Prupe.6G240400_v2.0.a1

Protamine P1 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013294
Physical Location & Seq
Forward (+)
23926580 .. 23928705
2126 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G240400.1

Sequence Viewer

Length: 990 bp
ATGAAGCTATCTGCAAAACCCATATCGAGTCCGGGTCGAACCGATAAGTTCCCGCCGCCATTAGTGAGGTTTCTGAGGACCAATGTTGGGAGCAGAAGCAGAGGGCGGTTACGTTCGAGCCCAATGTTTGTGAGGAAAAAAAACACCGCCATTGAAACCCAAGAGCCCTCTTCTCCTAAAGTCACGTGCATGGGGCAGGTCCGAGTCCGACGATCCTCCAATCAAGGCGGGTCGAAACCTCTAAGAGCCCGGCGGACCGGAGCTCCGACCCTACGACGGTGTAAATGGATCCAAAACGCCATGCTTTGCCGCCATTTTCCAGGGAAAATCAAGCCCAAGTCTTTAGGACCCGTTTGGCGCAAGTGGGTACCGTTTTTTCAAGTGGGTTTTTGCAGGAAAGGCCAAATTAAAGAGGACGCGCCAAAGATTGAGTCGAAATTTGGAGATGGAATTGAAGTTTCAGATGGGGAAGAAGAAGAAGAAGACCAAGAATATGAAAGAAAGGCCAAAGCTTTTGTTTCTTCTTCTTCTTCTTCACCACCAAGGAACGCTTTGCTATTAACTCGATGCAGATCTGCGCCGTACAGGTCTTCATCTTTGGCCAGTAGATTTTGGGGCTCACCTATAAGAGCTGAAGAAACAGAGGAAGAACAGAGCACAGAGACCCAAAACGGAGGAAATTGCACCGAGAACGAGAGACCCATATCAGAACGGGAGTCCATTTTGGATCAAGAAGCGAAATTAGACTCAGAAAGTGAAGAAAAATTGAAAATTTTCATGGAATTGGAGAGTTCAATCAGAGAACGAATGGCCAAATCTGCAAGTATCGAAGATACAGACGAGGACCTTGGAGGCTCTGCTCGACCTCTAATACTCACAAGGTGTAAATCAGAACCAGCAAGAACAGCAGAGAAGCTCGACCCGGAGCTGAGCTTCTGGAGAAAGAGAAGGTTGGGTATTGTTGATTCATGCTCACCAAGTATTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

330

Amino Acids

37.11

Weight (kDa)

9.59

Isoelectric Point (pI)

