Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003978

Physical Location & Seq

Genomic Coordinates Reverse (-)

19803473 .. 19805730

Gene Structure 2258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G53420.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGCAAAGGATGTGGAAGCCGTTCCCGGAGAAGGATTTCAGACAAGAGACTATCAAGATCCGCCACCAGCTCCGTTTATTGATGGAGCGGAGCTAAAGAAGTGGTCTTTCTACAGAGCAGTTATCGCAGAGTTCGTAGCCACTCTCCTCTTCTTATACATCACCGTTTTGACAGTCATCGGTTACAAGATTCAGTCCGATACTGATGCCGGTGGCGTAGATTGCGGCGGAGTTGGAATCCTCGGTATCGCTTGGGCCTTTGGTGGTATGATCTTCATCCTCGTCTACTGCACCGCCGGTATCTCTGGTGGTCACATTAACCCAGCGGTGACATTTGGGCTATTCTTGGCACGTAAAGTGTCGTTACCTAGGGCCCTATTGTACATAATCGCTCAGTGTTTGGGTGCGATTTGTGGAGTTGGTTTTGTCAAAGCCTTCCAAAGCTCTTACTACACCCGTTACGGAGGTGGAGCCAACTCTCTAGCCGATGGCTACAGCACAGGGACCGGTCTAGCCGCAGAGATCATTGGTACTTTCGTTCTTGTCTACACCGTCTTCTCTGCCACTGACCCCAAACGTAGTGCCAGAGACTCCCACGTTCCGGTGTTGGCGCCACTTCCAATCGGATTTGCCGTGTTCATGGTACATTTGGCTACCATTCCCATTACCGGAACCGGAATTAACCCGGCAAGGAGTTTCGGAGCTGCCGTAATCTACAACAAGAGCAAGCCATGGGATGACCACTGGATATTTTGGGTTGGACCATTCATTGGAGCTGCGATAGCTGCATTCTACCACCAATTCGTTCTGAGAGCTTCAGGTTCTAAGTCTCTTGGATCATTCAGAAGTGCTGCCAACGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005215 GO:0005372 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006833 GO:0006855 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0015250 GO:0015267 GO:0015318 GO:0015893 GO:0016020 GO:0016021 GO:0019899 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0031625 GO:0033993 GO:0034220 GO:0042044 GO:0042221 GO:0042493 GO:0042891 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044389 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:0080170 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

287

Amino Acids

30.47

Weight (kDa)

8.6

Isoelectric Point (pI)

