Rroxscaffold_6G00412370

Protamine P1 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0013294
Physical Location & Seq
Reverse (-)
34965678 .. 34967450
1773 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00412370.1

Sequence Viewer

Length: 1020 bp
ATGAAGCTACCCGCGAAGCCCATATCGAGTCCCGGTCGGAGCGACAAGTTCCCGCCGCCGTTGATGAGGTTTCTGAGGAGCAATGTCGGGAGCAAAAGCCGAGGTCGGTTACGTGCGAGTCCGATGTTCGTGAGGAAGAAGAACACGACCGCCGTCGAAACACAAGAGCCGTCGTCGCCGAAAGTGACCTGCATGGGCCAGGTTCGGGTCAGGCGGTCGTCCTCCGCGGCTTGTTCGCGACCCGGACGGGGAAGAAGTGCAGCAGCTCCGACCCGGAAACGGTTCGGGTGGATCCAAAACGCCGTGTTCTGCAGCGATTTTCCCGGTAAAATCAAGCCCAAGTCTTGCAGACACCTCTGGCGGAAATGGGTTCCGTTTCTTCAAGTTGGGTTTTGCACCAGAGTTCAAATCGAAAAAGACCCACCAAAAGTTGAGACCCAATTTGGGGAAGCAATTGATGGGTTTTGTTCAGATGATGATGAAGAAGAAGAACACGAAGAACCAGAATTTGAAAGAAAAGCCAAGGCTTTTGCTGCTTCTAGCTTTTCGCCACCCAAGAACGCTTTGCTCTTAACTCGATGCAGATCTGCGCCGTACAGGTCGTCTTCTTTGGCTAGTAGATTTTGGGGCTCACCAGACAGAGCTAAAGAAGAAACAGGGGAAGAAGAACAGAGCAAAACAGGGGAAGCAGAACAGAGCATCGAGCCCCAAAACAGAGAAAATGGCAGCGAAAATAAGAGACCCACATCGGAAAGAGAGTCCATTTCGGAACAAGAATCGAGAACCGAGCAACAAAATGAAGAAAAGATGGAATTTTTCAAGGGATTGGAAAACTCAATCAGAGAAAGAATGGCCGCCAAATCTGCGAGCATTGAAGATTCCAATGAAGGGGAGTTTGGATCAGATTCTGCTCGGCCTATGATTCTCACAAGGTGTAAGTCAGAACCAGCAAGAACAGCAGCAGAGAAGCTCGACCCAGATTCGTTGATTCATTCCCACCAAGTGTTTGTGATTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

339

Amino Acids

38.14

Weight (kDa)

9.06

Isoelectric Point (pI)

