Rw3G013930

Protamine P1 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0013294
Physical Location & Seq
Forward (+)
13669321 .. 13670620
1300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G013930.1

Sequence Viewer

Length: 1014 bp
ATGAAGCTACCCGCGAAGCCCATATCGAGTCCGGGTCGGAGCGACAAGTTCCCGCCGCCGTTGATGAGGTTTCTGAGGAGCAATGTCGGGAGCAAAAGCCGAGGTCGGTTACGTGCGAGTCCGATGTTCGTGAGGAAGAAGAACACGACCGCCGTCGAAACACAAGAGCCGACGTCGCCGAAGGTGACCTGCATGGGCCAGGTTCGGGTCAGGCGGTCGTCCTCCGCGGCTTGTTCGAGACCCGGACGGGGAAGAAGTGCCGGAGCTCCGACCCTGAAACGGTTCGGGTGGATCCAAAAAGCTGTGTTCTGCAGCGATTTTCCCGGGAAAATCAAGCCCAAGTCTTGCAGACACCTCTGGCGGAAATGGGTTCCGTTTTTTCAAGTTGGGTTTTGCACCAGAGTTCAAATCGAAAAAGACCCACCAAAAGTTGAGACCCAATTTGGGGAAGCAACTGATGGGTTTTGTTCAGGTGATGATGAAGAAGAAGAAGAAGAACCAGAATTTGAAAGAAAAGCCAAGGCTTTTGCTGCTTCTAGCTTTTCGCCACCCAAGAACGCTTTGCTCTTAACTCGATGCAGATCTGCGCCGTACAGGTCGTCTTCTTTGGCTAGTAGATTTTGGGGCTCACCAGACAGAGCTAAAGAAGAAACAGGGGAAGAAGAACAGAGCAAAACAGGGGAAGCAGAACAGAGCATTGAGCCCCAAAACAGAGAAAATGGCAGCAAAAATAAGAGACCCACATCGGAAAGAGAGTCCATTTCGGAACAAGAATCGAGAACTGAGCAACAAAATGAAGAAAAGATGCAATTTTTCAAGGGATTGGAAAACTCAATAAGAGAAAGAATGGCCAAATCTGCGAGCATTGAATATTCGAATGAAGTGGAGTTCGGATCAGATTCTGCTCGGCCTATGATTCTCACAAGGTGTAAGTCAGAACCAGCAAGAACAGCAGCAGAGAAGCTCGACCCAGATTCGTTGATTCATTCCCACCGATTGTTTGTGATTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

337

Amino Acids

37.99

Weight (kDa)

9.49

Isoelectric Point (pI)

