Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003978

Physical Location & Seq

Genomic Coordinates Forward (+)

14177843 .. 14179467

Gene Structure 1625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g11780.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGGCAAAGACATTGAAGTTGGAGGTGGGTACTCAGCCAAGGACTACCAGGACCCTCCGCCGGAGCCGTTAATCAATGCGCAGGAGCTAGGGAAGTGGTCGTTCTACAGAGCCATCATAGCTGAGTTCATTGCCACTCTCTTGTTCTTGTACGTCACTGTGCTCACTGTGATTGGATACAAGAGCCAGACTGACGCTGCCTTAAACGGAGACCAATGTGGTGGTGTTGGCATTCTTGGTATTGCTTGGGCCTTTGGTGGCATGATCTTTGTCCTTGTTTACTGCACTGCTGGCATCTCTGGGGGTCACATAAACCCTGCAGTCACATTCGGGCTGCTTTTGGCAAGGAAGGTGTCACTAGTGAGAGCCGTATTGTACATGGTGGCTCAGTCGTTGGGAGCCATATGTGGTGTTGGGCTAGTGAAAGCCTTCCAAAGTTCTTACTATACTAAGTATGGCGGTGGAGCCAATGAGCTTGCCGATGGCTACAGCACAGGCACTGGATTGGGTGCTGAGATTGTTGGCACCTTCGTTCTTGTCTACACTGTCTTCTCTGCCACTGATCCCAAGAGAAATGCAAGAGACTCCCATGTCCCTGTATTGGCACCACTGCCAATTGGGTTTGCTGTGTTTATTGTTCACCTTGCCACAATCCCAATCACTGGTACTGGTATCAACCCAGCTAGAAGTCTTGGAGCTGCAGCGATCTACAACAGCGACAAGGCTTGGAATGACCAATGGATCTTCTGGGTTGGACCATTCATTGGAGCTGCCATTGCTGCCCTGTATCATCAATACATCTTGAGAGCAGGAGCTGTTAAAGCTCTGGGTTCTTTCAGGAGCTCCCCCAACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

286

Amino Acids

30.04

Weight (kDa)

8.33

Isoelectric Point (pI)

