Rroxscaffold_2G00112190

Protamine P1 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0013294
Physical Location & Seq
Reverse (-)
37176526 .. 37201502
24977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00112190.1

Sequence Viewer

Length: 1041 bp
ATGCCCCTCACCAATGAAGACGTTTCCCACTTGTGCAATTTTGGATCCTACATAATTTGTGGTACCGTGTCGGATGCGGTGCGTTTCAACAATACACAAACCTTGGTGGTGGCTGTGGGAAAAAGCAAGGTCTTGGAACAAATGAATTGTGCTCATCTGCGGTTCCAGGAGGAGCATCAACTACTGGAGACCAAGTTTGCCACAGGCCTTAAGGTGCCCCCTCGCTGGTTTTATCTTCCAACCCAATTCTACAAAGTCGTCTCCTGCGAGAACTCGCTTCGACTGGAGGATGTCTCTATAAAGTGTACGACAAACCCCAATCTAGAACTCTGTCGGTTAGGTCGGGTGTTCGTCAACCATAGTAGACGTTGGAAGGATGCACAGAAACCCCGAGTTGTGGAGAGGACAATAACGCTTAAGATCGACGATGACCCAAGTGGGGTGTTGGGATTGAGGATTTTGGATGTGTTTCCTCGTGATTCCCGTGAGTGGAATGACGTCTCTTTGTTGGGGTCGGGCGGTCGTCCTCCGCGGCTTCTTCGCTACCCCGACGGGGAAGATGTGTCGGAGCTCCGACCCGAAAATGGTGCGGGTGGATCCAAAACGCCATGTTACGCAACGATTTTCCGTGGAAAATCTTTTAAATCAAAAAAGCCAAAAGTTGAGACCCAATTTGGGGAAGCAATTGATGGGTTTTGTTCAGATGAAGAAGAAGAAGAAGAACACGAAGAACCAGAATTTGAAAGAAAAGCCAAGGCTTTTGTTGCTTCTAGCTTTTTGCTACCCAAGAACGCTTTGCTCTTAACTCGATGCAGATCTACGCCGTATGGTTGTCTTCTTTGGCTAGTAGATTTTGGGGTTCACCGAGACAAAGCTAAAGAAGAAACAAGGGAAGAAGAACGAGAGAAAAACGGGGAAGCGAACGGATCATCGAGCCCCAAAATAGAGAAAATGGCGGTGAAAATGAGAGACCCACATTGGAAAGAGAGTCCATATCGGAACAAGAATCGAGAAGCGAGCAACAAAATGAAGAAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

346

Amino Acids

39.57

Weight (kDa)

8.58

Isoelectric Point (pI)