30.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	31 - 266	8.7e-87	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37170 AT2G37170 AT2G37180 AT3G53420 AT3G53420 AT5G60660
fragaria_vesca	FvH4_6g15820 FvH4_6g15820 FvH4_6g15840 FvH4_6g15840 FvH4_6g15840
malus_domestica	MD04G1098300.v1.1 MD12G1119100.v1.1 MD12G1119200.v1.1
prunus_persica	Prupe.6G237000_v2.0.a1
pyrus_communis	pycom12g11780
rosa_chinensis	RchiOBHm_Chr3g0469531 RchiOBHm_Chr3g0469541
rosa_laevigata	RLG00000024341 RLG00000024342
rosa_multiflora	Rmu_sc0006483.1_g000001 Rmu_sc0009709.1_g000011
rosa_roxburghii	Rroxscaffold_6G00411780 Rroxscaffold_6G00411790
rosa_rugosa	Rorug03G0102300 Rorug03G0102400
rosa_samantha	Rh3AG151800 Rh3BG175300 Rh3BG175500 Rh3CG166600 Rh3DG200200
rosa_wichuraiana	Rw3G014300 Rw3G014320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	610
AccB7I	CCANNNNNTGG	1 cut(s)	770
AccBSI	CCGCTC	1 cut(s)	89
AccI	GTMKAC	2 cut(s)	285, 546
AciI	CCGC	7 cut(s)	62, 89, 225, 228, 294, 326, 516
AclWI	GGATC	2 cut(s)	53, 844
AcuI	CTGAAG	1 cut(s)	801
AcyI	GRCGYC	1 cut(s)	611
AfaI	GTAC	3 cut(s)	383, 532, 645
AfiI	CCNNNNNNNGG	4 cut(s)	32, 601, 668, 770
AgeI	ACCGGT	1 cut(s)	506
AluBI	AGCT	7 cut(s)	71, 94, 444, 704, 776, 785, 815
AluI	AGCT	7 cut(s)	71, 94, 444, 704, 776, 785, 815
Alw26I	GTCTC	3 cut(s)	42, 582, 834
AlwI	GGATC	2 cut(s)	53, 844
AoxI	GGCC	2 cut(s)	255, 372
ApaI	GGGCCC	1 cut(s)	376
ApeKI	GCWGC	4 cut(s)	704, 776, 785, 851
AsiGI	ACCGGT	1 cut(s)	506
Asp700I	GAANNNNTTC	2 cut(s)	21, 36
AspA2I	CCTAGG	1 cut(s)	368
AspLEI	GCGC	1 cut(s)	613
AspS9I	GGNCC	5 cut(s)	255, 372, 373, 504, 761
AsuC2I	CCSGG	2 cut(s)	27, 686
AsuHPI	GGTGA	2 cut(s)	154, 340
AvaII	GGWCC	2 cut(s)	504, 761
AvrII	CCTAGG	1 cut(s)	368
BaeGI	GKGCMC	1 cut(s)	376
BaeI	ACNNNNGTAYC	2 cut(s)	522, 555
BanI	GGYRCC	1 cut(s)	610
BanII	GRGCYC	1 cut(s)	376
BbsI	GAAGAC	1 cut(s)	547
BbvI	GCAGC	4 cut(s)	691, 763, 772, 838
BccI	CCATC	2 cut(s)	77, 482
BceAI	ACGGC	3 cut(s)	5, 617, 692
BcgI	CGANNNNNNTGC	2 cut(s)	188, 222
BcnI	CCSGG	2 cut(s)	27, 686
BcoDI	GTCTC	3 cut(s)	42, 582, 834
BfaI	CTAG	3 cut(s)	369, 482, 512
BfmI	CTRYAG	2 cut(s)	112, 493
BfoI	RGCGCY	1 cut(s)	614
BisI	GCNGC	6 cut(s)	226, 516, 705, 777, 786, 852
BlnI	CCTAGG	1 cut(s)	368
BlsI	GCNGC	6 cut(s)	227, 517, 706, 778, 787, 853
Bme1390I	CCNGG	2 cut(s)	27, 686
Bme18I	GGWCC	2 cut(s)	504, 761
BmgT120I	GGNCC	5 cut(s)	255, 372, 373, 504, 761
BmiI	GGNNCC	5 cut(s)	374, 472, 505, 612, 673
BmrFI	CCNGG	2 cut(s)	27, 686
BmsI	GCATC	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	547
BpuMI	CCSGG	2 cut(s)	27, 686
