AT5G03110

BEST Arabidopsis thaliana protein match is protamine P1 family protein (TAIR AT2G37100.1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013294
Physical Location & Seq
Forward (+)
730127 .. 731462
1336 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G03110.1

Sequence Viewer

Length: 852 bp
ATGATGATTTCTCGGAGACCCGTTTCAAGTCCGGGTCGGGTAGAGAAATATCCACCGCCTTTTATGGGGTTTTTGAGAAGTAAGAGCAACGGCGGAAGTACAAGCAGGAGTAGAAGTCGAAGCAGAGGAAGGTCACGCGCTAGTCCTCTTTTCGTTCGCCGGAATAAATCCGCGGCGGCGGTGGCTCAAGAACCGTCGTCTCCGAAGGTTACTTGCATGGGTCAAGTCCGGGTCAACCGATCGAAGCCCAAAATTAAACCCGAATCTCGAGATAACCCGACCCGACGACGATGTGAGTGGCTCCGAAACGCGTCGTTTTATAACAAATTCGCCGGGAAAATCAAAACGATGACGTTTTGGCCTAAATGGAGACTCTGTTCGTTTTCGTGTGCTTGTCGGAATTTGAAGGAGAAAGATTCTCCGAGAAGTCAATTAGATCATCCGACAACGGAATCAGTCAGAGAAATCAAAGAAGAAATCGAAGGAGAAGAAAATTTCGAAATCCCTAAATTATTTGTGTCTCCGGCTACTACTCCGCCTATAAACGCTCTGTTGTTGACGAGAAGCAGATCTGCACCGTATAGATCGTCGTCGTTGGCTTTCAGATTCTGGGAAGAAAATAACCAACGAGAAGTTGAATCACAGCAAAATGTGAGATCGGAGAAAACTGATTCGGAAGTTCCCATCGAGAAAATCAATGGTTTTCACGAGCCGGAGTATGTTGACAGAGATGAAGAAGAATTCACGAAGTTAAGATTTGTACGGCAGCCGGTGTTGACAAGGAGCAAATCGGAGCCGGCGAGGATCGGCGAGAAGATGATGGTGTTGCTTCCCGATGAAGAAGAAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

283

Amino Acids

32.69

Weight (kDa)

9.94

Isoelectric Point (pI)

