Rh3BG170500

Protamine P1 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0013294
Physical Location & Seq
Forward (+)
14624677 .. 14626824
2148 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG170500.1

Sequence Viewer

Length: 303 bp
ATGGCCAAATCTGCGAGCATTGAATATTCGAATGAAGTGGAGTTTGGATCAGATTCTGCTCGGCCTATGATTCTCACAAGGTGTAAGTCAGAACCAGCAAGAACAGCAGCAGAGAAGCTCGACCCAGATTCGTTGATTCATTCCCACCGATTGTTTTCGGTCACTGGAGCTTGGTGGTGGCTCTCCTTCCAATGTCTAGGTCCTAGACATGGTGCTGCTTGGTTGGAGTTACTGATTCCGACTGGTGATGGTTTGGACTTGTGCACGCTGCACATGTGTGATGGTGGTACAAAACGTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.08

Weight (kDa)

6.39

Isoelectric Point (pI)

35.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37100 AT5G03110
fragaria_vesca FvH4_6g15510
malus_domestica MD04G1102600.v1.1 MD12G1122400.v1.1
prunus_persica Prupe.6G240400_v2.0.a1
pyrus_communis pycom12g12120
rosa_chinensis RchiOBHm_Chr3g0469011
rosa_laevigata RLG00000024390
rosa_multiflora Rmu_co8173580.1_g000001 Rmu_sc0037667.1_g000001
rosa_roxburghii Rroxscaffold_2G00112190 Rroxscaffold_6G00412370
rosa_rugosa Rorug03G0098400
rosa_samantha Rh3AG147900 Rh3BG170500 Rh3DG204500
rosa_wichuraiana Rw3G013930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 55
AcoI YGGCCR 1 cut(s) 3
AdeI CACNNNGTG 1 cut(s) 81
AfaI GTAC 1 cut(s) 289
AfiI CCNNNNNNNGG 1 cut(s) 209
AflIII ACRYGT 1 cut(s) 273
AgsI TTSAA 1 cut(s) 23
AjuI GAANNNNNNNTTGG 2 cut(s) 27, 59
AleI CACNNNNGTG 1 cut(s) 276
AluBI AGCT 2 cut(s) 118, 170
AluI AGCT 2 cut(s) 118, 170
Alw21I GWGCWC 1 cut(s) 266
Alw44I GTGCAC 1 cut(s) 262
AlwI GGATC 1 cut(s) 55
AlwNI CAGNNNCTG 1 cut(s) 56
AoxI GGCC 2 cut(s) 3, 62
ApaLI GTGCAC 1 cut(s) 262
ApeKI GCWGC 3 cut(s) 107, 215, 268
AspS9I GGNCC 1 cut(s) 200
AsuHPI GGTGA 1 cut(s) 257
AsuII TTCGAA 1 cut(s) 29
AvaII GGWCC 1 cut(s) 200
BaeGI GKGCMC 1 cut(s) 266
BalI TGGCCA 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 266
BbvI GCAGC 3 cut(s) 119, 202, 255
BccI CCATC 2 cut(s) 242, 275
BfaI CTAG 2 cut(s) 197, 204
BisI GCNGC 3 cut(s) 108, 216, 269
BlsI GCNGC 3 cut(s) 109, 217, 270
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 200
BpmI CTGGAG 1 cut(s) 186
Bpu14I TTCGAA 1 cut(s) 29
Bsc4I CCNNNNNNNGG 1 cut(s) 209
Bse1I ACTGG 2 cut(s) 169, 247
BseLI CCNNNNNNNGG 1 cut(s) 209
BseNI ACTGG 2 cut(s) 169, 247
BseSI GKGCMC 1 cut(s) 266
BseXI GCAGC 3 cut(s) 119, 202, 255
BsgI GTGCAG 1 cut(s) 254
BshFI GGCC 2 cut(s) 5, 64
BsiHKAI GWGCWC 1 cut(s) 266
BslI CCNNNNNNNGG 1 cut(s) 209
BsnI GGCC 2 cut(s) 5, 64
Bsp119I TTCGAA 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 266
Bsp143I GATC 1 cut(s) 47
BspANI GGCC 2 cut(s) 5, 64
BspPI GGATC 1 cut(s) 55
BspT104I TTCGAA 1 cut(s) 29
BsrI ACTGG 2 cut(s) 169, 247
BssMI GATC 1 cut(s) 47
BstBI TTCGAA 1 cut(s) 29
BstC8I GCNNGC 2 cut(s) 16, 266
BstKTI GATC 1 cut(s) 50
BstMBI GATC 1 cut(s) 47
BstMWI GCNNNNNNNGC 2 cut(s) 11, 104
BstNSI RCATGY 1 cut(s) 277
BstSLI GKGCMC 1 cut(s) 266