BsaAI	YACGTR	1 cut(s)	353
BsaBI	GATNNNNATC	1 cut(s)	275
BsaHI	GRCGYC	1 cut(s)	611
BsaJI	CCNNGG	3 cut(s)	241, 368, 731
BsaWI	WCCGGW	4 cut(s)	506, 601, 668, 674
BsaXI	ACNNNNNCTCC	2 cut(s)	693, 723
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 601, 668, 770
Bse118I	RCCGGY	3 cut(s)	209, 296, 506
Bse1I	ACTGG	1 cut(s)	749
Bse8I	GATNNNNATC	1 cut(s)	275
BseDI	CCNNGG	3 cut(s)	241, 368, 731
BseGI	GGATG	3 cut(s)	16, 276, 742
BseJI	GATNNNNATC	1 cut(s)	275
BseLI	CCNNNNNNNGG	4 cut(s)	32, 601, 668, 770
BseMII	CTCAG	2 cut(s)	407, 800
BseNI	ACTGG	1 cut(s)	749
BseRI	GAGGAG	1 cut(s)	137
BseSI	GKGCMC	1 cut(s)	376
BseXI	GCAGC	4 cut(s)	691, 763, 772, 838
BseYI	CCCAGC	1 cut(s)	322
BsgI	GTGCAG	1 cut(s)	274
BshFI	GGCC	2 cut(s)	257, 374
BshNI	GGYRCC	1 cut(s)	610
BshTI	ACCGGT	1 cut(s)	506
BsiSI	CCGG	8 cut(s)	27, 210, 297, 507, 602, 669, 675, 686
BslFI	GGGAC	1 cut(s)	517
BslI	CCNNNNNNNGG	4 cut(s)	32, 601, 668, 770
BsmAI	GTCTC	3 cut(s)	42, 582, 834
BsmFI	GGGAC	1 cut(s)	517
BsmI	GAATGC	1 cut(s)	788
BsnI	GGCC	2 cut(s)	257, 374
Bsp120I	GGGCCC	1 cut(s)	372
Bsp1286I	GDGCHC	1 cut(s)	376
Bsp1407I	TGTACA	1 cut(s)	381
Bsp143I	GATC	4 cut(s)	58, 270, 522, 836
Bsp19I	CCATGG	1 cut(s)	731
BspACI	CCGC	7 cut(s)	62, 89, 225, 228, 294, 326, 516
BspANI	GGCC	2 cut(s)	257, 374
BspCNI	CTCAG	2 cut(s)	406, 801
BspLI	GGNNCC	5 cut(s)	374, 472, 505, 612, 673
BspPI	GGATC	2 cut(s)	53, 844
BspT107I	GGYRCC	1 cut(s)	610
BsrBI	CCGCTC	1 cut(s)	89
BsrFI	RCCGGY	3 cut(s)	209, 296, 506
BsrGI	TGTACA	1 cut(s)	381
BsrI	ACTGG	1 cut(s)	749
BssAI	RCCGGY	3 cut(s)	209, 296, 506
BssECI	CCNNGG	3 cut(s)	241, 368, 731
BssMI	GATC	4 cut(s)	58, 270, 522, 836
BssNI	GRCGYC	1 cut(s)	611
BssT1I	CCWWGG	2 cut(s)	368, 731
Bst4CI	ACNGT	3 cut(s)	166, 175, 553
Bst6I	CTCTTC	1 cut(s)	155
BstACI	GRCGYC	1 cut(s)	611
BstAUI	TGTACA	1 cut(s)	381
BstBAI	YACGTR	1 cut(s)	353
BstC8I	GCNNGC	1 cut(s)	728
BstDEI	CTNAG	3 cut(s)	393, 809, 825
BstDSI	CCRYGG	1 cut(s)	731
BstF5I	GGATG	3 cut(s)	16, 276, 742
BstH2I	RGCGCY	1 cut(s)	614
BstHHI	GCGC	1 cut(s)	613
BstKTI	GATC	4 cut(s)	61, 273, 525, 839
BstMAI	GTCTC	3 cut(s)	42, 582, 834
BstMBI	GATC	4 cut(s)	58, 270, 522, 836
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 222, 782, 785
BstSCI	CCNGG	2 cut(s)	25, 684
BstSFI	CTRYAG	2 cut(s)	112, 493
BstSLI	GKGCMC	1 cut(s)	376
BstV1I	GCAGC	4 cut(s)	691, 763, 772, 838
BstV2I	GAAGAC	1 cut(s)	547
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
BsuRI	GGCC	2 cut(s)	257, 374
BtgI	CCRYGG	1 cut(s)	731
BtsCI	GGATG	3 cut(s)	16, 276, 742
BtsIMutI	CAGTG	3 cut(s)	401, 564, 742
Cac8I	GCNNGC	1 cut(s)	728