46.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37100 AT5G03110
fragaria_vesca FvH4_6g15510
malus_domestica MD04G1102600.v1.1 MD12G1122400.v1.1
prunus_persica Prupe.6G240400_v2.0.a1
pyrus_communis pycom12g12120
rosa_chinensis RchiOBHm_Chr3g0469011
rosa_laevigata RLG00000024390
rosa_multiflora Rmu_co8173580.1_g000001 Rmu_sc0037667.1_g000001
rosa_roxburghii Rroxscaffold_2G00112190 Rroxscaffold_6G00412370
rosa_rugosa Rorug03G0098400
rosa_samantha Rh3AG147900 Rh3BG170500 Rh3DG204500
rosa_wichuraiana Rw3G013930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 501
Acc65I GGTACC 1 cut(s) 62
AccB1I GGYRCC 2 cut(s) 62, 214
AccI GTMKAC 1 cut(s) 364
AccII CGCG 1 cut(s) 532
AciI CCGC 7 cut(s) 77, 160, 519, 530, 532, 590, 956
AclWI GGATC 5 cut(s) 39, 52, 591, 604, 934
AcsI RAATTY 1 cut(s) 737
AcyI GRCGYC 1 cut(s) 498
AfaI GTAC 2 cut(s) 64, 307
AfiI CCNNNNNNNGG 8 cut(s) 225, 397, 439, 489, 553, 584, 675, 676
AflII CTTAAG 2 cut(s) 209, 416
AgsI TTSAA 2 cut(s) 88, 743
AjnI CCWGG 1 cut(s) 165
AluBI AGCT 3 cut(s) 571, 774, 875
AluI AGCT 3 cut(s) 571, 774, 875
Alw21I GWGCWC 2 cut(s) 154, 573
Alw26I GTCTC 7 cut(s) 182, 265, 298, 505, 659, 861, 963
AlwI GGATC 5 cut(s) 39, 52, 591, 604, 934
Ama87I CYCGRG 1 cut(s) 390
AoxI GGCC 1 cut(s) 205
ApoI RAATTY 1 cut(s) 737
Asp718I GGTACC 1 cut(s) 62
AsuHPI GGTGA 2 cut(s) 854, 970
AvaI CYCGRG 1 cut(s) 390
BaeGI GKGCMC 1 cut(s) 219
BamHI GGATCC 2 cut(s) 44, 596
BanI GGYRCC 2 cut(s) 62, 214
BanII GRGCYC 2 cut(s) 573, 938
BauI CACGAG 1 cut(s) 474
BbsI GAAGAC 2 cut(s) 24, 827
Bbv12I GWGCWC 2 cut(s) 154, 573
BccI CCATC 1 cut(s) 683
BceAI ACGGC 1 cut(s) 808
BcgI CGANNNNNNTGC 2 cut(s) 569, 603
BciT130I CCWGG 1 cut(s) 167
BcoDI GTCTC 7 cut(s) 182, 265, 298, 505, 659, 861, 963
BfaI CTAG 3 cut(s) 323, 771, 845
BfrI CTTAAG 2 cut(s) 209, 416
BglII AGATCT 1 cut(s) 815
BisI GCNGC 1 cut(s) 533
BlsI GCNGC 1 cut(s) 534
Bme1390I CCNGG 1 cut(s) 167
BmeT110I CYCGRG 1 cut(s) 390
BmiI GGNNCC 5 cut(s) 46, 64, 164, 216, 598
BmrFI CCNGG 1 cut(s) 167
BmsI GCATC 4 cut(s) 64, 184, 367, 800
BpiI GAAGAC 2 cut(s) 24, 827
BplI GAGNNNNNCTC 2 cut(s) 278, 310
BpmI CTGGAG 2 cut(s) 206, 305
BsaBI GATNNNNATC 1 cut(s) 814
BsaHI GRCGYC 1 cut(s) 498
BsaI GGTCTC 3 cut(s) 182, 659, 963
BsaJI CCNNGG 4 cut(s) 102, 530, 628, 753
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bsc4I CCNNNNNNNGG 8 cut(s) 225, 397, 439, 489, 553, 584, 675, 676
Bse1I ACTGG 2 cut(s) 189, 288
Bse8I GATNNNNATC 1 cut(s) 814
BseBI CCWGG 1 cut(s) 167
BseDI CCNNGG 4 cut(s) 102, 530, 628, 753
BseGI GGATG 4 cut(s) 79, 295, 382, 469
BseJI GATNNNNATC 1 cut(s) 814
BseLI CCNNNNNNNGG 8 cut(s) 225, 397, 439, 489, 553, 584, 675, 676
BseNI ACTGG 2 cut(s) 189, 288
BseRI GAGGAG 1 cut(s) 185
BseSI GKGCMC 1 cut(s) 219
Bsh1236I CGCG 1 cut(s) 532
Bsh1285I CGRYCG 1 cut(s) 523
BshFI GGCC 1 cut(s) 207
BshNI GGYRCC 2 cut(s) 62, 214
BsiEI CGRYCG 1 cut(s) 523
BsiHKAI GWGCWC 2 cut(s) 154, 573
BsiHKCI CYCGRG 1 cut(s) 390
