, 324, 325
BmsI GCATC 2 cut(s) 569, 708
BoxI GACNNNNGTC 1 cut(s) 152
BpiI GAAGAC 1 cut(s) 597
Bpu14I TTCGAA 2 cut(s) 767, 878
BpuMI CCSGG 5 cut(s) 33, 243, 274, 324, 325
BsaAI YACGTR 1 cut(s) 113
BsaBI GATNNNNATC 1 cut(s) 583
BsaI GGTCTC 2 cut(s) 428, 733
BsaJI CCNNGG 4 cut(s) 100, 225, 323, 522
Bsc4I CCNNNNNNNGG 5 cut(s) 205, 248, 279, 444, 445
Bse3DI GCAATG 1 cut(s) 88
Bse8I GATNNNNATC 1 cut(s) 583
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 4 cut(s) 100, 225, 323, 522
BseJI GATNNNNATC 1 cut(s) 583
BseLI CCNNNNNNNGG 5 cut(s) 205, 248, 279, 444, 445
BseMI GCAATG 1 cut(s) 88
BseMII CTCAG 2 cut(s) 65, 777
BseRI GAGGAG 1 cut(s) 91
BseXI GCAGC 4 cut(s) 324, 520, 738, 968
Bsh1236I CGCG 3 cut(s) 14, 227, 238
Bsh1285I CGRYCG 2 cut(s) 150, 218
BshFI GGCC 3 cut(s) 198, 854, 913
BsiEI CGRYCG 2 cut(s) 150, 218
BsiHKAI GWGCWC 1 cut(s) 268
BsiHKCI CYCGRG 1 cut(s) 323
BsiSI CCGG 5 cut(s) 32, 243, 261, 274, 324
BslFI GGGAC 1 cut(s) 103
BslI CCNNNNNNNGG 5 cut(s) 205, 248, 279, 444, 445
BsmAI GTCTC 2 cut(s) 428, 733
BsmFI GGGAC 1 cut(s) 103
BsnI GGCC 3 cut(s) 198, 854, 913
Bso31I GGTCTC 2 cut(s) 428, 733
BsoBI CYCGRG 1 cut(s) 323
Bsp119I TTCGAA 2 cut(s) 767, 878
Bsp1286I GDGCHC 3 cut(s) 268, 632, 708
Bsp143I GATC 3 cut(s) 291, 584, 896
Bsp68I TCGCGA 1 cut(s) 238
BspACI CCGC 8 cut(s) 12, 53, 56, 150, 214, 225, 227, 361
BspANI GGCC 3 cut(s) 198, 854, 913
BspCNI CTCAG 2 cut(s) 66, 778
BspFNI CGCG 3 cut(s) 14, 227, 238
BspLI GGNNCC 3 cut(s) 91, 293, 372
BspMAI CTGCAG 1 cut(s) 314
BspMI ACCTGC 1 cut(s) 197
BspPI GGATC 3 cut(s) 286, 299, 904
BspT104I TTCGAA 2 cut(s) 767, 878
BspTNI GGTCTC 2 cut(s) 428, 733
BsrDI GCAATG 1 cut(s) 88
BssECI CCNNGG 4 cut(s) 100, 225, 323, 522
BssMI GATC 3 cut(s) 291, 584, 896
BssT1I CCWWGG 1 cut(s) 522
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 282
BstBAI YACGTR 1 cut(s) 113
BstBI TTCGAA 2 cut(s) 767, 878
BstC8I GCNNGC 1 cut(s) 865
BstDEI CTNAG 2 cut(s) 74, 786
BstDSI CCRYGG 1 cut(s) 225
BstFNI CGCG 3 cut(s) 14, 227, 238
BstHHI GCGC 1 cut(s) 592
BstKTI GATC 3 cut(s) 294, 587, 899
BstMAI GTCTC 2 cut(s) 428, 733
BstMBI GATC 3 cut(s) 291, 584, 896
BstMCI CGRYCG 2 cut(s) 150, 218
BstMWI GCNNNNNNNGC 4 cut(s) 175, 533, 860, 953
BstNI CCWGG 1 cut(s) 200
BstPAI GACNNNNGTC 1 cut(s) 152
BstSCI CCNGG 6 cut(s) 31, 198, 241, 272, 322, 323
BstSFI CTRYAG 1 cut(s) 310
BstUI CGCG 3 cut(s) 14, 227, 238
BstV1I GCAGC 4 cut(s) 324, 520, 738, 968
BstV2I GAAGAC 1 cut(s) 597
BstX2I RGATCY 2 cut(s) 291, 584
BstYI RGATCY 2 cut(s) 291, 584
BsuRI GGCC 3 cut(s) 198, 854, 913
BtgI CCRYGG 1 cut(s) 225