CfoI	GCGC	1 cut(s)	613
Cfr10I	RCCGGY	3 cut(s)	209, 296, 506
Cfr13I	GGNCC	5 cut(s)	255, 372, 373, 504, 761
Csp6I	GTAC	3 cut(s)	382, 531, 644
CspAI	ACCGGT	1 cut(s)	506
CspCI	CAANNNNNGTGG	1 cut(s)	29
CviAII	CATG	2 cut(s)	640, 732
CviQI	GTAC	3 cut(s)	382, 531, 644
DdeI	CTNAG	3 cut(s)	393, 809, 825
DinI	GGCGCC	1 cut(s)	612
DpnI	GATC	4 cut(s)	60, 272, 524, 838
DpnII	GATC	4 cut(s)	58, 270, 522, 836
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
EciI	GGCGGA	2 cut(s)	51, 243
Eco130I	CCWWGG	2 cut(s)	368, 731
Eco24I	GRGCYC	1 cut(s)	376
Eco47I	GGWCC	2 cut(s)	504, 761
Eco57I	CTGAAG	1 cut(s)	801
EcoO109I	RGGNCCY	2 cut(s)	372, 373
EcoT14I	CCWWGG	2 cut(s)	368, 731
EcoT38I	GRGCYC	1 cut(s)	376
EgeI	GGCGCC	1 cut(s)	612
EheI	GGCGCC	1 cut(s)	612
ErhI	CCWWGG	2 cut(s)	368, 731
FaeI	CATG	2 cut(s)	643, 735
FaiI	YATR	5 cut(s)	157, 269, 386, 641, 733
FaqI	GGGAC	1 cut(s)	517
FatI	CATG	2 cut(s)	639, 731
FblI	GTMKAC	2 cut(s)	285, 546
Fnu4HI	GCNGC	6 cut(s)	226, 516, 705, 777, 786, 852
FokI	GGATG	3 cut(s)	23, 263, 749
FriOI	GRGCYC	1 cut(s)	376
Fsp4HI	GCNGC	6 cut(s)	226, 516, 705, 777, 786, 852
FspBI	CTAG	3 cut(s)	369, 482, 512
GlaI	GCGC	1 cut(s)	612
GluI	GCNGC	6 cut(s)	226, 516, 705, 777, 786, 852
GsaI	CCCAGC	1 cut(s)	326
HaeII	RGCGCY	1 cut(s)	614
HaeIII	GGCC	2 cut(s)	257, 374
HapII	CCGG	8 cut(s)	27, 210, 297, 507, 602, 669, 675, 686
HhaI	GCGC	1 cut(s)	613
Hin1I	GRCGYC	1 cut(s)	611
Hin1II	CATG	2 cut(s)	643, 735
Hin6I	GCGC	1 cut(s)	611
HinP1I	GCGC	1 cut(s)	611
HinfI	GANTC	3 cut(s)	190, 237, 590
HpaII	CCGG	8 cut(s)	27, 210, 297, 507, 602, 669, 675, 686
HphI	GGTGA	2 cut(s)	154, 340
Hpy166II	GTNNAC	2 cut(s)	286, 547
Hpy188I	TCNGA	6 cut(s)	42, 199, 626, 701, 810, 845
Hpy188III	TCNNGA	1 cut(s)	56
Hpy8I	GTNNAC	2 cut(s)	286, 547
HpyAV	CCTTC	2 cut(s)	26, 445
HpyCH4III	ACNGT	3 cut(s)	166, 175, 553
HpyCH4IV	ACGT	4 cut(s)	352, 577, 597, 858
HpyCH4V	TGCA	2 cut(s)	291, 788
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 222, 782, 785
HpyF3I	CTNAG	3 cut(s)	393, 809, 825
HpySE526I	ACGT	4 cut(s)	352, 577, 597, 858
Hsp92I	GRCGYC	1 cut(s)	611
Hsp92II	CATG	2 cut(s)	643, 735
HspAI	GCGC	1 cut(s)	611
KasI	GGCGCC	1 cut(s)	610
Kzo9I	GATC	4 cut(s)	58, 270, 522, 836
LmnI	GCTCC	6 cut(s)	76, 86, 91, 470, 701, 773
Lsp1109I	GCAGC	4 cut(s)	691, 763, 772, 838
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	3 cut(s)	369, 482, 512
MaeII	ACGT	4 cut(s)	352, 577, 597, 858
MaeIII	GTNAC	5 cut(s)	182, 311, 328, 363, 458
MalI	GATC	4 cut(s)	60, 272, 524, 838
MbiI	CCGCTC	1 cut(s)	89
MboI	GATC	4 cut(s)	58, 270, 522, 836
MboII	GAAGA	3 cut(s)	142, 265, 547