76.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37100 AT5G03110
fragaria_vesca FvH4_6g15510
malus_domestica MD04G1102600.v1.1 MD12G1122400.v1.1
prunus_persica Prupe.6G240400_v2.0.a1
pyrus_communis pycom12g12120
rosa_chinensis RchiOBHm_Chr3g0469011
rosa_laevigata RLG00000024390
rosa_multiflora Rmu_co8173580.1_g000001 Rmu_sc0037667.1_g000001
rosa_roxburghii Rroxscaffold_2G00112190 Rroxscaffold_6G00412370
rosa_rugosa Rorug03G0098400
rosa_samantha Rh3AG147900 Rh3BG170500 Rh3DG204500
rosa_wichuraiana Rw3G013930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 187
Acc65I GGTACC 1 cut(s) 367
AccB1I GGYRCC 1 cut(s) 367
AccII CGCG 1 cut(s) 419
AciI CCGC 7 cut(s) 53, 56, 106, 147, 228, 253, 310
AclWI GGATC 4 cut(s) 207, 283, 296, 735
AcoI YGGCCR 2 cut(s) 600, 810
AcsI RAATTY 2 cut(s) 437, 771
AcuI CTGAAG 1 cut(s) 654
AcvI CACGTG 1 cut(s) 186
AdeI CACNNNGTG 1 cut(s) 882
AfaI GTAC 2 cut(s) 369, 584
AfiI CCNNNNNNNGG 2 cut(s) 87, 276
AgsI TTSAA 5 cut(s) 155, 380, 455, 769, 795
AjnI CCWGG 1 cut(s) 319
AluBI AGCT 7 cut(s) 7, 263, 512, 632, 916, 928, 933
AluI AGCT 7 cut(s) 7, 263, 512, 632, 916, 928, 933
Alw21I GWGCWC 2 cut(s) 265, 659
Alw26I GTCTC 2 cut(s) 656, 691
AlwI GGATC 4 cut(s) 207, 283, 296, 735
AoxI GGCC 4 cut(s) 400, 504, 600, 810
ApoI RAATTY 2 cut(s) 437, 771
ArsI GACNNNNNNTTYG 2 cut(s) 416, 448
Asp700I GAANNNNTTC 1 cut(s) 773
Asp718I GGTACC 1 cut(s) 367
AspLEI GCGC 3 cut(s) 360, 421, 580
AspS9I GGNCC 5 cut(s) 78, 199, 255, 347, 844
AsuC2I CCSGG 3 cut(s) 33, 250, 923
AsuHPI GGTGA 3 cut(s) 528, 612, 966
AvaII GGWCC 5 cut(s) 78, 199, 255, 347, 844
BalI TGGCCA 2 cut(s) 602, 812
BamHI GGATCC 1 cut(s) 288
BanI GGYRCC 1 cut(s) 367
BanII GRGCYC 5 cut(s) 122, 168, 250, 265, 620
BbrPI CACGTG 1 cut(s) 186
BbsI GAAGAC 2 cut(s) 489, 582
Bbv12I GWGCWC 2 cut(s) 265, 659
BccI CCATC 2 cut(s) 440, 458
BceAI ACGGC 1 cut(s) 565
BciT130I CCWGG 1 cut(s) 321
BcnI CCSGG 3 cut(s) 33, 250, 923
BcoDI GTCTC 2 cut(s) 656, 691
BfuAI ACCTGC 1 cut(s) 187
BglII AGATCT 1 cut(s) 572
BisI GCNGC 2 cut(s) 56, 310
BlpI GCTNAGC 1 cut(s) 929
BlsI GCNGC 2 cut(s) 57, 311
Bme1390I CCNGG 4 cut(s) 33, 250, 321, 923
Bme18I GGWCC 5 cut(s) 78, 199, 255, 347, 844
BmgT120I GGNCC 5 cut(s) 78, 199, 255, 347, 844
BmiI GGNNCC 3 cut(s) 290, 349, 369
BmrFI CCNGG 4 cut(s) 33, 250, 321, 923
BmsI GCATC 1 cut(s) 557
BpiI GAAGAC 2 cut(s) 489, 582
BpmI CTGGAG 1 cut(s) 958
Bpu1102I GCTNAGC 1 cut(s) 929