32.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37170 AT2G37170 AT2G37180 AT3G53420 AT3G53420 AT5G60660
fragaria_vesca	FvH4_6g15820 FvH4_6g15820 FvH4_6g15840 FvH4_6g15840 FvH4_6g15840
malus_domestica	MD04G1098300.v1.1 MD12G1119100.v1.1 MD12G1119200.v1.1
prunus_persica	Prupe.6G237000_v2.0.a1
pyrus_communis	pycom12g11780
rosa_chinensis	RchiOBHm_Chr3g0469531 RchiOBHm_Chr3g0469541
rosa_laevigata	RLG00000024341 RLG00000024342
rosa_multiflora	Rmu_sc0006483.1_g000001 Rmu_sc0009709.1_g000011
rosa_roxburghii	Rroxscaffold_6G00411780 Rroxscaffold_6G00411790
rosa_rugosa	Rorug03G0102300 Rorug03G0102400
rosa_samantha	Rh3AG151800 Rh3BG175300 Rh3BG175500 Rh3CG166600 Rh3DG200200
rosa_wichuraiana	Rw3G014300 Rw3G014320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	590
Acc16I	TGCGCA	1 cut(s)	81
AccB1I	GGYRCC	2 cut(s)	524, 604
AccB7I	CCANNNNNTGG	2 cut(s)	662, 764
AccI	GTMKAC	1 cut(s)	540
AciI	CCGC	2 cut(s)	59, 459
AclWI	GGATC	2 cut(s)	557, 749
AfaI	GTAC	4 cut(s)	32, 152, 377, 667
AfiI	CCNNNNNNNGG	4 cut(s)	61, 601, 662, 764
AgsI	TTSAA	1 cut(s)	17
AhlI	ACTAGT	1 cut(s)	358
AjnI	CCWGG	1 cut(s)	48
AluBI	AGCT	9 cut(s)	88, 122, 475, 683, 698, 770, 815, 824, 843
AluI	AGCT	9 cut(s)	88, 122, 475, 683, 698, 770, 815, 824, 843
Alw21I	GWGCWC	2 cut(s)	165, 845
Alw26I	GTCTC	2 cut(s)	204, 576
AlwI	GGATC	2 cut(s)	557, 749
AlwNI	CAGNNNCTG	2 cut(s)	500, 815
AoxI	GGCC	1 cut(s)	249
ApeKI	GCWGC	6 cut(s)	197, 334, 698, 701, 770, 779
Asp700I	GAANNNNTTC	1 cut(s)	428
AspLEI	GCGC	1 cut(s)	82
AspS9I	GGNCC	3 cut(s)	52, 249, 755
AsuHPI	GGTGA	1 cut(s)	632
AvaII	GGWCC	2 cut(s)	52, 755
BanI	GGYRCC	2 cut(s)	524, 604
BanII	GRGCYC	1 cut(s)	845
BbsI	GAAGAC	1 cut(s)	541
Bbv12I	GWGCWC	2 cut(s)	165, 845
BbvI	GCAGC	6 cut(s)	184, 321, 685, 713, 757, 766
BccI	CCATC	2 cut(s)	122, 476
BceAI	ACGGC	2 cut(s)	52, 353
BciT130I	CCWGG	1 cut(s)	50
BciVI	GTATCC	1 cut(s)	170
BcoDI	GTCTC	2 cut(s)	204, 576
BcuI	ACTAGT	1 cut(s)	358
BfaI	CTAG	4 cut(s)	89, 359, 419, 684
BfmI	CTRYAG	4 cut(s)	106, 318, 487, 699
BfuI	GTATCC	1 cut(s)	170
BisI	GCNGC	6 cut(s)	198, 335, 699, 702, 771, 780
BlsI	GCNGC	6 cut(s)	199, 336, 700, 703, 772, 781
Bme1390I	CCNGG	1 cut(s)	50
Bme18I	GGWCC	2 cut(s)	52, 755
BmgT120I	GGNCC	3 cut(s)	52, 249, 755
BmiI	GGNNCC	6 cut(s)	54, 66, 400, 466, 526, 606
BmrFI	CCNGG	1 cut(s)	50
BmsI	GCATC	1 cut(s)	303
BpiI	GAAGAC	1 cut(s)	541
BpuEI	CTTGAG	1 cut(s)	823
BsaI	GGTCTC	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	4 cut(s)	61, 601, 662, 764
Bse1I	ACTGG	3 cut(s)	505, 667, 673
Bse3DI	GCAATG	2 cut(s)	129, 774
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	39
BseLI	CCNNNNNNNGG	4 cut(s)	61, 601, 662, 764
BseMI	GCAATG	2 cut(s)	129, 774
BseMII	CTCAG	4 cut(s)	48, 114, 401, 504
BseNI	ACTGG	3 cut(s)	505, 667, 673
BseXI	GCAGC	6 cut(s)	184, 321, 685, 713, 757, 766
BseYI	CCCAGC	1 cut(s)	679
BsgI	GTGCAG	1 cut(s)	268
BshFI	GGCC	1 cut(s)	251
BshNI	GGYRCC	2 cut(s)	524, 604
BsiHKAI	GWGCWC	2 cut(s)	165, 845
BsiSI	CCGG	1 cut(s)	62
BslFI	GGGAC	1 cut(s)	578
BslI	CCNNNNNNNGG	4 cut(s)	61, 601, 662, 764
BsmAI	GTCTC	2 cut(s)	204, 576
BsmFI	GGGAC	1 cut(s)	578
BsmI	GAATGC	1 cut(s)	231
BsnI	GGCC	1 cut(s)	251
Bso31I	GGTCTC	1 cut(s)	204
Bsp1286I	GDGCHC	2 cut(s)	165, 845
Bsp1407I	TGTACA	1 cut(s)	375