MflI	RGATCY	1 cut(s)	58
MhlI	GDGCHC	1 cut(s)	376
MluCI	AATT	2 cut(s)	678, 800
Mly113I	GGCGCC	1 cut(s)	611
MlyI	GAGTC	1 cut(s)	584
MmeI	TCCRAC	2 cut(s)	214, 739
MnlI	CCTC	4 cut(s)	158, 251, 290, 458
MroXI	GAANNNNTTC	2 cut(s)	21, 36
MseI	TTAA	2 cut(s)	318, 681
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	8 cut(s)	27, 210, 297, 507, 602, 669, 675, 686
MspR9I	CCNGG	2 cut(s)	27, 686
Mva1269I	GAATGC	1 cut(s)	788
MwoI	GCNNNNNNNGC	4 cut(s)	125, 222, 782, 785
NarI	GGCGCC	1 cut(s)	611
NciI	CCSGG	2 cut(s)	27, 686
NcoI	CCATGG	1 cut(s)	731
NdeII	GATC	4 cut(s)	58, 270, 522, 836
NlaIII	CATG	2 cut(s)	643, 735
NlaIV	GGNNCC	5 cut(s)	374, 472, 505, 612, 673
NmuCI	GTSAC	2 cut(s)	311, 328
PcsI	WCGNNNNNNNCGW	3 cut(s)	132, 630, 705
PctI	GAATGC	1 cut(s)	788
PdmI	GAANNNNTTC	2 cut(s)	21, 36
PfeI	GAWTC	2 cut(s)	190, 237
PflMI	CCANNNNNTGG	1 cut(s)	770
PfoI	TCCNGGA	1 cut(s)	25
PinAI	ACCGGT	1 cut(s)	506
PkrI	GCNGC	6 cut(s)	227, 517, 706, 778, 787, 853
PleI	GAGTC	1 cut(s)	584
PluTI	GGCGCC	1 cut(s)	614
PpsI	GAGTC	1 cut(s)	584
Ppu21I	YACGTR	1 cut(s)	353
PspFI	CCCAGC	1 cut(s)	322
PspN4I	GGNNCC	5 cut(s)	374, 472, 505, 612, 673
PspOMI	GGGCCC	1 cut(s)	372
PspPI	GGNCC	5 cut(s)	255, 372, 373, 504, 761
PsuI	RGATCY	1 cut(s)	58
RsaI	GTAC	3 cut(s)	383, 532, 645
RsaNI	GTAC	3 cut(s)	382, 531, 644
SaqAI	TTAA	2 cut(s)	318, 681
SatI	GCNGC	6 cut(s)	226, 516, 705, 777, 786, 852
Sau3AI	GATC	4 cut(s)	58, 270, 522, 836
Sau96I	GGNCC	5 cut(s)	255, 372, 373, 504, 761
SchI	GAGTC	1 cut(s)	584
ScrFI	CCNGG	2 cut(s)	27, 686
SduI	GDGCHC	1 cut(s)	376
SfaNI	GCATC	1 cut(s)	196
SfcI	CTRYAG	2 cut(s)	112, 493
SfoI	GGCGCC	1 cut(s)	612
SinI	GGWCC	2 cut(s)	504, 761
Sse9I	AATT	2 cut(s)	678, 800
SsiI	CCGC	7 cut(s)	62, 89, 225, 228, 294, 326, 516
SspDI	GGCGCC	1 cut(s)	610
SspMI	CTAG	3 cut(s)	369, 482, 512
StyD4I	CCNGG	2 cut(s)	25, 684
StyI	CCWWGG	2 cut(s)	368, 731
TaaI	ACNGT	3 cut(s)	166, 175, 553
TaiI	ACGT	4 cut(s)	355, 580, 600, 861
TasI	AATT	2 cut(s)	678, 800
TatI	WGTACW	1 cut(s)	381
TauI	GCSGC	2 cut(s)	228, 518
TfiI	GAWTC	2 cut(s)	190, 237
Tru1I	TTAA	2 cut(s)	318, 681
Tru9I	TTAA	2 cut(s)	318, 681
TscAI	CASTG	3 cut(s)	401, 571, 749
TseFI	GTSAC	2 cut(s)	311, 328
TseI	GCWGC	4 cut(s)	704, 776, 785, 851
Tsp45I	GTSAC	2 cut(s)	311, 328
TspDTI	ATGAA	3 cut(s)	265, 628, 757
TspGWI	ACGGA	2 cut(s)	63, 477
TspRI	CASTG	3 cut(s)	401, 571, 749
Van91I	CCANNNNNTGG	1 cut(s)	770
VpaK11BI	GGWCC	2 cut(s)	504, 761
XmaJI	CCTAGG	1 cut(s)	368
XmiI	GTMKAC	2 cut(s)	285, 546
XmnI	GAANNNNTTC	2 cut(s)	21, 36
XspI	CTAG	3 cut(s)	369, 482, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.