90.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37100 AT5G03110
fragaria_vesca FvH4_6g15510
malus_domestica MD04G1102600.v1.1 MD12G1122400.v1.1
prunus_persica Prupe.6G240400_v2.0.a1
pyrus_communis pycom12g12120
rosa_chinensis RchiOBHm_Chr3g0469011
rosa_laevigata RLG00000024390
rosa_multiflora Rmu_co8173580.1_g000001 Rmu_sc0037667.1_g000001
rosa_roxburghii Rroxscaffold_2G00112190 Rroxscaffold_6G00412370
rosa_rugosa Rorug03G0098400
rosa_samantha Rh3AG147900 Rh3BG170500 Rh3DG204500
rosa_wichuraiana Rw3G013930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 321
AccII CGCG 3 cut(s) 138, 173, 311
AciI CCGC 7 cut(s) 56, 93, 171, 173, 176, 179, 536
AclWI GGATC 1 cut(s) 812
AcsI RAATTY 4 cut(s) 326, 400, 493, 740
AfaI GTAC 2 cut(s) 100, 762
AfiI CCNNNNNNNGG 1 cut(s) 65
AflIII ACRYGT 1 cut(s) 309
AgsI TTSAA 3 cut(s) 27, 406, 638
AloI GAACNNNNNNTCC 2 cut(s) 361, 393
Alw26I GTCTC 4 cut(s) 10, 204, 364, 525
AlwI GGATC 1 cut(s) 812
AlwNI CAGNNNCTG 1 cut(s) 609
Ama87I CYCGRG 1 cut(s) 267
AoxI GGCC 1 cut(s) 359
ApeKI GCWGC 1 cut(s) 766
ApoI RAATTY 4 cut(s) 326, 400, 493, 740
AspLEI GCGC 1 cut(s) 140
AsuC2I CCSGG 3 cut(s) 33, 230, 334
AsuII TTCGAA 1 cut(s) 498
AvaI CYCGRG 1 cut(s) 267
BauI CACGAG 1 cut(s) 707
BbvI GCAGC 1 cut(s) 778
BccI CCATC 2 cut(s) 692, 814
BceAI ACGGC 2 cut(s) 106, 779
BcnI CCSGG 3 cut(s) 33, 230, 334
BcoDI GTCTC 4 cut(s) 10, 204, 364, 525
BfaI CTAG 1 cut(s) 141
BglII AGATCT 1 cut(s) 569
BisI GCNGC 3 cut(s) 174, 177, 767
BlsI GCNGC 3 cut(s) 175, 178, 768
Bme1390I CCNGG 3 cut(s) 33, 230, 334
BmeT110I CYCGRG 1 cut(s) 267
BmiI GGNNCC 2 cut(s) 302, 795
BmrFI CCNGG 3 cut(s) 33, 230, 334
Bpu14I TTCGAA 1 cut(s) 498
BpuEI CTTGAG 1 cut(s) 171
BpuMI CCSGG 3 cut(s) 33, 230, 334
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 171
BsaXI ACNNNNNCTCC 4 cut(s) 100, 130, 361, 391
Bsc4I CCNNNNNNNGG 1 cut(s) 65
Bse118I RCCGGY 2 cut(s) 769, 796
BseDI CCNNGG 1 cut(s) 171
BseGI GGATG 1 cut(s) 439
BseLI CCNNNNNNNGG 1 cut(s) 65
BseXI GCAGC 1 cut(s) 778
BsgI GTGCAG 1 cut(s) 558
Bsh1236I CGCG 3 cut(s) 138, 173, 311
Bsh1285I CGRYCG 1 cut(s) 242
BshFI GGCC 1 cut(s) 361
BsiEI CGRYCG 1 cut(s) 242
BsiHKCI CYCGRG 1 cut(s) 267
BsiSI CCGG 8 cut(s) 32, 160, 229, 333, 524, 713, 770, 797
BslI CCNNNNNNNGG 1 cut(s) 65
BsmAI GTCTC 4 cut(s) 10, 204, 364, 525
BsmBI CGTCTC 1 cut(s) 204
BsnI GGCC 1 cut(s) 361
Bso31I GGTCTC 1 cut(s) 10
BsoBI CYCGRG 1 cut(s) 267
Bsp119I TTCGAA 1 cut(s) 498
Bsp143I GATC 6 cut(s) 239, 436, 569, 584, 656, 804
BspACI CCGC 7 cut(s) 56, 93, 171, 173, 176, 179, 536
BspANI GGCC 1 cut(s) 361
BspFNI CGCG 3 cut(s) 138, 173, 311
BspLI GGNNCC 2 cut(s) 302, 795
BspPI GGATC 1 cut(s) 812
BspT104I TTCGAA 1 cut(s) 498