Bsp143I	GATC	4 cut(s)	264, 562, 705, 741
BspACI	CCGC	2 cut(s)	59, 459
BspANI	GGCC	1 cut(s)	251
BspCNI	CTCAG	4 cut(s)	47, 115, 400, 505
BspLI	GGNNCC	6 cut(s)	54, 66, 400, 466, 526, 606
BspMAI	CTGCAG	2 cut(s)	322, 703
BspPI	GGATC	2 cut(s)	557, 749
BspT107I	GGYRCC	2 cut(s)	524, 604
BspTNI	GGTCTC	1 cut(s)	204
BsrDI	GCAATG	2 cut(s)	129, 774
BsrGI	TGTACA	1 cut(s)	375
BsrI	ACTGG	3 cut(s)	505, 667, 673
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	4 cut(s)	264, 562, 705, 741
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	3 cut(s)	160, 169, 547
BstAUI	TGTACA	1 cut(s)	375
BstC8I	GCNNGC	2 cut(s)	292, 477
BstDEI	CTNAG	5 cut(s)	34, 123, 387, 450, 513
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	4 cut(s)	267, 565, 708, 744
BstMAI	GTCTC	2 cut(s)	204, 576
BstMBI	GATC	4 cut(s)	264, 562, 705, 741
BstMWI	GCNNNNNNNGC	5 cut(s)	119, 291, 776, 779, 821
BstNI	CCWGG	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	48
BstSFI	CTRYAG	4 cut(s)	106, 318, 487, 699
BstV1I	GCAGC	6 cut(s)	184, 321, 685, 713, 757, 766
BstV2I	GAAGAC	1 cut(s)	541
BstX2I	RGATCY	1 cut(s)	741
BstXI	CCANNNNNNTGG	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	741
BsuI	GTATCC	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	251
BtsI	GCAGTG	2 cut(s)	285, 608
BtsIMutI	CAGTG	8 cut(s)	156, 165, 285, 498, 543, 558, 608, 660
Cac8I	GCNNGC	2 cut(s)	292, 477
CaiI	CAGNNNCTG	2 cut(s)	500, 815
CfoI	GCGC	1 cut(s)	82
Cfr13I	GGNCC	3 cut(s)	52, 249, 755
CseI	GACGC	1 cut(s)	203
Csp6I	GTAC	4 cut(s)	31, 151, 376, 666
CviAII	CATG	3 cut(s)	262, 379, 590
CviQI	GTAC	4 cut(s)	31, 151, 376, 666
DdeI	CTNAG	5 cut(s)	34, 123, 387, 450, 513
DpnI	GATC	4 cut(s)	266, 564, 707, 743
DpnII	GATC	4 cut(s)	264, 562, 705, 741
DrdI	GACNNNNNNGTC	1 cut(s)	590
DseDI	GACNNNNNNGTC	1 cut(s)	590
EciI	GGCGGA	1 cut(s)	48
Ecl136II	GAGCTC	1 cut(s)	843
Eco130I	CCWWGG	1 cut(s)	39
Eco24I	GRGCYC	1 cut(s)	845
Eco31I	GGTCTC	1 cut(s)	204
Eco47I	GGWCC	2 cut(s)	52, 755
Eco53kI	GAGCTC	1 cut(s)	843
EcoICRI	GAGCTC	1 cut(s)	843
EcoO109I	RGGNCCY	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	48
EcoT14I	CCWWGG	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	845
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	3 cut(s)	265, 382, 593
FaqI	GGGAC	1 cut(s)	578
FatI	CATG	3 cut(s)	261, 378, 589
FauNDI	CATATG	2 cut(s)	404, 854
FblI	GTMKAC	1 cut(s)	540
Fnu4HI	GCNGC	6 cut(s)	198, 335, 699, 702, 771, 780
FriOI	GRGCYC	1 cut(s)	845
Fsp4HI	GCNGC	6 cut(s)	198, 335, 699, 702, 771, 780
FspBI	CTAG	4 cut(s)	89, 359, 419, 684
FspI	TGCGCA	1 cut(s)	81
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	6 cut(s)	198, 335, 699, 702, 771, 780
GsaI	CCCAGC	1 cut(s)	683
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	1 cut(s)	62
HgaI	GACGC	1 cut(s)	203
HhaI	GCGC	1 cut(s)	82
Hin1II	CATG	3 cut(s)	265, 382, 593
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HinfI	GANTC	1 cut(s)	584
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	1 cut(s)	632
Hpy166II	GTNNAC	3 cut(s)	280, 541, 640
Hpy188III	TCNNGA	2 cut(s)	802, 838
Hpy8I	GTNNAC	3 cut(s)	280, 541, 640
HpyAV	CCTTC	3 cut(s)	343, 439, 538
HpyCH4III	ACNGT	3 cut(s)	160, 169, 547
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	4 cut(s)	285, 320, 578, 701