BpuMI CCSGG 3 cut(s) 33, 250, 923
BsaAI YACGTR 1 cut(s) 186
BsaBI GATNNNNATC 1 cut(s) 571
BsaI GGTCTC 2 cut(s) 656, 691
BsaJI CCNNGG 3 cut(s) 320, 542, 847
BsaWI WCCGGW 1 cut(s) 257
BsaXI ACNNNNNCTCC 2 cut(s) 247, 277
Bsc4I CCNNNNNNNGG 2 cut(s) 87, 276
Bse1I ACTGG 1 cut(s) 603
Bse8I GATNNNNATC 1 cut(s) 571
BseBI CCWGG 1 cut(s) 321
BseDI CCNNGG 3 cut(s) 320, 542, 847
BseJI GATNNNNATC 1 cut(s) 571
BseLI CCNNNNNNNGG 2 cut(s) 87, 276
BseMII CTCAG 3 cut(s) 65, 762, 920
BseNI ACTGG 1 cut(s) 603
Bsh1236I CGCG 1 cut(s) 419
BshFI GGCC 4 cut(s) 402, 506, 602, 812
BshNI GGYRCC 1 cut(s) 367
BsiHKAI GWGCWC 2 cut(s) 265, 659
BsiSI CCGG 4 cut(s) 32, 250, 258, 923
BslI CCNNNNNNNGG 2 cut(s) 87, 276
BsmAI GTCTC 2 cut(s) 656, 691
BsnI GGCC 4 cut(s) 402, 506, 602, 812
Bso31I GGTCTC 2 cut(s) 656, 691
Bsp1286I GDGCHC 6 cut(s) 122, 168, 250, 265, 620, 659
Bsp143I GATC 4 cut(s) 212, 288, 572, 727
Bsp1720I GCTNAGC 1 cut(s) 929
BspACI CCGC 7 cut(s) 53, 56, 106, 147, 228, 253, 310
BspANI GGCC 4 cut(s) 402, 506, 602, 812
BspCNI CTCAG 3 cut(s) 66, 761, 921
BspFNI CGCG 1 cut(s) 419
BspLI GGNNCC 3 cut(s) 290, 349, 369
BspMI ACCTGC 1 cut(s) 187
BspPI GGATC 4 cut(s) 207, 283, 296, 735
BspT107I GGYRCC 1 cut(s) 367
BspTNI GGTCTC 2 cut(s) 656, 691
BsrI ACTGG 1 cut(s) 603
BssECI CCNNGG 3 cut(s) 320, 542, 847
BssMI GATC 4 cut(s) 212, 288, 572, 727
BssT1I CCWWGG 2 cut(s) 542, 847
Bst2UI CCWGG 1 cut(s) 321
Bst4CI ACNGT 2 cut(s) 279, 372
Bst6I CTCTTC 1 cut(s) 175
BstBAI YACGTR 1 cut(s) 186
BstDEI CTNAG 4 cut(s) 74, 242, 748, 929
BstFNI CGCG 1 cut(s) 419
BstHHI GCGC 3 cut(s) 360, 421, 580
BstKTI GATC 4 cut(s) 215, 291, 575, 730
BstMAI GTCTC 2 cut(s) 656, 691
BstMBI GATC 4 cut(s) 212, 288, 572, 727
BstMWI GCNNNNNNNGC 3 cut(s) 399, 818, 905
BstNI CCWGG 1 cut(s) 321
BstSCI CCNGG 4 cut(s) 31, 248, 319, 921
BstUI CGCG 1 cut(s) 419
BstV2I GAAGAC 2 cut(s) 489, 582
BstX2I RGATCY 2 cut(s) 288, 572
BstYI RGATCY 2 cut(s) 288, 572
BsuRI GGCC 4 cut(s) 402, 506, 602, 812
BveI ACCTGC 1 cut(s) 187
CfoI GCGC 3 cut(s) 360, 421, 580
Cfr13I GGNCC 5 cut(s) 78, 199, 255, 347, 844
CpoI CGGWCCG 1 cut(s) 255
CseI GACGC 1 cut(s) 425
Csp6I GTAC 2 cut(s) 368, 583
CspI CGGWCCG 1 cut(s) 255
CviAII CATG 4 cut(s) 190, 301, 778, 969
CviQI GTAC 2 cut(s) 368, 583
DdeI CTNAG 4 cut(s) 74, 242, 748, 929
DpnI GATC 4 cut(s) 214, 290, 574, 729
DpnII GATC 4 cut(s) 212, 288, 572, 727
DraIII CACNNNGTG 1 cut(s) 882