68.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37100 AT5G03110
fragaria_vesca FvH4_6g15510
malus_domestica MD04G1102600.v1.1 MD12G1122400.v1.1
prunus_persica Prupe.6G240400_v2.0.a1
pyrus_communis pycom12g12120
rosa_chinensis RchiOBHm_Chr3g0469011
rosa_laevigata RLG00000024390
rosa_multiflora Rmu_co8173580.1_g000001 Rmu_sc0037667.1_g000001
rosa_roxburghii Rroxscaffold_2G00112190 Rroxscaffold_6G00412370
rosa_rugosa Rorug03G0098400
rosa_samantha Rh3AG147900 Rh3BG170500 Rh3DG204500
rosa_wichuraiana Rw3G013930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 176
Acc36I ACCTGC 1 cut(s) 197
AccII CGCG 2 cut(s) 14, 227
AciI CCGC 8 cut(s) 12, 53, 56, 150, 214, 225, 227, 361
AclWI GGATC 3 cut(s) 286, 299, 901
AcoI YGGCCR 1 cut(s) 849
AcsI RAATTY 1 cut(s) 503
AcyI GRCGYC 1 cut(s) 173
AdeI CACNNNGTG 1 cut(s) 927
AfaI GTAC 1 cut(s) 593
AfiI CCNNNNNNNGG 5 cut(s) 205, 248, 279, 444, 445
AgsI TTSAA 5 cut(s) 383, 407, 509, 817, 869
AjnI CCWGG 1 cut(s) 198
AluBI AGCT 6 cut(s) 7, 266, 302, 540, 641, 964
AluI AGCT 6 cut(s) 7, 266, 302, 540, 641, 964
Alw21I GWGCWC 1 cut(s) 268
Alw26I GTCTC 3 cut(s) 232, 428, 730
AlwI GGATC 3 cut(s) 286, 299, 901
AlwNI CAGNNNCTG 1 cut(s) 902
Ama87I CYCGRG 1 cut(s) 323
AoxI GGCC 3 cut(s) 196, 849, 908
ApeKI GCWGC 4 cut(s) 312, 530, 723, 953
ApoI RAATTY 1 cut(s) 503
AseI ATTAAT 1 cut(s) 1008
Asp700I GAANNNNTTC 1 cut(s) 281
AspLEI GCGC 1 cut(s) 589
AspS9I GGNCC 1 cut(s) 196
AsuC2I CCSGG 4 cut(s) 33, 243, 324, 325
AsuHPI GGTGA 3 cut(s) 196, 485, 621
AsuII TTCGAA 1 cut(s) 875
AvaI CYCGRG 1 cut(s) 323
BalI TGGCCA 1 cut(s) 851
BamHI GGATCC 1 cut(s) 291
BanII GRGCYC 3 cut(s) 268, 629, 705
BbsI GAAGAC 1 cut(s) 594
Bbv12I GWGCWC 1 cut(s) 268
BbvI GCAGC 4 cut(s) 324, 517, 735, 965
BccI CCATC 1 cut(s) 452
BceAI ACGGC 3 cut(s) 43, 137, 574
BciT130I CCWGG 1 cut(s) 200
BcnI CCSGG 4 cut(s) 33, 243, 324, 325
BcoDI GTCTC 3 cut(s) 232, 428, 730
BfaI CTAG 2 cut(s) 537, 612
BfmI CTRYAG 1 cut(s) 310
BfuAI ACCTGC 1 cut(s) 197
BglII AGATCT 1 cut(s) 581
BisI GCNGC 6 cut(s) 56, 228, 313, 531, 724, 954
BlsI GCNGC 6 cut(s) 57, 229, 314, 532, 725, 955
Bme1390I CCNGG 5 cut(s) 33, 200, 243, 324, 325
BmeT110I CYCGRG 1 cut(s) 323
BmgT120I GGNCC 1 cut(s) 196
BmiI GGNNCC 2 cut(s) 293, 372
BmrFI CCNGG 5 cut(s) 33, 200, 243, 324, 325
BmsI GCATC 2 cut(s) 566, 795
BoxI GACNNNNGTC 1 cut(s) 152
BpiI GAAGAC 1 cut(s) 594
Bpu14I TTCGAA 1 cut(s) 875
BpuMI CCSGG 4 cut(s) 33, 243, 324, 325
BsaAI YACGTR 1 cut(s) 113
BsaBI GATNNNNATC 1 cut(s) 580