BslI CCNNNNNNNGG 8 cut(s) 225, 397, 439, 489, 553, 584, 675, 676
BsmAI GTCTC 7 cut(s) 182, 265, 298, 505, 659, 861, 963
BsmBI CGTCTC 2 cut(s) 265, 505
BsnI GGCC 1 cut(s) 207
Bso31I GGTCTC 3 cut(s) 182, 659, 963
BsoBI CYCGRG 1 cut(s) 390
Bsp1286I GDGCHC 4 cut(s) 154, 219, 573, 938
Bsp143I GATC 5 cut(s) 44, 420, 596, 815, 926
BspACI CCGC 7 cut(s) 77, 160, 519, 530, 532, 590, 956
BspANI GGCC 1 cut(s) 207
BspFNI CGCG 1 cut(s) 532
BspLI GGNNCC 5 cut(s) 46, 64, 164, 216, 598
BspPI GGATC 5 cut(s) 39, 52, 591, 604, 934
BspT107I GGYRCC 2 cut(s) 62, 214
BspTI CTTAAG 2 cut(s) 209, 416
BspTNI GGTCTC 3 cut(s) 182, 659, 963
BsrI ACTGG 2 cut(s) 189, 288
BssECI CCNNGG 4 cut(s) 102, 530, 628, 753
BssMI GATC 5 cut(s) 44, 420, 596, 815, 926
BssNI GRCGYC 1 cut(s) 498
BssSI CACGAG 1 cut(s) 474
BssT1I CCWWGG 2 cut(s) 102, 753
Bst2BI CACGAG 1 cut(s) 474
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 67
BstACI GRCGYC 1 cut(s) 498
BstAFI CTTAAG 2 cut(s) 209, 416
BstC8I GCNNGC 1 cut(s) 1018
BstDSI CCRYGG 2 cut(s) 530, 628
BstF5I GGATG 4 cut(s) 79, 295, 382, 469
BstFNI CGCG 1 cut(s) 532
BstKTI GATC 5 cut(s) 47, 423, 599, 818, 929
BstMAI GTCTC 7 cut(s) 182, 265, 298, 505, 659, 861, 963
BstMBI GATC 5 cut(s) 44, 420, 596, 815, 926
BstMCI CGRYCG 1 cut(s) 523
BstMWI GCNNNNNNNGC 1 cut(s) 764
BstNI CCWGG 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 165
BstSLI GKGCMC 1 cut(s) 219
BstUI CGCG 1 cut(s) 532
BstV2I GAAGAC 2 cut(s) 24, 827
BstX2I RGATCY 3 cut(s) 44, 596, 815
BstYI RGATCY 3 cut(s) 44, 596, 815
BsuRI GGCC 1 cut(s) 207
BtgI CCRYGG 2 cut(s) 530, 628
BtsCI GGATG 4 cut(s) 79, 295, 382, 469
Cac8I GCNNGC 1 cut(s) 1018
Cfr42I CCGCGG 1 cut(s) 533
Csp6I GTAC 2 cut(s) 63, 306
CviAII CATG 1 cut(s) 609
CviQI GTAC 2 cut(s) 63, 306
DpnI GATC 5 cut(s) 46, 422, 598, 817, 928
DpnII GATC 5 cut(s) 44, 420, 596, 815, 926
DraI TTTAAA 1 cut(s) 643
Ecl136II GAGCTC 1 cut(s) 571
Eco130I CCWWGG 2 cut(s) 102, 753
Eco147I AGGCCT 1 cut(s) 207
Eco24I GRGCYC 2 cut(s) 573, 938
Eco31I GGTCTC 3 cut(s) 182, 659, 963
Eco53kI GAGCTC 1 cut(s) 571
Eco88I CYCGRG 1 cut(s) 390
EcoICRI GAGCTC 1 cut(s) 571
EcoRII CCWGG 1 cut(s) 165
EcoT14I CCWWGG 2 cut(s) 102, 753
EcoT38I GRGCYC 2 cut(s) 573, 938
ErhI CCWWGG 2 cut(s) 102, 753
Esp3I CGTCTC 2 cut(s) 265, 505
FaeI CATG 1 cut(s) 612
FaiI YATR 6 cut(s) 53, 299, 360, 610, 828, 994
FatI CATG 1 cut(s) 608
FauI CCCGC 1 cut(s) 583
FblI GTMKAC 1 cut(s) 364
Fnu4HI GCNGC 1 cut(s) 533
FokI GGATG 4 cut(s) 86, 302, 389, 476
FriOI GRGCYC 2 cut(s) 573, 938
Fsp4HI GCNGC 1 cut(s) 533
FspBI CTAG 3 cut(s) 323, 771, 845
GluI GCNGC 1 cut(s) 533
GsuI CTGGAG 2 cut(s) 206, 305
HaeIII GGCC 1 cut(s) 207
Hin1I GRCGYC 1 cut(s) 498
Hin1II CATG 1 cut(s) 612
HincII GTYRAC 1 cut(s) 355
HindII GTYRAC 1 cut(s) 355
HinfI GANTC 3 cut(s) 479, 988, 1006
HphI GGTGA 2 cut(s) 854, 970
Hpy166II GTNNAC 4 cut(s) 306, 355, 365, 862
Hpy188I TCNGA 5 cut(s) 73, 568, 575, 703, 999
Hpy188III TCNNGA 3 cut(s) 323, 476, 1010
Hpy8I GTNNAC 4 cut(s) 306, 355, 365, 862