BstV1I GCAGC 3 cut(s) 119, 202, 255
BsuRI GGCC 2 cut(s) 5, 64
BtsIMutI CAGTG 1 cut(s) 162
Cac8I GCNNGC 2 cut(s) 16, 266
CaiI CAGNNNCTG 1 cut(s) 56
Cfr13I GGNCC 1 cut(s) 200
Csp6I GTAC 1 cut(s) 288
CviAII CATG 2 cut(s) 209, 274
CviJI RGCY 5 cut(s) 5, 64, 118, 170, 181
CviKI_1 RGCY 5 cut(s) 5, 64, 118, 170, 181
CviQI GTAC 1 cut(s) 288
DpnI GATC 1 cut(s) 49
DpnII GATC 1 cut(s) 47
DraIII CACNNNGTG 1 cut(s) 81
EaeI YGGCCR 1 cut(s) 3
Eco47I GGWCC 1 cut(s) 200
EcoO109I RGGNCCY 1 cut(s) 200
FaeI CATG 2 cut(s) 212, 277
FaiI YATR 3 cut(s) 68, 210, 275
FatI CATG 2 cut(s) 208, 273
Fnu4HI GCNGC 3 cut(s) 108, 216, 269
Fsp4HI GCNGC 3 cut(s) 108, 216, 269
FspBI CTAG 2 cut(s) 197, 204
GluI GCNGC 3 cut(s) 108, 216, 269
GsuI CTGGAG 1 cut(s) 186
HaeIII GGCC 2 cut(s) 5, 64
Hin1II CATG 2 cut(s) 212, 277
HinfI GANTC 5 cut(s) 53, 70, 128, 136, 235
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 1 cut(s) 264
Hpy188I TCNGA 3 cut(s) 52, 91, 240
Hpy8I GTNNAC 1 cut(s) 264
HpyAV CCTTC 1 cut(s) 196
HpyCH4IV ACGT 1 cut(s) 295
HpyCH4V TGCA 2 cut(s) 264, 271
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 104
HpySE526I ACGT 1 cut(s) 295
Hsp92II CATG 2 cut(s) 212, 277
Kzo9I GATC 1 cut(s) 47
LmnI GCTCC 1 cut(s) 167
LpnPI CCDG 4 cut(s) 108, 138, 150, 228
Lsp1109I GCAGC 3 cut(s) 119, 202, 255
MaeI CTAG 2 cut(s) 197, 204
MaeII ACGT 1 cut(s) 295
MaeIII GTNAC 2 cut(s) 160, 228
MalI GATC 1 cut(s) 49
MboI GATC 1 cut(s) 47
MhlI GDGCHC 1 cut(s) 266
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 2 cut(s) 204, 263
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 276
Msp20I TGGCCA 1 cut(s) 5
MwoI GCNNNNNNNGC 2 cut(s) 11, 104
NdeII GATC 1 cut(s) 47
NlaIII CATG 2 cut(s) 212, 277
NmeAIII GCCGAG 1 cut(s) 40
NmuCI GTSAC 1 cut(s) 160
NspI RCATGY 1 cut(s) 277
NspV TTCGAA 1 cut(s) 29
OliI CACNNNNGTG 1 cut(s) 276
PciI ACATGT 1 cut(s) 273
PfeI GAWTC 5 cut(s) 53, 70, 128, 136, 235
PkrI GCNGC 3 cut(s) 109, 217, 270
PpuMI RGGWCCY 1 cut(s) 200
PscI ACATGT 1 cut(s) 273
Psp5II RGGWCCY 1 cut(s) 200
PspPI GGNCC 1 cut(s) 200
PspPPI RGGWCCY 1 cut(s) 200
PstNI CAGNNNCTG 1 cut(s) 56
RsaI GTAC 1 cut(s) 289
RsaNI GTAC 1 cut(s) 288
RseI CAYNNNNRTG 1 cut(s) 276
SatI GCNGC 3 cut(s) 108, 216, 269
Sau3AI GATC 1 cut(s) 47
Sau96I GGNCC 1 cut(s) 200
SduI GDGCHC 1 cut(s) 266
SetI ASST 5 cut(s) 83, 120, 172, 202, 298
SfuI TTCGAA 1 cut(s) 29
SinI GGWCC 1 cut(s) 200
SmiMI CAYNNNNRTG 1 cut(s) 276
SspI AATATT 1 cut(s) 26
SspMI CTAG 2 cut(s) 197, 204
TaiI ACGT 1 cut(s) 298
TaqI TCGA 2 cut(s) 29, 120
TaqII GACCGA 1 cut(s) 148
TfiI GAWTC 5 cut(s) 53, 70, 128, 136, 235
TscAI CASTG 1 cut(s) 169
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 3 cut(s) 107, 215, 268
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 2 cut(s) 48, 128
TspRI CASTG 1 cut(s) 169
VneI GTGCAC 1 cut(s) 262
VpaK11BI GGWCC 1 cut(s) 200
XceI RCATGY 1 cut(s) 277
XspI CTAG 2 cut(s) 197, 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.