BsaHI GRCGYC 1 cut(s) 173
BsaI GGTCTC 3 cut(s) 232, 428, 730
BsaJI CCNNGG 4 cut(s) 100, 225, 323, 519
Bsc4I CCNNNNNNNGG 5 cut(s) 205, 248, 279, 444, 445
Bse3DI GCAATG 1 cut(s) 88
Bse8I GATNNNNATC 1 cut(s) 580
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 4 cut(s) 100, 225, 323, 519
BseJI GATNNNNATC 1 cut(s) 580
BseLI CCNNNNNNNGG 5 cut(s) 205, 248, 279, 444, 445
BseMI GCAATG 1 cut(s) 88
BseMII CTCAG 2 cut(s) 65, 774
BseRI GAGGAG 1 cut(s) 91
BseXI GCAGC 4 cut(s) 324, 517, 735, 965
Bsh1236I CGCG 2 cut(s) 14, 227
Bsh1285I CGRYCG 2 cut(s) 150, 218
BshFI GGCC 3 cut(s) 198, 851, 910
BsiEI CGRYCG 2 cut(s) 150, 218
BsiHKAI GWGCWC 1 cut(s) 268
BsiHKCI CYCGRG 1 cut(s) 323
BsiSI CCGG 4 cut(s) 32, 243, 261, 324
BslI CCNNNNNNNGG 5 cut(s) 205, 248, 279, 444, 445
BsmAI GTCTC 3 cut(s) 232, 428, 730
BsnI GGCC 3 cut(s) 198, 851, 910
Bso31I GGTCTC 3 cut(s) 232, 428, 730
BsoBI CYCGRG 1 cut(s) 323
Bsp119I TTCGAA 1 cut(s) 875
Bsp1286I GDGCHC 3 cut(s) 268, 629, 705
Bsp143I GATC 3 cut(s) 291, 581, 893
BspACI CCGC 8 cut(s) 12, 53, 56, 150, 214, 225, 227, 361
BspANI GGCC 3 cut(s) 198, 851, 910
BspCNI CTCAG 2 cut(s) 66, 775
BspFNI CGCG 2 cut(s) 14, 227
BspLI GGNNCC 2 cut(s) 293, 372
BspMAI CTGCAG 1 cut(s) 314
BspMI ACCTGC 1 cut(s) 197
BspPI GGATC 3 cut(s) 286, 299, 901
BspT104I TTCGAA 1 cut(s) 875
BspTNI GGTCTC 3 cut(s) 232, 428, 730
BsrDI GCAATG 1 cut(s) 88
BssECI CCNNGG 4 cut(s) 100, 225, 323, 519
BssMI GATC 3 cut(s) 291, 581, 893
BssNI GRCGYC 1 cut(s) 173
BssT1I CCWWGG 1 cut(s) 519
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 282
BstACI GRCGYC 1 cut(s) 173
BstBAI YACGTR 1 cut(s) 113
BstBI TTCGAA 1 cut(s) 875
BstC8I GCNNGC 1 cut(s) 862
BstDEI CTNAG 2 cut(s) 74, 783
BstDSI CCRYGG 1 cut(s) 225
BstEII GGTNACC 1 cut(s) 184
BstFNI CGCG 2 cut(s) 14, 227
BstHHI GCGC 1 cut(s) 589
BstKTI GATC 3 cut(s) 294, 584, 896
BstMAI GTCTC 3 cut(s) 232, 428, 730
BstMBI GATC 3 cut(s) 291, 581, 893
BstMCI CGRYCG 2 cut(s) 150, 218
BstMWI GCNNNNNNNGC 4 cut(s) 175, 530, 857, 950
BstNI CCWGG 1 cut(s) 200
BstPAI GACNNNNGTC 1 cut(s) 152
BstPI GGTNACC 1 cut(s) 184
BstSCI CCNGG 5 cut(s) 31, 198, 241, 322, 323
BstSFI CTRYAG 1 cut(s) 310
BstUI CGCG 2 cut(s) 14, 227
BstV1I GCAGC 4 cut(s) 324, 517, 735, 965
BstV2I GAAGAC 1 cut(s) 594
BstX2I RGATCY 2 cut(s) 291, 581
BstYI RGATCY 2 cut(s) 291, 581
BsuRI GGCC 3 cut(s) 198, 851, 910
BtgI CCRYGG 1 cut(s) 225
BveI ACCTGC 1 cut(s) 197
Cac8I GCNNGC 1 cut(s) 862
CaiI CAGNNNCTG 1 cut(s) 902
CfoI GCGC 1 cut(s) 589
Cfr13I GGNCC 1 cut(s) 196
