Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003978

Physical Location & Seq

Genomic Coordinates Reverse (-)

15613368 .. 15615022

Gene Structure 1655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G37170.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCCAAAGACGTGGAAGGACCTGAGGGATTTCAGACAAGAGACTACGAAGATCCGCCACCAACTCCGTTTTTCGATGCGGACGAGCTTACCAAGTGGTCTTTATACAGAGCCGTCATTGCCGAGTTCGTAGCCACTCTCCTCTTCTTGTACATCACCGTTTTAACTGTCATCGGTTACAAGATTCAGTCCGACACAAAAGCCGGTGGAGTTGACTGCGGCGGCGTCGGAATCCTTGGCATCGCGTGGGCTTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACCGCCGGTATCTCAGGTGGTCACATAAACCCTGCGGTGACGTTTGGTTTGTTCTTAGCCCGGAAGGTATCGCTGATTAGGGCGGTGCTTTACATGGTGGCTCAGTGTTTGGGTGCTATTTGTGGAGTTGGTTTCGTCAAAGCCTTTCAAAGCTCTTACTATGATCGTTACGGTGGAGGAGCCAACTCTCTAGCAGACGGCTACAACACAGGCACCGGACTAGCCGCAGAGATCATTGGAACATTCGTTCTCGTCTACACAGTCTTCTCCGCTACTGATCCCAAACGTAACGCTAGAGACTCCCACGTTCCGGTTTTGGCGCCACTTCCGATTGGGTTTGCGGTGTTTATGGTACATTTGGCCACTATTCCGATCACCGGAACCGGCATCAACCCGGCTAGGAGTTTCGGAGCTGCCGTAATCTATAACAAGAGCAAGCCATGGGATGACCACTGGATATTCTGGGTGGGACCATTCATTGGAGCTGCGATAGCTGCATTTTATCACCAATTTGTCCTAAGGGCTTCAGGTTCCAAGTCACTTGGATCCTTCAGAAGTGCAGCCAACGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005215 GO:0005372 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006833 GO:0006855 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0015250 GO:0015267 GO:0015318 GO:0015893 GO:0016020 GO:0016021 GO:0019899 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0031625 GO:0033993 GO:0034220 GO:0042044 GO:0042221 GO:0042493 GO:0042891 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044389 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:0080170 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

285

Amino Acids

30.45

Weight (kDa)

7.67

Isoelectric Point (pI)