71.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37100 AT5G03110
fragaria_vesca FvH4_6g15510
malus_domestica MD04G1102600.v1.1 MD12G1122400.v1.1
prunus_persica Prupe.6G240400_v2.0.a1
pyrus_communis pycom12g12120
rosa_chinensis RchiOBHm_Chr3g0469011
rosa_laevigata RLG00000024390
rosa_multiflora Rmu_co8173580.1_g000001 Rmu_sc0037667.1_g000001
rosa_roxburghii Rroxscaffold_2G00112190 Rroxscaffold_6G00412370
rosa_rugosa Rorug03G0098400
rosa_samantha Rh3AG147900 Rh3BG170500 Rh3DG204500
rosa_wichuraiana Rw3G013930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 197
AccII CGCG 3 cut(s) 14, 227, 238
AciI CCGC 9 cut(s) 12, 53, 56, 150, 214, 225, 227, 361, 855
AclWI GGATC 3 cut(s) 286, 299, 907
AcoI YGGCCR 1 cut(s) 852
AcsI RAATTY 2 cut(s) 506, 812
AdeI CACNNNGTG 2 cut(s) 933, 1003
AfaI GTAC 1 cut(s) 596
AfiI CCNNNNNNNGG 6 cut(s) 205, 248, 279, 444, 445, 888
AgsI TTSAA 5 cut(s) 383, 407, 512, 820, 875
AjnI CCWGG 1 cut(s) 198
AjuI GAANNNNNNNTTGG 2 cut(s) 879, 911
AluBI AGCT 5 cut(s) 7, 266, 543, 644, 970
AluI AGCT 5 cut(s) 7, 266, 543, 644, 970
Alw26I GTCTC 2 cut(s) 428, 733
AlwI GGATC 3 cut(s) 286, 299, 907
AlwNI CAGNNNCTG 1 cut(s) 908
AoxI GGCC 3 cut(s) 196, 852, 914
ApeKI GCWGC 6 cut(s) 260, 263, 312, 533, 726, 959
ApoI RAATTY 2 cut(s) 506, 812
AseI ATTAAT 1 cut(s) 1014
Asp700I GAANNNNTTC 1 cut(s) 281
AspLEI GCGC 1 cut(s) 592
AspS9I GGNCC 1 cut(s) 196
AsuC2I CCSGG 4 cut(s) 33, 243, 274, 324
AsuHPI GGTGA 1 cut(s) 624
BamHI GGATCC 1 cut(s) 291
BanII GRGCYC 2 cut(s) 632, 708
BbsI GAAGAC 1 cut(s) 597
BbvI GCAGC 6 cut(s) 272, 275, 324, 520, 738, 971
BccI CCATC 2 cut(s) 452, 802
BceAI ACGGC 5 cut(s) 43, 137, 154, 287, 577
BciT130I CCWGG 1 cut(s) 200
BcnI CCSGG 4 cut(s) 33, 243, 274, 324
BcoDI GTCTC 2 cut(s) 428, 733
BfaI CTAG 2 cut(s) 540, 615
BfmI CTRYAG 1 cut(s) 310
BfuAI ACCTGC 1 cut(s) 197
BglII AGATCT 1 cut(s) 584
BisI GCNGC 9 cut(s) 56, 228, 261, 264, 313, 534, 727, 855, 960
BlsI GCNGC 9 cut(s) 57, 229, 262, 265, 314, 535, 728, 856, 961
Bme1390I CCNGG 5 cut(s) 33, 200, 243, 274, 324
BmgT120I GGNCC 1 cut(s) 196
BmiI GGNNCC 2 cut(s) 293, 372
BmrFI CCNGG 5 cut(s) 33, 200, 243, 274, 324
BmsI GCATC 2 cut(s) 569, 708
BoxI GACNNNNGTC 1 cut(s) 152
BpiI GAAGAC 1 cut(s) 597
BpuMI CCSGG 4 cut(s) 33, 243, 274, 324
BsaAI YACGTR 1 cut(s) 113
BsaBI GATNNNNATC 1 cut(s) 583
BsaI GGTCTC 2 cut(s) 428, 733
BsaJI CCNNGG 3 cut(s) 100, 225, 522
Bsc4I CCNNNNNNNGG 6 cut(s) 205, 248, 279, 444, 445, 888
Bse3DI GCAATG 1 cut(s) 88
Bse8I GATNNNNATC 1 cut(s) 583
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 3 cut(s) 100, 225, 522
BseJI GATNNNNATC 1 cut(s) 583
BseLI CCNNNNNNNGG 6 cut(s) 205, 248, 279, 444, 445, 888
BseMI GCAATG 1 cut(s) 88
BseMII CTCAG 1 cut(s) 65
BseRI GAGGAG 1 cut(s) 91
BseXI GCAGC 6 cut(s) 272, 275, 324, 520, 738, 971
BsgI GTGCAG 1 cut(s) 279
Bsh1236I CGCG 3 cut(s) 14, 227, 238
Bsh1285I CGRYCG 3 cut(s) 37, 150, 218
BshFI GGCC 3 cut(s) 198, 854, 916
BsiEI CGRYCG 3 cut(s) 37, 150, 218
BsiSI CCGG 4 cut(s) 33, 243, 274, 324
BslFI GGGAC 1 cut(s) 15