HpyF10VI	GCNNNNNNNGC	5 cut(s)	119, 291, 776, 779, 821
HpyF3I	CTNAG	5 cut(s)	34, 123, 387, 450, 513
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	3 cut(s)	265, 382, 593
HspAI	GCGC	1 cut(s)	80
Kzo9I	GATC	4 cut(s)	264, 562, 705, 741
LmnI	GCTCC	9 cut(s)	64, 85, 398, 464, 695, 767, 812, 840, 848
Lsp1109I	GCAGC	6 cut(s)	184, 321, 685, 713, 757, 766
LweI	GCATC	1 cut(s)	303
MaeI	CTAG	4 cut(s)	89, 359, 419, 684
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	4 cut(s)	154, 305, 322, 354
MalI	GATC	4 cut(s)	266, 564, 707, 743
MboI	GATC	4 cut(s)	264, 562, 705, 741
MboII	GAAGA	2 cut(s)	541, 736
MfeI	CAATTG	1 cut(s)	615
MflI	RGATCY	1 cut(s)	741
MhlI	GDGCHC	2 cut(s)	165, 845
MluCI	AATT	1 cut(s)	615
MlyI	GAGTC	1 cut(s)	578
MmeI	TCCRAC	1 cut(s)	733
MnlI	CCTC	2 cut(s)	17, 66
MroXI	GAANNNNTTC	1 cut(s)	428
MseI	TTAA	3 cut(s)	71, 203, 819
MspI	CCGG	1 cut(s)	62
MspR9I	CCNGG	1 cut(s)	50
MunI	CAATTG	1 cut(s)	615
Mva1269I	GAATGC	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	50
MwoI	GCNNNNNNNGC	5 cut(s)	119, 291, 776, 779, 821
NdeI	CATATG	2 cut(s)	404, 854
NdeII	GATC	4 cut(s)	264, 562, 705, 741
NlaIII	CATG	3 cut(s)	265, 382, 593
NlaIV	GGNNCC	6 cut(s)	54, 66, 400, 466, 526, 606
NmuCI	GTSAC	4 cut(s)	154, 305, 322, 354
NsbI	TGCGCA	1 cut(s)	81
PctI	GAATGC	1 cut(s)	231
PdmI	GAANNNNTTC	1 cut(s)	428
PflMI	CCANNNNNTGG	2 cut(s)	662, 764
PkrI	GCNGC	6 cut(s)	199, 336, 700, 703, 772, 781
PleI	GAGTC	1 cut(s)	578
PpsI	GAGTC	1 cut(s)	578
PpuMI	RGGWCCY	1 cut(s)	52
Psp124BI	GAGCTC	1 cut(s)	845
Psp5II	RGGWCCY	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	48
PspFI	CCCAGC	1 cut(s)	679
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	6 cut(s)	54, 66, 400, 466, 526, 606
PspPI	GGNCC	3 cut(s)	52, 249, 755
PspPPI	RGGWCCY	1 cut(s)	52
PstI	CTGCAG	2 cut(s)	322, 703
PstNI	CAGNNNCTG	2 cut(s)	500, 815
PsuI	RGATCY	1 cut(s)	741
RsaI	GTAC	4 cut(s)	32, 152, 377, 667
RsaNI	GTAC	4 cut(s)	31, 151, 376, 666
SacI	GAGCTC	1 cut(s)	845
SaqAI	TTAA	3 cut(s)	71, 203, 819
SatI	GCNGC	6 cut(s)	198, 335, 699, 702, 771, 780
Sau3AI	GATC	4 cut(s)	264, 562, 705, 741
Sau96I	GGNCC	3 cut(s)	52, 249, 755
SchI	GAGTC	1 cut(s)	578
ScrFI	CCNGG	1 cut(s)	50
SduI	GDGCHC	2 cut(s)	165, 845
SfaNI	GCATC	1 cut(s)	303
SfcI	CTRYAG	4 cut(s)	106, 318, 487, 699
SinI	GGWCC	2 cut(s)	52, 755
SmlI	CTYRAG	1 cut(s)	802
SmoI	CTYRAG	1 cut(s)	802
SpeI	ACTAGT	1 cut(s)	358
Sse9I	AATT	1 cut(s)	615
SsiI	CCGC	2 cut(s)	59, 459
SspMI	CTAG	4 cut(s)	89, 359, 419, 684
SstI	GAGCTC	1 cut(s)	845
StyD4I	CCNGG	1 cut(s)	48
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	3 cut(s)	160, 169, 547
TaiI	ACGT	1 cut(s)	156
TasI	AATT	1 cut(s)	615
TatI	WGTACW	1 cut(s)	375
Tru1I	TTAA	3 cut(s)	71, 203, 819
Tru9I	TTAA	3 cut(s)	71, 203, 819
TscAI	CASTG	8 cut(s)	163, 172, 292, 505, 550, 565, 615, 667
TseFI	GTSAC	4 cut(s)	154, 305, 322, 354
TseI	GCWGC	6 cut(s)	197, 334, 698, 701, 770, 779
Tsp45I	GTSAC	4 cut(s)	154, 305, 322, 354
TspDTI	ATGAA	2 cut(s)	118, 751
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	8 cut(s)	163, 172, 292, 505, 550, 565, 615, 667
Van91I	CCANNNNNTGG	2 cut(s)	662, 764
VpaK11BI	GGWCC	2 cut(s)	52, 755
XmiI	GTMKAC	1 cut(s)	540
XmnI	GAANNNNTTC	1 cut(s)	428
XspI	CTAG	4 cut(s)	89, 359, 419, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.