29.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	72 - 307	1.5e-86	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37170 AT2G37170 AT2G37180 AT3G53420 AT3G53420 AT5G60660
fragaria_vesca	FvH4_6g15820 FvH4_6g15820 FvH4_6g15840 FvH4_6g15840 FvH4_6g15840
malus_domestica	MD04G1098300.v1.1 MD12G1119100.v1.1 MD12G1119200.v1.1
prunus_persica	Prupe.6G237000_v2.0.a1
pyrus_communis	pycom12g11780
rosa_chinensis	RchiOBHm_Chr3g0469531 RchiOBHm_Chr3g0469541
rosa_laevigata	RLG00000024341 RLG00000024342
rosa_multiflora	Rmu_sc0006483.1_g000001 Rmu_sc0009709.1_g000011
rosa_roxburghii	Rroxscaffold_6G00411780 Rroxscaffold_6G00411790
rosa_rugosa	Rorug03G0102300 Rorug03G0102400
rosa_samantha	Rh3AG151800 Rh3BG175300 Rh3BG175500 Rh3CG166600 Rh3DG200200
rosa_wichuraiana	Rw3G014300 Rw3G014320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	497, 604
AccB7I	CCANNNNNTGG	1 cut(s)	764
AccI	GTMKAC	2 cut(s)	279, 540
AccII	CGCG	1 cut(s)	245
AclI	AACGTT	1 cut(s)	852
AclWI	GGATC	4 cut(s)	47, 557, 825, 838
AcoI	YGGCCR	2 cut(s)	3, 645
AcuI	CTGAAG	2 cut(s)	795, 820
AcyI	GRCGYC	2 cut(s)	225, 605
AfaI	GTAC	2 cut(s)	152, 639
AfiI	CCNNNNNNNGG	3 cut(s)	595, 662, 764
AgsI	TTSAA	1 cut(s)	434
AjiI	CACGTC	1 cut(s)	13
AloI	GAACNNNNNNTCC	2 cut(s)	516, 548
AluBI	AGCT	5 cut(s)	88, 438, 698, 770, 779
AluI	AGCT	5 cut(s)	88, 438, 698, 770, 779
Alw26I	GTCTC	2 cut(s)	36, 576
AlwI	GGATC	4 cut(s)	47, 557, 825, 838
AoxI	GGCC	2 cut(s)	3, 645
ApeKI	GCWGC	4 cut(s)	698, 770, 779, 845
ArsI	GACNNNNNNTTYG	2 cut(s)	316, 348
AspLEI	GCGC	1 cut(s)	607
AspS9I	GGNCC	2 cut(s)	20, 755
AsuC2I	CCSGG	2 cut(s)	346, 680
AsuHPI	GGTGA	4 cut(s)	148, 334, 652, 782
AvaII	GGWCC	2 cut(s)	20, 755
AxyI	CCTNAGG	2 cut(s)	24, 803
BalI	TGGCCA	2 cut(s)	5, 647
BamHI	GGATCC	1 cut(s)	830
BanI	GGYRCC	2 cut(s)	497, 604
BbsI	GAAGAC	1 cut(s)	541
BbvI	GCAGC	3 cut(s)	685, 757, 766
BceAI	ACGGC	3 cut(s)	98, 499, 686
BcnI	CCSGG	2 cut(s)	346, 680
BcoDI	GTCTC	2 cut(s)	36, 576
BfaI	CTAG	4 cut(s)	476, 506, 579, 684
BfoI	RGCGCY	1 cut(s)	608
BisI	GCNGC	7 cut(s)	220, 223, 510, 699, 771, 780, 846
BlsI	GCNGC	7 cut(s)	221, 224, 511, 700, 772, 781, 847
Bme1390I	CCNGG	2 cut(s)	346, 680
Bme18I	GGWCC	2 cut(s)	20, 755
BmgBI	CACGTC	1 cut(s)	13
BmgT120I	GGNCC	2 cut(s)	20, 755
BmiI	GGNNCC	7 cut(s)	466, 499, 606, 667, 756, 817, 832
BmrFI	CCNGG	2 cut(s)	346, 680
BmsI	GCATC	3 cut(s)	67, 249, 681
BpiI	GAAGAC	1 cut(s)	541
BpuMI	CCSGG	2 cut(s)	346, 680
BsaBI	GATNNNNATC	1 cut(s)	269
BsaHI	GRCGYC	2 cut(s)	225, 605
BsaJI	CCNNGG	2 cut(s)	235, 725
BsaWI	WCCGGW	3 cut(s)	500, 595, 662
