Rmu_sc0037667.1_g000001

Protamine P1 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0037667.1
OG0013294
Physical Location & Seq
Forward (+)
1 .. 490
490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0037667.1_g000001.1.cds

Sequence Viewer

Length: 433 bp
atctgcgccgtacaggtcgtcttctttggctagtagattttggggctcaccagacagagctaaagaagaaacaggggaagaagaacagagcaaaacaggggaagcagaacagagcatcgagccccaaaacagagaaaatggcagcgaaaataagagacccacatcggaaagagagtccatttcggaacaagaatcgagaactgagcaacaaaatgaagaaaagatgaaatttttcaagggattggaaaactcaataagagaaagaatggccaaatctgcgagcattgaatattcgaatgaagtggagttcggatcagattctgctcggcctatgattctcacaaggtgtaagtcagaaccagcaagaacagcagcagagaagctcgacccagattcgttgattcattcccaccgattgtttgtgattaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

16.27

Weight (kDa)

5.15

Isoelectric Point (pI)

72.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37100 AT5G03110
fragaria_vesca FvH4_6g15510
malus_domestica MD04G1102600.v1.1 MD12G1122400.v1.1
prunus_persica Prupe.6G240400_v2.0.a1
pyrus_communis pycom12g12120
rosa_chinensis RchiOBHm_Chr3g0469011
rosa_laevigata RLG00000024390
rosa_multiflora Rmu_co8173580.1_g000001 Rmu_sc0037667.1_g000001
rosa_roxburghii Rroxscaffold_2G00112190 Rroxscaffold_6G00412370
rosa_rugosa Rorug03G0098400
rosa_samantha Rh3AG147900 Rh3BG170500 Rh3DG204500
rosa_wichuraiana Rw3G013930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 320
AcoI YGGCCR 1 cut(s) 268
AcsI RAATTY 1 cut(s) 228
AdeI CACNNNGTG 1 cut(s) 346
AfaI GTAC 1 cut(s) 12
AgsI TTSAA 2 cut(s) 236, 288
AluBI AGCT 2 cut(s) 60, 383
AluI AGCT 2 cut(s) 60, 383
Alw26I GTCTC 1 cut(s) 149
AlwI GGATC 1 cut(s) 320
AlwNI CAGNNNCTG 1 cut(s) 321
AoxI GGCC 2 cut(s) 268, 327
ApeKI GCWGC 2 cut(s) 142, 372
ApoI RAATTY 1 cut(s) 228
AseI ATTAAT 1 cut(s) 427
Asp700I GAANNNNTTC 1 cut(s) 231
AspLEI GCGC 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 40
AsuII TTCGAA 1 cut(s) 294
BalI TGGCCA 1 cut(s) 270
BanII GRGCYC 2 cut(s) 48, 124
BbsI GAAGAC 1 cut(s) 13
BbvI GCAGC 2 cut(s) 154, 384
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 1 cut(s) 31
BisI GCNGC 2 cut(s) 143, 373
BlsI GCNGC 2 cut(s) 144, 374
BmsI GCATC 1 cut(s) 124
BpiI GAAGAC 1 cut(s) 13
Bpu14I TTCGAA 1 cut(s) 294
BsaI GGTCTC 1 cut(s) 149
BseMII CTCAG 1 cut(s) 193
BseXI GCAGC 2 cut(s) 154, 384
BshFI GGCC 2 cut(s) 270, 329
BsmAI GTCTC 1 cut(s) 149
BsnI GGCC 2 cut(s) 270, 329
Bso31I GGTCTC 1 cut(s) 149
Bsp119I TTCGAA 1 cut(s) 294
Bsp1286I GDGCHC 2 cut(s) 48, 124
Bsp143I GATC 1 cut(s) 312
BspANI GGCC 2 cut(s) 270, 329
BspCNI CTCAG 1 cut(s) 194
BspPI GGATC 1 cut(s) 320
BspT104I TTCGAA 1 cut(s) 294
BspTNI GGTCTC 1 cut(s) 149
BssMI GATC 1 cut(s) 312
BstBI TTCGAA 1 cut(s) 294
BstC8I GCNNGC 1 cut(s) 281
BstDEI CTNAG 1 cut(s) 202
BstHHI GCGC 1 cut(s) 8