BslI CCNNNNNNNGG 6 cut(s) 205, 248, 279, 444, 445, 888
BsmAI GTCTC 2 cut(s) 428, 733
BsmFI GGGAC 1 cut(s) 15
BsnI GGCC 3 cut(s) 198, 854, 916
Bso31I GGTCTC 2 cut(s) 428, 733
Bsp1286I GDGCHC 2 cut(s) 632, 708
Bsp143I GATC 3 cut(s) 291, 584, 899
Bsp68I TCGCGA 1 cut(s) 238
BspACI CCGC 9 cut(s) 12, 53, 56, 150, 214, 225, 227, 361, 855
BspANI GGCC 3 cut(s) 198, 854, 916
BspCNI CTCAG 1 cut(s) 66
BspFNI CGCG 3 cut(s) 14, 227, 238
BspLI GGNNCC 2 cut(s) 293, 372
BspMAI CTGCAG 1 cut(s) 314
BspMI ACCTGC 1 cut(s) 197
BspPI GGATC 3 cut(s) 286, 299, 907
BspTNI GGTCTC 2 cut(s) 428, 733
BsrDI GCAATG 1 cut(s) 88
BssECI CCNNGG 3 cut(s) 100, 225, 522
BssMI GATC 3 cut(s) 291, 584, 899
BssT1I CCWWGG 1 cut(s) 522
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 282
BstBAI YACGTR 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 868
BstDEI CTNAG 1 cut(s) 74
BstDSI CCRYGG 1 cut(s) 225
BstFNI CGCG 3 cut(s) 14, 227, 238
BstHHI GCGC 1 cut(s) 592
BstKTI GATC 3 cut(s) 294, 587, 902
BstMAI GTCTC 2 cut(s) 428, 733
BstMBI GATC 3 cut(s) 291, 584, 899
BstMCI CGRYCG 3 cut(s) 37, 150, 218
BstMWI GCNNNNNNNGC 4 cut(s) 175, 533, 863, 956
BstNI CCWGG 1 cut(s) 200
BstPAI GACNNNNGTC 1 cut(s) 152
BstSCI CCNGG 5 cut(s) 31, 198, 241, 272, 322
BstSFI CTRYAG 1 cut(s) 310
BstUI CGCG 3 cut(s) 14, 227, 238
BstV1I GCAGC 6 cut(s) 272, 275, 324, 520, 738, 971
BstV2I GAAGAC 1 cut(s) 597
BstX2I RGATCY 2 cut(s) 291, 584
BstYI RGATCY 2 cut(s) 291, 584
BsuRI GGCC 3 cut(s) 198, 854, 916
BtgI CCRYGG 1 cut(s) 225
BtuMI TCGCGA 1 cut(s) 238
BveI ACCTGC 1 cut(s) 197
Cac8I GCNNGC 1 cut(s) 868
CaiI CAGNNNCTG 1 cut(s) 908
CfoI GCGC 1 cut(s) 592
Cfr13I GGNCC 1 cut(s) 196
Cfr42I CCGCGG 1 cut(s) 228
Csp6I GTAC 1 cut(s) 595
CviAII CATG 1 cut(s) 193
CviQI GTAC 1 cut(s) 595
DdeI CTNAG 1 cut(s) 74
DpnI GATC 3 cut(s) 293, 586, 901
DpnII GATC 3 cut(s) 291, 584, 899
DraIII CACNNNGTG 2 cut(s) 933, 1003
EaeI YGGCCR 1 cut(s) 852
EciI GGCGGA 1 cut(s) 376
Eco130I CCWWGG 1 cut(s) 522
Eco24I GRGCYC 2 cut(s) 632, 708
Eco31I GGTCTC 2 cut(s) 428, 733
EcoRII CCWGG 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 522
EcoT38I GRGCYC 2 cut(s) 632, 708
ErhI CCWWGG 1 cut(s) 522
FaeI CATG 1 cut(s) 196
FaiI YATR 3 cut(s) 23, 194, 920
FaqI GGGAC 1 cut(s) 15
FatI CATG 1 cut(s) 192
FauI CCCGC 2 cut(s) 19, 60
Fnu4HI GCNGC 9 cut(s) 56, 228, 261, 264, 313, 534, 727, 855, 960
FriOI GRGCYC 2 cut(s) 632, 708
Fsp4HI GCNGC 9 cut(s) 56, 228, 261, 264, 313, 534, 727, 855, 960
FspBI CTAG 2 cut(s) 540, 615
GlaI GCGC 1 cut(s) 591
GluI GCNGC 9 cut(s) 56, 228, 261, 264, 313, 534, 727, 855, 960
HaeIII GGCC 3 cut(s) 198, 854, 916
HapII CCGG 4 cut(s) 33, 243, 274, 324
HhaI GCGC 1 cut(s) 592
Hin1II CATG 1 cut(s) 196
Hin6I GCGC 1 cut(s) 590
HinP1I GCGC 1 cut(s) 590
HinfI GANTC 9 cut(s) 28, 118, 758, 776, 878, 905, 922, 980, 988
HpaII CCGG 4 cut(s) 33, 243, 274, 324
HphI GGTGA 1 cut(s) 624
Hpy188III TCNNGA 4 cut(s) 88, 130, 237, 780
Hpy99I CGWCG 3 cut(s) 158, 175, 178
HpyAV CCTTC 1 cut(s) 881
HpyCH4III ACNGT 1 cut(s) 282
HpyCH4IV ACGT 1 cut(s) 112
HpyCH4V TGCA 6 cut(s) 192, 260, 312, 348, 396, 582