BsaXI	ACNNNNNCTCC	2 cut(s)	687, 717
Bsc4I	CCNNNNNNNGG	3 cut(s)	595, 662, 764
Bse118I	RCCGGY	3 cut(s)	203, 290, 668
Bse1I	ACTGG	1 cut(s)	743
Bse21I	CCTNAGG	2 cut(s)	24, 803
Bse3DI	GCAATG	1 cut(s)	117
Bse8I	GATNNNNATC	1 cut(s)	269
BseDI	CCNNGG	2 cut(s)	235, 725
BseGI	GGATG	2 cut(s)	270, 736
BseJI	GATNNNNATC	1 cut(s)	269
BseLI	CCNNNNNNNGG	3 cut(s)	595, 662, 764
BseMI	GCAATG	1 cut(s)	117
BseMII	CTCAG	3 cut(s)	15, 312, 401
BseNI	ACTGG	1 cut(s)	743
BseRI	GAGGAG	2 cut(s)	131, 477
BseXI	GCAGC	3 cut(s)	685, 757, 766
BsgI	GTGCAG	1 cut(s)	268
Bsh1236I	CGCG	1 cut(s)	245
BshFI	GGCC	2 cut(s)	5, 647
BshNI	GGYRCC	2 cut(s)	497, 604
BsiSI	CCGG	8 cut(s)	204, 291, 346, 501, 596, 663, 669, 680
BslFI	GGGAC	1 cut(s)	768
BslI	CCNNNNNNNGG	3 cut(s)	595, 662, 764
BsmAI	GTCTC	2 cut(s)	36, 576
BsmFI	GGGAC	1 cut(s)	768
BsnI	GGCC	2 cut(s)	5, 647
Bsp1407I	TGTACA	1 cut(s)	150
Bsp143I	GATC	7 cut(s)	52, 264, 448, 516, 562, 657, 830
Bsp19I	CCATGG	1 cut(s)	725
BspANI	GGCC	2 cut(s)	5, 647
BspCNI	CTCAG	3 cut(s)	16, 311, 400
BspFNI	CGCG	1 cut(s)	245
BspLI	GGNNCC	7 cut(s)	466, 499, 606, 667, 756, 817, 832
BspPI	GGATC	4 cut(s)	47, 557, 825, 838
BspT107I	GGYRCC	2 cut(s)	497, 604
BsrDI	GCAATG	1 cut(s)	117
BsrFI	RCCGGY	3 cut(s)	203, 290, 668
BsrGI	TGTACA	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	743
BssAI	RCCGGY	3 cut(s)	203, 290, 668
BssECI	CCNNGG	2 cut(s)	235, 725
BssMI	GATC	7 cut(s)	52, 264, 448, 516, 562, 657, 830
BssNI	GRCGYC	2 cut(s)	225, 605
BssT1I	CCWWGG	2 cut(s)	235, 725
Bst4CI	ACNGT	4 cut(s)	160, 169, 458, 547
Bst6I	CTCTTC	1 cut(s)	149
BstACI	GRCGYC	2 cut(s)	225, 605
BstAUI	TGTACA	1 cut(s)	150
BstC8I	GCNNGC	1 cut(s)	722
BstDEI	CTNAG	5 cut(s)	24, 298, 340, 387, 803
BstDSI	CCRYGG	1 cut(s)	725
BstF5I	GGATG	2 cut(s)	270, 736
BstFNI	CGCG	1 cut(s)	245
BstH2I	RGCGCY	1 cut(s)	608
BstHHI	GCGC	1 cut(s)	607
BstKTI	GATC	7 cut(s)	55, 267, 451, 519, 565, 660, 833
BstMAI	GTCTC	2 cut(s)	36, 576
BstMBI	GATC	7 cut(s)	52, 264, 448, 516, 562, 657, 830
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 776, 779
BstSCI	CCNGG	2 cut(s)	344, 678
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	3 cut(s)	685, 757, 766
BstV2I	GAAGAC	1 cut(s)	541
BstX2I	RGATCY	2 cut(s)	52, 830
BstXI	CCANNNNNNTGG	1 cut(s)	13
BstYI	RGATCY	2 cut(s)	52, 830
Bsu36I	CCTNAGG	2 cut(s)	24, 803
BsuRI	GGCC	2 cut(s)	5, 647
BtgI	CCRYGG	1 cut(s)	725
BtgZI	GCGATG	1 cut(s)	226
BtrI	CACGTC	1 cut(s)	13
BtsCI	GGATG	2 cut(s)	270, 736
BtsIMutI	CAGTG	2 cut(s)	395, 736
Cac8I	GCNNGC	1 cut(s)	722
CfoI	GCGC	1 cut(s)	607
Cfr10I	RCCGGY	3 cut(s)	203, 290, 668