Cfr42I CCGCGG 1 cut(s) 228
Cfr9I CCCGGG 1 cut(s) 323
Csp6I GTAC 1 cut(s) 592
CviAII CATG 1 cut(s) 193
CviQI GTAC 1 cut(s) 592
DdeI CTNAG 2 cut(s) 74, 783
DpnI GATC 3 cut(s) 293, 583, 895
DpnII GATC 3 cut(s) 291, 581, 893
DraIII CACNNNGTG 1 cut(s) 927
EaeI YGGCCR 1 cut(s) 849
EciI GGCGGA 1 cut(s) 376
Ecl136II GAGCTC 1 cut(s) 266
Eco130I CCWWGG 1 cut(s) 519
Eco24I GRGCYC 3 cut(s) 268, 629, 705
Eco31I GGTCTC 3 cut(s) 232, 428, 730
Eco53kI GAGCTC 1 cut(s) 266
Eco88I CYCGRG 1 cut(s) 323
Eco91I GGTNACC 1 cut(s) 184
EcoICRI GAGCTC 1 cut(s) 266
EcoO65I GGTNACC 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 519
EcoT38I GRGCYC 3 cut(s) 268, 629, 705
ErhI CCWWGG 1 cut(s) 519
FaeI CATG 1 cut(s) 196
FaiI YATR 3 cut(s) 23, 194, 914
FatI CATG 1 cut(s) 192
FauI CCCGC 2 cut(s) 19, 60
Fnu4HI GCNGC 6 cut(s) 56, 228, 313, 531, 724, 954
FriOI GRGCYC 3 cut(s) 268, 629, 705
Fsp4HI GCNGC 6 cut(s) 56, 228, 313, 531, 724, 954
FspBI CTAG 2 cut(s) 537, 612
GlaI GCGC 1 cut(s) 588
GluI GCNGC 6 cut(s) 56, 228, 313, 531, 724, 954
HaeIII GGCC 3 cut(s) 198, 851, 910
HapII CCGG 4 cut(s) 32, 243, 261, 324
HhaI GCGC 1 cut(s) 589
Hin1I GRCGYC 1 cut(s) 173
Hin1II CATG 1 cut(s) 196
Hin6I GCGC 1 cut(s) 587
HinP1I GCGC 1 cut(s) 587
HinfI GANTC 8 cut(s) 28, 118, 755, 773, 899, 916, 974, 982
HpaII CCGG 4 cut(s) 32, 243, 261, 324
HphI GGTGA 3 cut(s) 196, 485, 621
Hpy188I TCNGA 9 cut(s) 39, 75, 123, 270, 748, 766, 893, 898, 937
Hpy188III TCNNGA 4 cut(s) 88, 130, 237, 777
Hpy99I CGWCG 3 cut(s) 158, 175, 178
HpyAV CCTTC 1 cut(s) 175
HpyCH4III ACNGT 1 cut(s) 282
HpyCH4IV ACGT 2 cut(s) 112, 173
HpyCH4V TGCA 6 cut(s) 192, 312, 348, 396, 579, 808
HpyF10VI GCNNNNNNNGC 4 cut(s) 175, 530, 857, 950
HpyF3I CTNAG 2 cut(s) 74, 783
HpySE526I ACGT 2 cut(s) 112, 173
Hsp92I GRCGYC 1 cut(s) 173
Hsp92II CATG 1 cut(s) 196
HspAI GCGC 1 cut(s) 587
KspI CCGCGG 1 cut(s) 228
Kzo9I GATC 3 cut(s) 291, 581, 893
LmnI GCTCC 5 cut(s) 39, 78, 90, 263, 271
Lsp1109I GCAGC 4 cut(s) 324, 517, 735, 965
LweI GCATC 2 cut(s) 566, 795
MaeI CTAG 2 cut(s) 537, 612
MaeII ACGT 2 cut(s) 112, 173
MaeIII GTNAC 2 cut(s) 108, 184
MalI GATC 3 cut(s) 293, 583, 895
MboI GATC 3 cut(s) 291, 581, 893
MflI RGATCY 2 cut(s) 291, 581
MhlI GDGCHC 3 cut(s) 268, 629, 705
MlsI TGGCCA 1 cut(s) 851
MluCI AATT 4 cut(s) 440, 503, 809, 1009
MluNI TGGCCA 1 cut(s) 851
MlyI GAGTC 3 cut(s) 37, 127, 764
MmeI TCCRAC 2 cut(s) 17, 293
MnlI CCTC 6 cut(s) 60, 69, 95, 126, 232, 365
Mox20I TGGCCA 1 cut(s) 851
MroXI GAANNNNTTC 1 cut(s) 281