BspTNI GGTCTC 1 cut(s) 10
BsrFI RCCGGY 2 cut(s) 769, 796
BssAI RCCGGY 2 cut(s) 769, 796
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 6 cut(s) 239, 436, 569, 584, 656, 804
BssSI CACGAG 1 cut(s) 707
Bst2BI CACGAG 1 cut(s) 707
Bst4CI ACNGT 2 cut(s) 195, 579
BstBI TTCGAA 1 cut(s) 498
BstC8I GCNNGC 1 cut(s) 798
BstDSI CCRYGG 1 cut(s) 171
BstF5I GGATG 1 cut(s) 439
BstFNI CGCG 3 cut(s) 138, 173, 311
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 6 cut(s) 242, 439, 572, 587, 659, 807
BstMAI GTCTC 4 cut(s) 10, 204, 364, 525
BstMBI GATC 6 cut(s) 239, 436, 569, 584, 656, 804
BstMCI CGRYCG 1 cut(s) 242
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstSCI CCNGG 3 cut(s) 31, 228, 332
BstUI CGCG 3 cut(s) 138, 173, 311
BstV1I GCAGC 1 cut(s) 778
BstX2I RGATCY 1 cut(s) 569
BstYI RGATCY 1 cut(s) 569
BsuRI GGCC 1 cut(s) 361
BtgI CCRYGG 1 cut(s) 171
BtsCI GGATG 1 cut(s) 439
Cac8I GCNNGC 1 cut(s) 798
CaiI CAGNNNCTG 1 cut(s) 609
CfoI GCGC 1 cut(s) 140
Cfr10I RCCGGY 2 cut(s) 769, 796
Cfr42I CCGCGG 1 cut(s) 174
CseI GACGC 1 cut(s) 300
Csp6I GTAC 2 cut(s) 99, 761
CviAII CATG 1 cut(s) 217
CviJI RGCY 9 cut(s) 185, 247, 301, 361, 527, 599, 712, 769, 796
CviKI_1 RGCY 9 cut(s) 185, 247, 301, 361, 527, 599, 712, 769, 796
CviQI GTAC 2 cut(s) 99, 761
DpnI GATC 6 cut(s) 241, 438, 571, 586, 658, 806
DpnII GATC 6 cut(s) 239, 436, 569, 584, 656, 804
EciI GGCGGA 2 cut(s) 108, 525
Eco31I GGTCTC 1 cut(s) 10
Eco88I CYCGRG 1 cut(s) 267
EcoRI GAATTC 1 cut(s) 740
Esp3I CGTCTC 1 cut(s) 204
FaeI CATG 1 cut(s) 220
FaiI YATR 6 cut(s) 65, 218, 321, 542, 582, 720
FatI CATG 1 cut(s) 216
Fnu4HI GCNGC 3 cut(s) 174, 177, 767
FokI GGATG 1 cut(s) 426
Fsp4HI GCNGC 3 cut(s) 174, 177, 767
FspBI CTAG 1 cut(s) 141
GlaI GCGC 1 cut(s) 139
GluI GCNGC 3 cut(s) 174, 177, 767
HaeIII GGCC 1 cut(s) 361
HapII CCGG 8 cut(s) 32, 160, 229, 333, 524, 713, 770, 797
HgaI GACGC 1 cut(s) 300
HhaI GCGC 1 cut(s) 140
Hin1II CATG 1 cut(s) 220
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HincII GTYRAC 4 cut(s) 235, 558, 724, 777
HindII GTYRAC 4 cut(s) 235, 558, 724, 777
HinfI GANTC 7 cut(s) 263, 372, 416, 452, 606, 638, 671
HpaII CCGG 8 cut(s) 32, 160, 229, 333, 524, 713, 770, 797
Hpy166II GTNNAC 4 cut(s) 235, 558, 724, 777
Hpy188III TCNNGA 7 cut(s) 188, 267, 269, 688, 707, 745, 833
Hpy8I GTNNAC 4 cut(s) 235, 558, 724, 777
Hpy99I CGWCG 6 cut(s) 199, 288, 291, 316, 592, 595
HpyAV CCTTC 5 cut(s) 123, 199, 400, 476, 839
HpyCH4III ACNGT 2 cut(s) 195, 579
HpyCH4IV ACGT 1 cut(s) 353
HpyCH4V TGCA 2 cut(s) 216, 575
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpySE526I ACGT 1 cut(s) 353
Hsp92II CATG 1 cut(s) 220
HspAI GCGC 1 cut(s) 138
KroI GCCGGC 1 cut(s) 796