HpyF10VI GCNNNNNNNGC 4 cut(s) 175, 533, 863, 956
HpyF3I CTNAG 1 cut(s) 74
HpySE526I ACGT 1 cut(s) 112
Hsp92II CATG 1 cut(s) 196
HspAI GCGC 1 cut(s) 590
KspI CCGCGG 1 cut(s) 228
Kzo9I GATC 3 cut(s) 291, 584, 899
LmnI GCTCC 4 cut(s) 39, 78, 90, 271
Lsp1109I GCAGC 6 cut(s) 272, 275, 324, 520, 738, 971
LweI GCATC 2 cut(s) 569, 708
MaeI CTAG 2 cut(s) 540, 615
MaeII ACGT 1 cut(s) 112
MaeIII GTNAC 2 cut(s) 108, 184
MalI GATC 3 cut(s) 293, 586, 901
MboI GATC 3 cut(s) 291, 584, 899
MfeI CAATTG 1 cut(s) 453
MflI RGATCY 2 cut(s) 291, 584
MhlI GDGCHC 2 cut(s) 632, 708
MluCI AATT 5 cut(s) 440, 453, 506, 812, 1015
MlyI GAGTC 3 cut(s) 37, 127, 767
MmeI TCCRAC 2 cut(s) 17, 293
MnlI CCTC 6 cut(s) 60, 69, 95, 126, 232, 365
MroXI GAANNNNTTC 1 cut(s) 281
MseI TTAA 2 cut(s) 572, 1014
MspA1I CMGCKG 1 cut(s) 227
MspI CCGG 4 cut(s) 33, 243, 274, 324
MspR9I CCNGG 5 cut(s) 33, 200, 243, 274, 324
MunI CAATTG 1 cut(s) 453
MvaI CCWGG 1 cut(s) 200
MvnI CGCG 3 cut(s) 14, 227, 238
MwoI GCNNNNNNNGC 4 cut(s) 175, 533, 863, 956
NciI CCSGG 4 cut(s) 33, 243, 274, 324
NdeII GATC 3 cut(s) 291, 584, 899
NlaIII CATG 1 cut(s) 196
NlaIV GGNNCC 2 cut(s) 293, 372
NmeAIII GCCGAG 2 cut(s) 125, 892
NmuCI GTSAC 1 cut(s) 184
NruI TCGCGA 1 cut(s) 238
PdmI GAANNNNTTC 1 cut(s) 281
PfeI GAWTC 6 cut(s) 776, 878, 905, 922, 980, 988
PkrI GCNGC 9 cut(s) 57, 229, 262, 265, 314, 535, 728, 856, 961
PleI GAGTC 3 cut(s) 36, 126, 766
PpsI GAGTC 3 cut(s) 36, 126, 766
Ppu21I YACGTR 1 cut(s) 113
PshAI GACNNNNGTC 1 cut(s) 152
PshBI ATTAAT 1 cut(s) 1014
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 2 cut(s) 293, 372
PspPI GGNCC 1 cut(s) 196
PstI CTGCAG 1 cut(s) 314
PstNI CAGNNNCTG 1 cut(s) 908
PsuI RGATCY 2 cut(s) 291, 584
RruI TCGCGA 1 cut(s) 238
RsaI GTAC 1 cut(s) 596
RsaNI GTAC 1 cut(s) 595
SacII CCGCGG 1 cut(s) 228
SaqAI TTAA 2 cut(s) 572, 1014
SatI GCNGC 9 cut(s) 56, 228, 261, 264, 313, 534, 727, 855, 960
Sau3AI GATC 3 cut(s) 291, 584, 899
Sau96I GGNCC 1 cut(s) 196
SchI GAGTC 3 cut(s) 37, 127, 767
ScrFI CCNGG 5 cut(s) 33, 200, 243, 274, 324
SduI GDGCHC 2 cut(s) 632, 708
SfaNI GCATC 2 cut(s) 569, 708
SfcI CTRYAG 1 cut(s) 310
Sfr303I CCGCGG 1 cut(s) 228
SgrBI CCGCGG 1 cut(s) 228
Sse9I AATT 5 cut(s) 440, 453, 506, 812, 1015
SsiI CCGC 9 cut(s) 12, 53, 56, 150, 214, 225, 227, 361, 855
SspMI CTAG 2 cut(s) 540, 615
StyD4I CCNGG 5 cut(s) 31, 198, 241, 272, 322
StyI CCWWGG 1 cut(s) 522
TaaI ACNGT 1 cut(s) 282
TaiI ACGT 1 cut(s) 115
TaqI TCGA 7 cut(s) 26, 156, 411, 577, 702, 779, 972
TasI AATT 5 cut(s) 440, 453, 506, 812, 1015
TauI GCSGC 3 cut(s) 58, 230, 857
TfiI GAWTC 6 cut(s) 776, 878, 905, 922, 980, 988
Tru1I TTAA 2 cut(s) 572, 1014
Tru9I TTAA 2 cut(s) 572, 1014
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 6 cut(s) 260, 263, 312, 533, 726, 959
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 5 cut(s) 17, 495, 813, 900, 980
TspGWI ACGGA 1 cut(s) 363
VspI ATTAAT 1 cut(s) 1014
XapI RAATTY 2 cut(s) 506, 812
XmnI GAANNNNTTC 1 cut(s) 281
XspI CTAG 2 cut(s) 540, 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.