BtuMI TCGCGA 1 cut(s) 238
BveI ACCTGC 1 cut(s) 197
Cac8I GCNNGC 1 cut(s) 865
CaiI CAGNNNCTG 1 cut(s) 905
CfoI GCGC 1 cut(s) 592
Cfr13I GGNCC 2 cut(s) 90, 196
Cfr42I CCGCGG 1 cut(s) 228
Cfr9I CCCGGG 1 cut(s) 323
Csp6I GTAC 1 cut(s) 595
CviAII CATG 1 cut(s) 193
CviQI GTAC 1 cut(s) 595
DdeI CTNAG 2 cut(s) 74, 786
DpnI GATC 3 cut(s) 293, 586, 898
DpnII GATC 3 cut(s) 291, 584, 896
DraIII CACNNNGTG 1 cut(s) 930
EaeI YGGCCR 1 cut(s) 852
EciI GGCGGA 1 cut(s) 376
Ecl136II GAGCTC 1 cut(s) 266
Eco130I CCWWGG 1 cut(s) 522
Eco24I GRGCYC 3 cut(s) 268, 632, 708
Eco31I GGTCTC 2 cut(s) 428, 733
Eco47I GGWCC 1 cut(s) 90
Eco53kI GAGCTC 1 cut(s) 266
Eco88I CYCGRG 1 cut(s) 323
EcoICRI GAGCTC 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 522
EcoT38I GRGCYC 3 cut(s) 268, 632, 708
ErhI CCWWGG 1 cut(s) 522
FaeI CATG 1 cut(s) 196
FaiI YATR 3 cut(s) 23, 194, 917
FaqI GGGAC 1 cut(s) 103
FatI CATG 1 cut(s) 192
FauI CCCGC 2 cut(s) 19, 60
Fnu4HI GCNGC 6 cut(s) 56, 228, 313, 534, 727, 957
FriOI GRGCYC 3 cut(s) 268, 632, 708
Fsp4HI GCNGC 6 cut(s) 56, 228, 313, 534, 727, 957
FspBI CTAG 2 cut(s) 540, 615
GlaI GCGC 1 cut(s) 591
GluI GCNGC 6 cut(s) 56, 228, 313, 534, 727, 957
HaeIII GGCC 3 cut(s) 198, 854, 913
HapII CCGG 5 cut(s) 32, 243, 261, 274, 324
HhaI GCGC 1 cut(s) 592
Hin1II CATG 1 cut(s) 196
Hin6I GCGC 1 cut(s) 590
HinP1I GCGC 1 cut(s) 590
HinfI GANTC 8 cut(s) 28, 118, 758, 776, 902, 919, 977, 985
HpaII CCGG 5 cut(s) 32, 243, 261, 274, 324
HphI GGTGA 2 cut(s) 485, 624
Hpy188I TCNGA 8 cut(s) 39, 75, 123, 270, 751, 842, 901, 940
Hpy188III TCNNGA 4 cut(s) 88, 130, 237, 780
Hpy99I CGWCG 3 cut(s) 158, 175, 178
HpyCH4III ACNGT 1 cut(s) 282
HpyCH4IV ACGT 1 cut(s) 112
HpyCH4V TGCA 5 cut(s) 192, 312, 348, 396, 582
HpyF10VI GCNNNNNNNGC 4 cut(s) 175, 533, 860, 953
HpyF3I CTNAG 2 cut(s) 74, 786
HpySE526I ACGT 1 cut(s) 112
Hsp92II CATG 1 cut(s) 196
HspAI GCGC 1 cut(s) 590
KspI CCGCGG 1 cut(s) 228
Kzo9I GATC 3 cut(s) 291, 584, 896
LmnI GCTCC 4 cut(s) 39, 78, 263, 271
Lsp1109I GCAGC 4 cut(s) 324, 520, 738, 968
LweI GCATC 2 cut(s) 569, 708
MaeI CTAG 2 cut(s) 540, 615
MaeII ACGT 1 cut(s) 112
MaeIII GTNAC 2 cut(s) 108, 184
MalI GATC 3 cut(s) 293, 586, 898
MboI GATC 3 cut(s) 291, 584, 896
MfeI CAATTG 2 cut(s) 453, 998
MflI RGATCY 2 cut(s) 291, 584
MhlI GDGCHC 3 cut(s) 268, 632, 708
MlsI TGGCCA 1 cut(s) 854
MluCI AATT 6 cut(s) 440, 453, 506, 812, 998, 1012
MluNI TGGCCA 1 cut(s) 854
MlyI GAGTC 3 cut(s) 37, 127, 767
MmeI TCCRAC 2 cut(s) 17, 293
MnlI CCTC 6 cut(s) 60, 69, 95, 126, 232, 365
Mox20I TGGCCA 1 cut(s) 854