KroNI GCCGGC 1 cut(s) 798
KspI CCGCGG 1 cut(s) 174
Kzo9I GATC 6 cut(s) 239, 436, 569, 584, 656, 804
LmnI GCTCC 3 cut(s) 306, 783, 793
Lsp1109I GCAGC 1 cut(s) 778
MaeI CTAG 1 cut(s) 141
MaeII ACGT 1 cut(s) 353
MaeIII GTNAC 2 cut(s) 132, 208
MalI GATC 6 cut(s) 241, 438, 571, 586, 658, 806
MboI GATC 6 cut(s) 239, 436, 569, 584, 656, 804
MboII GAAGA 7 cut(s) 485, 500, 626, 746, 749, 826, 851
MflI RGATCY 1 cut(s) 569
MluCI AATT 7 cut(s) 252, 326, 400, 431, 493, 509, 740
MluI ACGCGT 1 cut(s) 309
MlyI GAGTC 1 cut(s) 366
MmeI TCCRAC 2 cut(s) 377, 467
MnlI CCTC 3 cut(s) 119, 156, 795
MroNI GCCGGC 1 cut(s) 796
MseI TTAA 2 cut(s) 255, 752
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 8 cut(s) 32, 160, 229, 333, 524, 713, 770, 797
MspR9I CCNGG 3 cut(s) 33, 230, 334
MvnI CGCG 3 cut(s) 138, 173, 311
MwoI GCNNNNNNNGC 1 cut(s) 182
NaeI GCCGGC 1 cut(s) 798
NciI CCSGG 3 cut(s) 33, 230, 334
NdeII GATC 6 cut(s) 239, 436, 569, 584, 656, 804
NgoMIV GCCGGC 1 cut(s) 796
NlaIII CATG 1 cut(s) 220
NlaIV GGNNCC 2 cut(s) 302, 795
NmuCI GTSAC 1 cut(s) 132
NspV TTCGAA 1 cut(s) 498
PaeR7I CTCGAG 1 cut(s) 267
PcsI WCGNNNNNNNCGW 1 cut(s) 797
PdiI GCCGGC 1 cut(s) 798
PfeI GAWTC 6 cut(s) 263, 416, 452, 606, 638, 671
PkrI GCNGC 3 cut(s) 175, 178, 768
Ple19I CGATCG 1 cut(s) 242
PleI GAGTC 1 cut(s) 366
PpsI GAGTC 1 cut(s) 366
PsiI TTATAA 1 cut(s) 321
PspN4I GGNNCC 2 cut(s) 302, 795
PstNI CAGNNNCTG 1 cut(s) 609
PsuI RGATCY 1 cut(s) 569
PvuI CGATCG 1 cut(s) 242
RsaI GTAC 2 cut(s) 100, 762
RsaNI GTAC 2 cut(s) 99, 761
SacII CCGCGG 1 cut(s) 174
SaqAI TTAA 2 cut(s) 255, 752
SatI GCNGC 3 cut(s) 174, 177, 767
Sau3AI GATC 6 cut(s) 239, 436, 569, 584, 656, 804
SchI GAGTC 1 cut(s) 366
ScrFI CCNGG 3 cut(s) 33, 230, 334
SetI ASST 4 cut(s) 134, 210, 356, 850
Sfr274I CTCGAG 1 cut(s) 267
Sfr303I CCGCGG 1 cut(s) 174
SfuI TTCGAA 1 cut(s) 498
SgrBI CCGCGG 1 cut(s) 174
SlaI CTCGAG 1 cut(s) 267
SmlI CTYRAG 2 cut(s) 186, 267
SmoI CTYRAG 2 cut(s) 186, 267
Sse9I AATT 7 cut(s) 252, 326, 400, 431, 493, 509, 740
SsiI CCGC 7 cut(s) 56, 93, 171, 173, 176, 179, 536
SspMI CTAG 1 cut(s) 141
StyD4I CCNGG 3 cut(s) 31, 228, 332
TaaI ACNGT 2 cut(s) 195, 579
TaiI ACGT 1 cut(s) 356
TaqI TCGA 6 cut(s) 118, 242, 268, 480, 498, 687
TasI AATT 7 cut(s) 252, 326, 400, 431, 493, 509, 740
TatI WGTACW 1 cut(s) 98
TauI GCSGC 2 cut(s) 176, 179
TfiI GAWTC 6 cut(s) 263, 416, 452, 606, 638, 671
Tru1I TTAA 2 cut(s) 255, 752
Tru9I TTAA 2 cut(s) 255, 752
TseFI GTSAC 1 cut(s) 132
TseI GCWGC 1 cut(s) 766
Tsp45I GTSAC 1 cut(s) 132
TspDTI ATGAA 2 cut(s) 747, 852
TspGWI ACGGA 1 cut(s) 464
XapI RAATTY 4 cut(s) 326, 400, 493, 740
XhoI CTCGAG 1 cut(s) 267
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.