Rorug03G0098400

Protamine P1 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0013294
Physical Location & Seq
Forward (+)
7702836 .. 7703696
861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0098400.1

Sequence Viewer

Length: 366 bp
ATGGATGAAATAGAAGTGATGATAAGGAAGTTTGGGGACGACAAGAGTGCTCTGCTGGACCAATATGAGAGGCTCTCTGTGGAGATACAACTCAACCAGGCCATGTTAAAGCGGAGTCTCTCCGAGCCGACTCATCAAACTCGGTCGCAAGCAGCACTTTTGATTGGTCAAGGCCTTCAAGCACCACCACCGCAGCCGCCGCCATTGGTCAGTAAGAAACGTGGTGGCTCTGGCTTTCGCAAGGTTCTGAAGAAGATGATCAAACCTATTATTGGAAGAATGGGTGGTGGCAAGAAGAAGAAAGTACCAGATGTGGAAGTCGAGCCTAGGTTTTGGAAGACATTTAGTAGATCTCTTAGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.65

Weight (kDa)

10.4

Isoelectric Point (pI)

55.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37100 AT5G03110
fragaria_vesca FvH4_6g15510
malus_domestica MD04G1102600.v1.1 MD12G1122400.v1.1
prunus_persica Prupe.6G240400_v2.0.a1
pyrus_communis pycom12g12120
rosa_chinensis RchiOBHm_Chr3g0469011
rosa_laevigata RLG00000024390
rosa_multiflora Rmu_co8173580.1_g000001 Rmu_sc0037667.1_g000001
rosa_roxburghii Rroxscaffold_2G00112190 Rroxscaffold_6G00412370
rosa_rugosa Rorug03G0098400
rosa_samantha Rh3AG147900 Rh3BG170500 Rh3DG204500
rosa_wichuraiana Rw3G013930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 112, 191, 197, 200
AcuI CTGAAG 1 cut(s) 269
AfaI GTAC 1 cut(s) 306
AfiI CCNNNNNNNGG 1 cut(s) 272
AgsI TTSAA 1 cut(s) 179
AjnI CCWGG 1 cut(s) 96
Alw21I GWGCWC 1 cut(s) 52
Alw26I GTCTC 1 cut(s) 122
AoxI GGCC 2 cut(s) 99, 172
ApeKI GCWGC 2 cut(s) 152, 193
AspA2I CCTAGG 1 cut(s) 326
AspS9I GGNCC 1 cut(s) 58
AvaII GGWCC 1 cut(s) 58
AvrII CCTAGG 1 cut(s) 326
BbsI GAAGAC 1 cut(s) 344
Bbv12I GWGCWC 1 cut(s) 52
BbvI GCAGC 2 cut(s) 164, 205
BcgI CGANNNNNNTGC 2 cut(s) 29, 63
BciT130I CCWGG 1 cut(s) 98
BclI TGATCA 1 cut(s) 258
BcoDI GTCTC 1 cut(s) 122
BfaI CTAG 1 cut(s) 327
BglII AGATCT 1 cut(s) 350
BisI GCNGC 4 cut(s) 153, 194, 197, 200
BlnI CCTAGG 1 cut(s) 326
BlsI GCNGC 4 cut(s) 154, 195, 198, 201
Bme1390I CCNGG 1 cut(s) 98
Bme18I GGWCC 1 cut(s) 58
BmgT120I GGNCC 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 98
BpiI GAAGAC 1 cut(s) 344
BplI GAGNNNNNCTC 2 cut(s) 59, 91
BsaJI CCNNGG 1 cut(s) 326
Bsc4I CCNNNNNNNGG 1 cut(s) 272
BseBI CCWGG 1 cut(s) 98
BseDI CCNNGG 1 cut(s) 326
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 272
BseXI GCAGC 2 cut(s) 164, 205
Bsh1285I CGRYCG 1 cut(s) 146
BshFI GGCC 2 cut(s) 101, 174
BsiEI CGRYCG 1 cut(s) 146
BsiHKAI GWGCWC 1 cut(s) 52
BslFI GGGAC 1 cut(s) 50
BslI CCNNNNNNNGG 1 cut(s) 272
BsmAI GTCTC 1 cut(s) 122
BsmFI GGGAC 1 cut(s) 50
BsnI GGCC 2 cut(s) 101, 174
Bsp1286I GDGCHC 1 cut(s) 52
Bsp143I GATC 2 cut(s) 258, 350
BspACI CCGC 4 cut(s) 112, 191, 197, 200
BspANI GGCC 2 cut(s) 101, 174
BssECI CCNNGG 1 cut(s) 326
BssMI GATC 2 cut(s) 258, 350
BssT1I CCWWGG 1 cut(s) 326
Bst2UI CCWGG 1 cut(s) 98
BstC8I GCNNGC 1 cut(s) 150
BstDEI CTNAG 1 cut(s) 356
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 2 cut(s) 261, 353
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 2 cut(s) 258, 350