MscI TGGCCA 1 cut(s) 851
MseI TTAA 2 cut(s) 569, 1008
Msp20I TGGCCA 1 cut(s) 851
MspA1I CMGCKG 1 cut(s) 227
MspI CCGG 4 cut(s) 32, 243, 261, 324
MspR9I CCNGG 5 cut(s) 33, 200, 243, 324, 325
MvaI CCWGG 1 cut(s) 200
MvnI CGCG 2 cut(s) 14, 227
MwoI GCNNNNNNNGC 4 cut(s) 175, 530, 857, 950
NciI CCSGG 4 cut(s) 33, 243, 324, 325
NdeII GATC 3 cut(s) 291, 581, 893
NlaIII CATG 1 cut(s) 196
NlaIV GGNNCC 2 cut(s) 293, 372
NmeAIII GCCGAG 2 cut(s) 125, 886
NmuCI GTSAC 1 cut(s) 184
NspV TTCGAA 1 cut(s) 875
PdmI GAANNNNTTC 1 cut(s) 281
PfeI GAWTC 5 cut(s) 773, 899, 916, 974, 982
PkrI GCNGC 6 cut(s) 57, 229, 314, 532, 725, 955
PleI GAGTC 3 cut(s) 36, 126, 763
PpsI GAGTC 3 cut(s) 36, 126, 763
Ppu21I YACGTR 1 cut(s) 113
PshAI GACNNNNGTC 1 cut(s) 152
PshBI ATTAAT 1 cut(s) 1008
Psp124BI GAGCTC 1 cut(s) 268
Psp6I CCWGG 1 cut(s) 198
PspEI GGTNACC 1 cut(s) 184
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 2 cut(s) 293, 372
PspPI GGNCC 1 cut(s) 196
PstI CTGCAG 1 cut(s) 314
PstNI CAGNNNCTG 1 cut(s) 902
PsuI RGATCY 2 cut(s) 291, 581
RsaI GTAC 1 cut(s) 593
RsaNI GTAC 1 cut(s) 592
SacI GAGCTC 1 cut(s) 268
SacII CCGCGG 1 cut(s) 228
SaqAI TTAA 2 cut(s) 569, 1008
SatI GCNGC 6 cut(s) 56, 228, 313, 531, 724, 954
Sau3AI GATC 3 cut(s) 291, 581, 893
Sau96I GGNCC 1 cut(s) 196
SchI GAGTC 3 cut(s) 37, 127, 764
ScrFI CCNGG 5 cut(s) 33, 200, 243, 324, 325
SduI GDGCHC 3 cut(s) 268, 629, 705
SfaNI GCATC 2 cut(s) 566, 795
SfcI CTRYAG 1 cut(s) 310
Sfr303I CCGCGG 1 cut(s) 228
SfuI TTCGAA 1 cut(s) 875
SgrBI CCGCGG 1 cut(s) 228
SmaI CCCGGG 1 cut(s) 325
Sse9I AATT 4 cut(s) 440, 503, 809, 1009
SsiI CCGC 8 cut(s) 12, 53, 56, 150, 214, 225, 227, 361
SspI AATATT 1 cut(s) 872
SspMI CTAG 2 cut(s) 537, 612
SstI GAGCTC 1 cut(s) 268
StyD4I CCNGG 5 cut(s) 31, 198, 241, 322, 323
StyI CCWWGG 1 cut(s) 519
TaaI ACNGT 1 cut(s) 282
TaiI ACGT 2 cut(s) 115, 176
TaqI TCGA 8 cut(s) 26, 156, 236, 411, 574, 776, 875, 966
TasI AATT 4 cut(s) 440, 503, 809, 1009
TauI GCSGC 2 cut(s) 58, 230
TfiI GAWTC 5 cut(s) 773, 899, 916, 974, 982
Tru1I TTAA 2 cut(s) 569, 1008
Tru9I TTAA 2 cut(s) 569, 1008
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 4 cut(s) 312, 530, 723, 953
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 5 cut(s) 17, 495, 810, 894, 974
TspGWI ACGGA 1 cut(s) 363
TspMI CCCGGG 1 cut(s) 323
VspI ATTAAT 1 cut(s) 1008
XapI RAATTY 1 cut(s) 503
XmaI CCCGGG 1 cut(s) 323
XmnI GAANNNNTTC 1 cut(s) 281
XspI CTAG 2 cut(s) 537, 612
ZraI GACGTC 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.