Cfr13I	GGNCC	2 cut(s)	20, 755
CseI	GACGC	1 cut(s)	214
Csp6I	GTAC	2 cut(s)	151, 638
CviAII	CATG	3 cut(s)	262, 379, 726
CviQI	GTAC	2 cut(s)	151, 638
DdeI	CTNAG	5 cut(s)	24, 298, 340, 387, 803
DinI	GGCGCC	1 cut(s)	606
DpnI	GATC	7 cut(s)	54, 266, 450, 518, 564, 659, 832
DpnII	GATC	7 cut(s)	52, 264, 448, 516, 562, 657, 830
EaeI	YGGCCR	2 cut(s)	3, 645
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
EciI	GGCGGA	1 cut(s)	45
Eco130I	CCWWGG	2 cut(s)	235, 725
Eco47I	GGWCC	2 cut(s)	20, 755
Eco57I	CTGAAG	2 cut(s)	795, 820
Eco81I	CCTNAGG	2 cut(s)	24, 803
EcoO109I	RGGNCCY	1 cut(s)	20
EcoT14I	CCWWGG	2 cut(s)	235, 725
EgeI	GGCGCC	1 cut(s)	606
EheI	GGCGCC	1 cut(s)	606
ErhI	CCWWGG	2 cut(s)	235, 725
FaeI	CATG	3 cut(s)	265, 382, 729
FaiI	YATR	8 cut(s)	106, 263, 311, 380, 447, 635, 711, 727
FaqI	GGGAC	1 cut(s)	768
FatI	CATG	3 cut(s)	261, 378, 725
FblI	GTMKAC	2 cut(s)	279, 540
Fnu4HI	GCNGC	7 cut(s)	220, 223, 510, 699, 771, 780, 846
FokI	GGATG	2 cut(s)	257, 743
Fsp4HI	GCNGC	7 cut(s)	220, 223, 510, 699, 771, 780, 846
FspBI	CTAG	4 cut(s)	476, 506, 579, 684
GlaI	GCGC	1 cut(s)	606
GluI	GCNGC	7 cut(s)	220, 223, 510, 699, 771, 780, 846
HaeII	RGCGCY	1 cut(s)	608
HaeIII	GGCC	2 cut(s)	5, 647
HapII	CCGG	8 cut(s)	204, 291, 346, 501, 596, 663, 669, 680
HgaI	GACGC	1 cut(s)	214
HhaI	GCGC	1 cut(s)	607
Hin1I	GRCGYC	2 cut(s)	225, 605
Hin1II	CATG	3 cut(s)	265, 382, 729
Hin6I	GCGC	1 cut(s)	605
HinP1I	GCGC	1 cut(s)	605
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	3 cut(s)	184, 231, 584
HpaII	CCGG	8 cut(s)	204, 291, 346, 501, 596, 663, 669, 680
HphI	GGTGA	4 cut(s)	148, 334, 652, 782
Hpy166II	GTNNAC	3 cut(s)	214, 280, 541
Hpy188I	TCNGA	7 cut(s)	36, 193, 230, 615, 657, 695, 839
Hpy8I	GTNNAC	3 cut(s)	214, 280, 541
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	3 cut(s)	11, 343, 844
HpyCH4III	ACNGT	4 cut(s)	160, 169, 458, 547
HpyCH4IV	ACGT	5 cut(s)	12, 326, 571, 591, 852
HpyCH4V	TGCA	3 cut(s)	285, 782, 845
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 776, 779
HpyF3I	CTNAG	5 cut(s)	24, 298, 340, 387, 803
HpySE526I	ACGT	5 cut(s)	12, 326, 571, 591, 852
Hsp92I	GRCGYC	2 cut(s)	225, 605
Hsp92II	CATG	3 cut(s)	265, 382, 729
HspAI	GCGC	1 cut(s)	605
KasI	GGCGCC	1 cut(s)	604
Kzo9I	GATC	7 cut(s)	52, 264, 448, 516, 562, 657, 830
LmnI	GCTCC	3 cut(s)	464, 695, 767
Lsp1109I	GCAGC	3 cut(s)	685, 757, 766
LweI	GCATC	3 cut(s)	67, 249, 681
MaeI	CTAG	4 cut(s)	476, 506, 579, 684
MaeII	ACGT	5 cut(s)	12, 326, 571, 591, 852
MaeIII	GTNAC	6 cut(s)	176, 305, 322, 452, 572, 822
MalI	GATC	7 cut(s)	54, 266, 450, 518, 564, 659, 832