MroXI GAANNNNTTC 1 cut(s) 281
MscI TGGCCA 1 cut(s) 854
MseI TTAA 2 cut(s) 572, 1011
Msp20I TGGCCA 1 cut(s) 854
MspA1I CMGCKG 1 cut(s) 227
MspI CCGG 5 cut(s) 32, 243, 261, 274, 324
MspR9I CCNGG 6 cut(s) 33, 200, 243, 274, 324, 325
MunI CAATTG 2 cut(s) 453, 998
MvaI CCWGG 1 cut(s) 200
MvnI CGCG 3 cut(s) 14, 227, 238
MwoI GCNNNNNNNGC 4 cut(s) 175, 533, 860, 953
NciI CCSGG 5 cut(s) 33, 243, 274, 324, 325
NdeII GATC 3 cut(s) 291, 584, 896
NlaIII CATG 1 cut(s) 196
NlaIV GGNNCC 3 cut(s) 91, 293, 372
NmeAIII GCCGAG 2 cut(s) 125, 889
NruI TCGCGA 1 cut(s) 238
NspV TTCGAA 2 cut(s) 767, 878
PdmI GAANNNNTTC 1 cut(s) 281
PfeI GAWTC 5 cut(s) 776, 902, 919, 977, 985
PkrI GCNGC 6 cut(s) 57, 229, 314, 535, 728, 958
PleI GAGTC 3 cut(s) 36, 126, 766
PpsI GAGTC 3 cut(s) 36, 126, 766
Ppu21I YACGTR 1 cut(s) 113
PshAI GACNNNNGTC 1 cut(s) 152
PshBI ATTAAT 1 cut(s) 1011
Psp124BI GAGCTC 1 cut(s) 268
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 3 cut(s) 91, 293, 372
PspPI GGNCC 2 cut(s) 90, 196
PstI CTGCAG 1 cut(s) 314
PstNI CAGNNNCTG 1 cut(s) 905
PsuI RGATCY 2 cut(s) 291, 584
RruI TCGCGA 1 cut(s) 238
RsaI GTAC 1 cut(s) 596
RsaNI GTAC 1 cut(s) 595
SacI GAGCTC 1 cut(s) 268
SacII CCGCGG 1 cut(s) 228
SaqAI TTAA 2 cut(s) 572, 1011
SatI GCNGC 6 cut(s) 56, 228, 313, 534, 727, 957
Sau3AI GATC 3 cut(s) 291, 584, 896
Sau96I GGNCC 2 cut(s) 90, 196
SchI GAGTC 3 cut(s) 37, 127, 767
ScrFI CCNGG 6 cut(s) 33, 200, 243, 274, 324, 325
SduI GDGCHC 3 cut(s) 268, 632, 708
SfaNI GCATC 2 cut(s) 569, 708
SfcI CTRYAG 1 cut(s) 310
Sfr303I CCGCGG 1 cut(s) 228
SfuI TTCGAA 2 cut(s) 767, 878
SgrBI CCGCGG 1 cut(s) 228
SinI GGWCC 1 cut(s) 90
SmaI CCCGGG 1 cut(s) 325
Sse9I AATT 6 cut(s) 440, 453, 506, 812, 998, 1012
SsiI CCGC 8 cut(s) 12, 53, 56, 150, 214, 225, 227, 361
SspI AATATT 1 cut(s) 875
SspMI CTAG 2 cut(s) 540, 615
SstI GAGCTC 1 cut(s) 268
StyD4I CCNGG 6 cut(s) 31, 198, 241, 272, 322, 323
StyI CCWWGG 1 cut(s) 522
TaaI ACNGT 1 cut(s) 282
TaiI ACGT 1 cut(s) 115
TaqI TCGA 9 cut(s) 26, 156, 411, 577, 702, 767, 779, 878, 969
TasI AATT 6 cut(s) 440, 453, 506, 812, 998, 1012
TauI GCSGC 2 cut(s) 58, 230
TfiI GAWTC 5 cut(s) 776, 902, 919, 977, 985
Tru1I TTAA 2 cut(s) 572, 1011
Tru9I TTAA 2 cut(s) 572, 1011
TseI GCWGC 4 cut(s) 312, 533, 726, 956
TspDTI ATGAA 5 cut(s) 17, 495, 813, 897, 977
TspGWI ACGGA 1 cut(s) 363
TspMI CCCGGG 1 cut(s) 323
VpaK11BI GGWCC 1 cut(s) 90
VspI ATTAAT 1 cut(s) 1011
XapI RAATTY 2 cut(s) 506, 812
XmaI CCCGGG 1 cut(s) 323
XmnI GAANNNNTTC 1 cut(s) 281
XspI CTAG 2 cut(s) 540, 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.