BstKTI GATC 1 cut(s) 315
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 1 cut(s) 312
BstMWI GCNNNNNNNGC 2 cut(s) 276, 369
BstV1I GCAGC 2 cut(s) 154, 384
BstV2I GAAGAC 1 cut(s) 13
BsuRI GGCC 2 cut(s) 270, 329
Cac8I GCNNGC 1 cut(s) 281
CaiI CAGNNNCTG 1 cut(s) 321
CfoI GCGC 1 cut(s) 8
Csp6I GTAC 1 cut(s) 11
CviJI RGCY 7 cut(s) 30, 46, 60, 122, 270, 329, 383
CviKI_1 RGCY 7 cut(s) 30, 46, 60, 122, 270, 329, 383
CviQI GTAC 1 cut(s) 11
DdeI CTNAG 1 cut(s) 202
DpnI GATC 1 cut(s) 314
DpnII GATC 1 cut(s) 312
DraIII CACNNNGTG 1 cut(s) 346
EaeI YGGCCR 1 cut(s) 268
Eco24I GRGCYC 2 cut(s) 48, 124
Eco31I GGTCTC 1 cut(s) 149
EcoT38I GRGCYC 2 cut(s) 48, 124
FaiI YATR 1 cut(s) 333
Fnu4HI GCNGC 2 cut(s) 143, 373
FriOI GRGCYC 2 cut(s) 48, 124
Fsp4HI GCNGC 2 cut(s) 143, 373
FspBI CTAG 1 cut(s) 31
GlaI GCGC 1 cut(s) 7
GluI GCNGC 2 cut(s) 143, 373
HaeIII GGCC 2 cut(s) 270, 329
HhaI GCGC 1 cut(s) 8
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HinfI GANTC 6 cut(s) 174, 192, 318, 335, 393, 401
HphI GGTGA 1 cut(s) 40
Hpy188I TCNGA 5 cut(s) 167, 185, 312, 317, 356
Hpy188III TCNNGA 1 cut(s) 196
HpyF10VI GCNNNNNNNGC 2 cut(s) 276, 369
HpyF3I CTNAG 1 cut(s) 202
HspAI GCGC 1 cut(s) 6
Kzo9I GATC 1 cut(s) 312
LpnPI CCDG 5 cut(s) 58, 64, 82, 373, 403
Lsp1109I GCAGC 2 cut(s) 154, 384
LweI GCATC 1 cut(s) 124
MaeI CTAG 1 cut(s) 31
MalI GATC 1 cut(s) 314
MboI GATC 1 cut(s) 312
MboII GAAGA 5 cut(s) 13, 78, 90, 93, 228
MhlI GDGCHC 2 cut(s) 48, 124
MlsI TGGCCA 1 cut(s) 270
MluCI AATT 2 cut(s) 228, 428
MluNI TGGCCA 1 cut(s) 270
MlyI GAGTC 1 cut(s) 183
Mox20I TGGCCA 1 cut(s) 270
MroXI GAANNNNTTC 1 cut(s) 231
MscI TGGCCA 1 cut(s) 270
MseI TTAA 1 cut(s) 427
Msp20I TGGCCA 1 cut(s) 270
MwoI GCNNNNNNNGC 2 cut(s) 276, 369
NdeII GATC 1 cut(s) 312
NmeAIII GCCGAG 1 cut(s) 305
NspV TTCGAA 1 cut(s) 294
PdmI GAANNNNTTC 1 cut(s) 231
PfeI GAWTC 5 cut(s) 192, 318, 335, 393, 401
PkrI GCNGC 2 cut(s) 144, 374
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
PshBI ATTAAT 1 cut(s) 427
PstNI CAGNNNCTG 1 cut(s) 321
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
SaqAI TTAA 1 cut(s) 427
SatI GCNGC 2 cut(s) 143, 373
Sau3AI GATC 1 cut(s) 312
SchI GAGTC 1 cut(s) 183
SduI GDGCHC 2 cut(s) 48, 124
SetI ASST 4 cut(s) 18, 62, 348, 385
SfaNI GCATC 1 cut(s) 124
SfuI TTCGAA 1 cut(s) 294
Sse9I AATT 2 cut(s) 228, 428
SspI AATATT 1 cut(s) 291
SspMI CTAG 1 cut(s) 31
TaqI TCGA 4 cut(s) 118, 195, 294, 385
TasI AATT 2 cut(s) 228, 428
TfiI GAWTC 5 cut(s) 192, 318, 335, 393, 401
Tru1I TTAA 1 cut(s) 427
Tru9I TTAA 1 cut(s) 427
TseI GCWGC 2 cut(s) 142, 372
TspDTI ATGAA 4 cut(s) 229, 240, 313, 393
VspI ATTAAT 1 cut(s) 427
XapI RAATTY 1 cut(s) 228
XmnI GAANNNNTTC 1 cut(s) 231
XspI CTAG 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.