MboI	GATC	7 cut(s)	52, 264, 448, 516, 562, 657, 830
MboII	GAAGA	4 cut(s)	62, 136, 259, 541
MflI	RGATCY	2 cut(s)	52, 830
MlsI	TGGCCA	2 cut(s)	5, 647
MluCI	AATT	1 cut(s)	794
MluNI	TGGCCA	2 cut(s)	5, 647
Mly113I	GGCGCC	1 cut(s)	605
MlyI	GAGTC	1 cut(s)	578
MmeI	TCCRAC	2 cut(s)	208, 216
MnlI	CCTC	3 cut(s)	19, 152, 455
Mox20I	TGGCCA	2 cut(s)	5, 647
MscI	TGGCCA	2 cut(s)	5, 647
MseI	TTAA	1 cut(s)	164
Msp20I	TGGCCA	2 cut(s)	5, 647
MspI	CCGG	8 cut(s)	204, 291, 346, 501, 596, 663, 669, 680
MspR9I	CCNGG	2 cut(s)	346, 680
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	3 cut(s)	119, 776, 779
NarI	GGCGCC	1 cut(s)	605
NciI	CCSGG	2 cut(s)	346, 680
NcoI	CCATGG	1 cut(s)	725
NdeII	GATC	7 cut(s)	52, 264, 448, 516, 562, 657, 830
NlaIII	CATG	3 cut(s)	265, 382, 729
NlaIV	GGNNCC	7 cut(s)	466, 499, 606, 667, 756, 817, 832
NmeAIII	GCCGAG	1 cut(s)	148
NmuCI	GTSAC	3 cut(s)	305, 322, 822
PcsI	WCGNNNNNNNCGW	2 cut(s)	81, 699
PfeI	GAWTC	2 cut(s)	184, 231
PflMI	CCANNNNNTGG	1 cut(s)	764
PkrI	GCNGC	7 cut(s)	221, 224, 511, 700, 772, 781, 847
PleI	GAGTC	1 cut(s)	578
PluTI	GGCGCC	1 cut(s)	608
PpsI	GAGTC	1 cut(s)	578
PpuMI	RGGWCCY	1 cut(s)	20
Psp1406I	AACGTT	1 cut(s)	852
Psp5II	RGGWCCY	1 cut(s)	20
PspN4I	GGNNCC	7 cut(s)	466, 499, 606, 667, 756, 817, 832
PspPI	GGNCC	2 cut(s)	20, 755
PspPPI	RGGWCCY	1 cut(s)	20
PsuI	RGATCY	2 cut(s)	52, 830
RsaI	GTAC	2 cut(s)	152, 639
RsaNI	GTAC	2 cut(s)	151, 638
SaqAI	TTAA	1 cut(s)	164
SatI	GCNGC	7 cut(s)	220, 223, 510, 699, 771, 780, 846
Sau3AI	GATC	7 cut(s)	52, 264, 448, 516, 562, 657, 830
Sau96I	GGNCC	2 cut(s)	20, 755
SchI	GAGTC	1 cut(s)	578
ScrFI	CCNGG	2 cut(s)	346, 680
SfaNI	GCATC	3 cut(s)	67, 249, 681
SfoI	GGCGCC	1 cut(s)	606
SinI	GGWCC	2 cut(s)	20, 755
Sse9I	AATT	1 cut(s)	794
SspDI	GGCGCC	1 cut(s)	604
SspMI	CTAG	4 cut(s)	476, 506, 579, 684
StyD4I	CCNGG	2 cut(s)	344, 678
StyI	CCWWGG	2 cut(s)	235, 725
TaaI	ACNGT	4 cut(s)	160, 169, 458, 547
TaiI	ACGT	5 cut(s)	15, 329, 574, 594, 855
TaqI	TCGA	1 cut(s)	75
TasI	AATT	1 cut(s)	794
TatI	WGTACW	1 cut(s)	150
TauI	GCSGC	3 cut(s)	222, 225, 512
TfiI	GAWTC	2 cut(s)	184, 231
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TscAI	CASTG	2 cut(s)	395, 743
TseFI	GTSAC	3 cut(s)	305, 322, 822
TseI	GCWGC	4 cut(s)	698, 770, 779, 845
Tsp45I	GTSAC	3 cut(s)	305, 322, 822
TspDTI	ATGAA	2 cut(s)	259, 751
TspGWI	ACGGA	1 cut(s)	57
TspRI	CASTG	2 cut(s)	395, 743
Van91I	CCANNNNNTGG	1 cut(s)	764
VpaK11BI	GGWCC	2 cut(s)	20, 755
XmiI	GTMKAC	2 cut(s)	279, 540
XspI	CTAG	4 cut(s)	476, 506, 579, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.