Hpy99I CGWCG 2 cut(s) 428, 554
HpyAV CCTTC 1 cut(s) 367
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4IV ACGT 3 cut(s) 21, 367, 498
HpyCH4V TGCA 3 cut(s) 36, 380, 813
HpyF10VI GCNNNNNNNGC 1 cut(s) 764
HpySE526I ACGT 3 cut(s) 21, 367, 498
Hsp92I GRCGYC 1 cut(s) 498
Hsp92II CATG 1 cut(s) 612
KpnI GGTACC 1 cut(s) 66
KspI CCGCGG 1 cut(s) 533
Kzo9I GATC 5 cut(s) 44, 420, 596, 815, 926
LmnI GCTCC 3 cut(s) 172, 568, 576
LpnPI CCDG 8 cut(s) 152, 170, 179, 189, 211, 269, 277, 747
LweI GCATC 4 cut(s) 64, 184, 367, 800
MaeI CTAG 3 cut(s) 323, 771, 845
MaeII ACGT 3 cut(s) 21, 367, 498
MaeIII GTNAC 1 cut(s) 611
MalI GATC 5 cut(s) 46, 422, 598, 817, 928
MboI GATC 5 cut(s) 44, 420, 596, 815, 926
MfeI CAATTG 1 cut(s) 684
MflI RGATCY 3 cut(s) 44, 596, 815
MhlI GDGCHC 4 cut(s) 154, 219, 573, 938
MluCI AATT 7 cut(s) 37, 54, 145, 245, 671, 684, 737
MlyI GAGTC 1 cut(s) 997
MmeI TCCRAC 5 cut(s) 51, 263, 350, 546, 598
MnlI CCTC 8 cut(s) 17, 163, 231, 280, 396, 447, 483, 537
MseI TTAA 4 cut(s) 210, 417, 642, 803
MspA1I CMGCKG 1 cut(s) 532
MspCI CTTAAG 2 cut(s) 209, 416
MspR9I CCNGG 1 cut(s) 167
MunI CAATTG 1 cut(s) 684
MvaI CCWGG 1 cut(s) 167
MvnI CGCG 1 cut(s) 532
MwoI GCNNNNNNNGC 1 cut(s) 764
NdeII GATC 5 cut(s) 44, 420, 596, 815, 926
NlaIII CATG 1 cut(s) 612
NlaIV GGNNCC 5 cut(s) 46, 64, 164, 216, 598
PceI AGGCCT 1 cut(s) 207
PcsI WCGNNNNNNNCGW 2 cut(s) 264, 481
PfeI GAWTC 2 cut(s) 479, 1006
PfoI TCCNGGA 1 cut(s) 165
PkrI GCNGC 1 cut(s) 534
PleI GAGTC 1 cut(s) 996
PpsI GAGTC 1 cut(s) 996
Psp124BI GAGCTC 1 cut(s) 573
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PspN4I GGNNCC 5 cut(s) 46, 64, 164, 216, 598
PsuI RGATCY 3 cut(s) 44, 596, 815
RsaI GTAC 2 cut(s) 64, 307
RsaNI GTAC 2 cut(s) 63, 306
SacI GAGCTC 1 cut(s) 573
SacII CCGCGG 1 cut(s) 533
SaqAI TTAA 4 cut(s) 210, 417, 642, 803
SatI GCNGC 1 cut(s) 533
Sau3AI GATC 5 cut(s) 44, 420, 596, 815, 926
SchI GAGTC 1 cut(s) 997
ScrFI CCNGG 1 cut(s) 167
SduI GDGCHC 4 cut(s) 154, 219, 573, 938
SfaNI GCATC 4 cut(s) 64, 184, 367, 800
Sfr303I CCGCGG 1 cut(s) 533
SgrBI CCGCGG 1 cut(s) 533
SmlI CTYRAG 2 cut(s) 209, 416
SmoI CTYRAG 2 cut(s) 209, 416
Sse9I AATT 7 cut(s) 37, 54, 145, 245, 671, 684, 737
SseBI AGGCCT 1 cut(s) 207
SsiI CCGC 7 cut(s) 77, 160, 519, 530, 532, 590, 956
SspMI CTAG 3 cut(s) 323, 771, 845
SstI GAGCTC 1 cut(s) 573
StuI AGGCCT 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 165
StyI CCWWGG 2 cut(s) 102, 753
TaaI ACNGT 1 cut(s) 67
TaiI ACGT 3 cut(s) 24, 370, 501
TaqI TCGA 5 cut(s) 280, 423, 808, 932, 1009
TasI AATT 7 cut(s) 37, 54, 145, 245, 671, 684, 737
TauI GCSGC 1 cut(s) 535
TfiI GAWTC 2 cut(s) 479, 1006
Tru1I TTAA 4 cut(s) 210, 417, 642, 803
Tru9I TTAA 4 cut(s) 210, 417, 642, 803
TspDTI ATGAA 3 cut(s) 30, 158, 720
TspGWI ACGGA 2 cut(s) 617, 939
Vha464I CTTAAG 2 cut(s) 209, 416
XapI RAATTY 1 cut(s) 737
XbaI TCTAGA 1 cut(s) 322
XmiI GTMKAC 1 cut(s) 364
XspI CTAG 3 cut(s) 323, 771, 845
ZraI GACGTC 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.