EaeI YGGCCR 2 cut(s) 600, 810
Eam1104I CTCTTC 1 cut(s) 175
EarI CTCTTC 1 cut(s) 175
EciI GGCGGA 1 cut(s) 268
Ecl136II GAGCTC 1 cut(s) 263
Eco130I CCWWGG 2 cut(s) 542, 847
Eco24I GRGCYC 5 cut(s) 122, 168, 250, 265, 620
Eco31I GGTCTC 2 cut(s) 656, 691
Eco47I GGWCC 5 cut(s) 78, 199, 255, 347, 844
Eco53kI GAGCTC 1 cut(s) 263
Eco57I CTGAAG 1 cut(s) 654
Eco72I CACGTG 1 cut(s) 186
EcoICRI GAGCTC 1 cut(s) 263
EcoO109I RGGNCCY 2 cut(s) 347, 844
EcoRII CCWGG 1 cut(s) 319
EcoT14I CCWWGG 2 cut(s) 542, 847
EcoT38I GRGCYC 5 cut(s) 122, 168, 250, 265, 620
ErhI CCWWGG 2 cut(s) 542, 847
FaeI CATG 4 cut(s) 193, 304, 781, 972
FaiI YATR 8 cut(s) 23, 191, 302, 495, 626, 704, 779, 970
FalI AAGNNNNNCTT 2 cut(s) 535, 567
FatI CATG 4 cut(s) 189, 300, 777, 968
FauI CCCGC 2 cut(s) 60, 221
Fnu4HI GCNGC 2 cut(s) 56, 310
FriOI GRGCYC 5 cut(s) 122, 168, 250, 265, 620
Fsp4HI GCNGC 2 cut(s) 56, 310
GlaI GCGC 3 cut(s) 359, 420, 579
GluI GCNGC 2 cut(s) 56, 310
GsuI CTGGAG 1 cut(s) 958
HaeIII GGCC 4 cut(s) 402, 506, 602, 812
HapII CCGG 4 cut(s) 32, 250, 258, 923
HgaI GACGC 1 cut(s) 425
HhaI GCGC 3 cut(s) 360, 421, 580
Hin1II CATG 4 cut(s) 193, 304, 781, 972
Hin6I GCGC 3 cut(s) 358, 419, 578
HinP1I GCGC 3 cut(s) 358, 419, 578
HindIII AAGCTT 1 cut(s) 510
HinfI GANTC 6 cut(s) 28, 204, 431, 716, 746, 965
HpaII CCGG 4 cut(s) 32, 250, 258, 923
HphI GGTGA 3 cut(s) 528, 612, 966
Hpy188I TCNGA 9 cut(s) 75, 203, 209, 267, 463, 709, 751, 800, 892
Hpy188III TCNNGA 2 cut(s) 731, 937
Hpy99I CGWCG 2 cut(s) 213, 279
HpyAV CCTTC 1 cut(s) 942
HpyCH4III ACNGT 2 cut(s) 279, 372
HpyCH4IV ACGT 2 cut(s) 112, 185
HpyCH4V TGCA 6 cut(s) 14, 189, 393, 570, 684, 821
HpyF10VI GCNNNNNNNGC 3 cut(s) 399, 818, 905
HpyF3I CTNAG 4 cut(s) 74, 242, 748, 929
HpySE526I ACGT 2 cut(s) 112, 185
Hsp92II CATG 4 cut(s) 193, 304, 781, 972
HspAI GCGC 3 cut(s) 358, 419, 578
KpnI GGTACC 1 cut(s) 371
Kzo9I GATC 4 cut(s) 212, 288, 572, 727
LmnI GCTCC 4 cut(s) 90, 260, 268, 925
LweI GCATC 1 cut(s) 557
MaeII ACGT 2 cut(s) 112, 185
MaeIII GTNAC 2 cut(s) 108, 181
MalI GATC 4 cut(s) 214, 290, 574, 729
MboI GATC 4 cut(s) 212, 288, 572, 727
MflI RGATCY 2 cut(s) 288, 572
MhlI GDGCHC 6 cut(s) 122, 168, 250, 265, 620, 659
MlsI TGGCCA 2 cut(s) 602, 812
MluCI AATT 8 cut(s) 405, 437, 450, 679, 740, 764, 771, 782
MluNI TGGCCA 2 cut(s) 602, 812
MlyI GAGTC 5 cut(s) 37, 213, 440, 725, 740
MmeI TCCRAC 2 cut(s) 232, 290