BstMCI CGRYCG 1 cut(s) 146
BstMWI GCNNNNNNNGC 1 cut(s) 199
BstNI CCWGG 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 96
BstV1I GCAGC 2 cut(s) 164, 205
BstV2I GAAGAC 1 cut(s) 344
BstX2I RGATCY 1 cut(s) 350
BstYI RGATCY 1 cut(s) 350
BsuRI GGCC 2 cut(s) 101, 174
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 150
Cfr13I GGNCC 1 cut(s) 58
Csp6I GTAC 1 cut(s) 305
CviAII CATG 1 cut(s) 103
CviJI RGCY 8 cut(s) 73, 101, 127, 174, 196, 228, 234, 325
CviKI_1 RGCY 8 cut(s) 73, 101, 127, 174, 196, 228, 234, 325
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 1 cut(s) 356
DpnI GATC 2 cut(s) 260, 352
DpnII GATC 2 cut(s) 258, 350
Eco130I CCWWGG 1 cut(s) 326
Eco147I AGGCCT 1 cut(s) 174
Eco47I GGWCC 1 cut(s) 58
Eco57I CTGAAG 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 96
EcoT14I CCWWGG 1 cut(s) 326
ErhI CCWWGG 1 cut(s) 326
FaeI CATG 1 cut(s) 106
FaiI YATR 2 cut(s) 66, 104
FalI AAGNNNNNCTT 2 cut(s) 141, 173
FaqI GGGAC 1 cut(s) 50
FatI CATG 1 cut(s) 102
FbaI TGATCA 1 cut(s) 258
Fnu4HI GCNGC 4 cut(s) 153, 194, 197, 200
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 4 cut(s) 153, 194, 197, 200
FspBI CTAG 1 cut(s) 327
GluI GCNGC 4 cut(s) 153, 194, 197, 200
HaeIII GGCC 2 cut(s) 101, 174
Hin1II CATG 1 cut(s) 106
HinfI GANTC 2 cut(s) 115, 130
Hpy188I TCNGA 2 cut(s) 124, 249
HpyAV CCTTC 1 cut(s) 185
HpyCH4IV ACGT 1 cut(s) 220
HpyF10VI GCNNNNNNNGC 1 cut(s) 199
HpyF3I CTNAG 1 cut(s) 356
HpySE526I ACGT 1 cut(s) 220
Hsp92II CATG 1 cut(s) 106
Ksp22I TGATCA 1 cut(s) 258
Kzo9I GATC 2 cut(s) 258, 350
LpnPI CCDG 5 cut(s) 41, 83, 110, 216, 321
Lsp1109I GCAGC 2 cut(s) 164, 205
MaeI CTAG 1 cut(s) 327
MaeII ACGT 1 cut(s) 220
MalI GATC 2 cut(s) 260, 352
MboI GATC 2 cut(s) 258, 350
MboII GAAGA 6 cut(s) 262, 265, 288, 307, 310, 349
MflI RGATCY 1 cut(s) 350
MhlI GDGCHC 1 cut(s) 52
MlyI GAGTC 2 cut(s) 124, 124
MnlI CCTC 1 cut(s) 63
MseI TTAA 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 98
MvaI CCWGG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 199
NdeII GATC 2 cut(s) 258, 350
NlaIII CATG 1 cut(s) 106
PceI AGGCCT 1 cut(s) 174
PkrI GCNGC 4 cut(s) 154, 195, 198, 201
PleI GAGTC 2 cut(s) 123, 124
PpsI GAGTC 2 cut(s) 123, 124
Psp6I CCWGG 1 cut(s) 96
PspGI CCWGG 1 cut(s) 96
PspPI GGNCC 1 cut(s) 58
PsuI RGATCY 1 cut(s) 350
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
SaqAI TTAA 1 cut(s) 107
SatI GCNGC 4 cut(s) 153, 194, 197, 200
Sau3AI GATC 2 cut(s) 258, 350
Sau96I GGNCC 1 cut(s) 58
SchI GAGTC 2 cut(s) 124, 124
ScrFI CCNGG 1 cut(s) 98
SduI GDGCHC 1 cut(s) 52
SetI ASST 4 cut(s) 223, 246, 268, 332
SinI GGWCC 1 cut(s) 58
SseBI AGGCCT 1 cut(s) 174
SsiI CCGC 4 cut(s) 112, 191, 197, 200
SspMI CTAG 1 cut(s) 327
StuI AGGCCT 1 cut(s) 174
StyD4I CCNGG 1 cut(s) 96
StyI CCWWGG 1 cut(s) 326
TaiI ACGT 1 cut(s) 223
TaqI TCGA 1 cut(s) 321
TaqII GACCGA 1 cut(s) 132
TauI GCSGC 2 cut(s) 199, 202
Tru1I TTAA 1 cut(s) 107
Tru9I TTAA 1 cut(s) 107
TseI GCWGC 2 cut(s) 152, 193
TspDTI ATGAA 1 cut(s) 21
VpaK11BI GGWCC 1 cut(s) 58
XmaJI CCTAGG 1 cut(s) 326
XspI CTAG 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.