Mox20I TGGCCA 2 cut(s) 602, 812
MroXI GAANNNNTTC 1 cut(s) 773
MscI TGGCCA 2 cut(s) 602, 812
MseI TTAA 2 cut(s) 408, 560
MslI CAYNNNNRTG 1 cut(s) 188
Msp20I TGGCCA 2 cut(s) 602, 812
MspI CCGG 4 cut(s) 32, 250, 258, 923
MspR9I CCNGG 4 cut(s) 33, 250, 321, 923
MvaI CCWGG 1 cut(s) 321
MvnI CGCG 1 cut(s) 419
MwoI GCNNNNNNNGC 3 cut(s) 399, 818, 905
NciI CCSGG 3 cut(s) 33, 250, 923
NdeII GATC 4 cut(s) 212, 288, 572, 727
NlaIII CATG 4 cut(s) 193, 304, 781, 972
NlaIV GGNNCC 3 cut(s) 290, 349, 369
NmuCI GTSAC 1 cut(s) 181
PdmI GAANNNNTTC 1 cut(s) 773
PfeI GAWTC 1 cut(s) 965
PkrI GCNGC 2 cut(s) 57, 311
PleI GAGTC 5 cut(s) 36, 212, 439, 724, 740
PmaCI CACGTG 1 cut(s) 186
PmlI CACGTG 1 cut(s) 186
PpsI GAGTC 5 cut(s) 36, 212, 439, 724, 740
Ppu21I YACGTR 1 cut(s) 186
PpuMI RGGWCCY 2 cut(s) 347, 844
Psp124BI GAGCTC 1 cut(s) 265
Psp5II RGGWCCY 2 cut(s) 347, 844
Psp6I CCWGG 1 cut(s) 319
PspCI CACGTG 1 cut(s) 186
PspGI CCWGG 1 cut(s) 319
PspN4I GGNNCC 3 cut(s) 290, 349, 369
PspPI GGNCC 5 cut(s) 78, 199, 255, 347, 844
PspPPI RGGWCCY 2 cut(s) 347, 844
PsuI RGATCY 2 cut(s) 288, 572
RsaI GTAC 2 cut(s) 369, 584
RsaNI GTAC 2 cut(s) 368, 583
RseI CAYNNNNRTG 1 cut(s) 188
Rsr2I CGGWCCG 1 cut(s) 255
RsrII CGGWCCG 1 cut(s) 255
SacI GAGCTC 1 cut(s) 265
SaqAI TTAA 2 cut(s) 408, 560
SatI GCNGC 2 cut(s) 56, 310
Sau3AI GATC 4 cut(s) 212, 288, 572, 727
Sau96I GGNCC 5 cut(s) 78, 199, 255, 347, 844
SchI GAGTC 5 cut(s) 37, 213, 440, 725, 740
ScrFI CCNGG 4 cut(s) 33, 250, 321, 923
SduI GDGCHC 6 cut(s) 122, 168, 250, 265, 620, 659
SfaNI GCATC 1 cut(s) 557
SinI GGWCC 5 cut(s) 78, 199, 255, 347, 844
SmiMI CAYNNNNRTG 1 cut(s) 188
Sse9I AATT 8 cut(s) 405, 437, 450, 679, 740, 764, 771, 782
SsiI CCGC 7 cut(s) 53, 56, 106, 147, 228, 253, 310
SstI GAGCTC 1 cut(s) 265
StyD4I CCNGG 4 cut(s) 31, 248, 319, 921
StyI CCWWGG 2 cut(s) 542, 847
TaaI ACNGT 2 cut(s) 279, 372
TaiI ACGT 2 cut(s) 115, 188
TaqI TCGA 9 cut(s) 26, 37, 116, 233, 434, 565, 828, 862, 918
TasI AATT 8 cut(s) 405, 437, 450, 679, 740, 764, 771, 782
TauI GCSGC 2 cut(s) 58, 312
TfiI GAWTC 1 cut(s) 965
Tru1I TTAA 2 cut(s) 408, 560
Tru9I TTAA 2 cut(s) 408, 560
TseFI GTSAC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 5 cut(s) 17, 510, 582, 766, 957
TspGWI ACGGA 1 cut(s) 687
VpaK11BI GGWCC 5 cut(s) 78, 199, 255, 347, 844
XapI RAATTY 2 cut(s) 437, 771
XmnI GAANNNNTTC 1 cut(s) 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.