Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003978

Physical Location & Seq

Genomic Coordinates Forward (+)

23754179 .. 23756193

Gene Structure 2015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G237000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCCAAAGACATTGAAGTTGGTGGAGGGCAACATAGATTCTCAGGAAAAGACTACCAGGACCCTCCTCCAGCACCATTGATTGATGCAGAGGAGCTTGGACAGTGGTCTTTTTACAGAGCCATCATAGCTGAGTTCATAGCTACCCTCTTGTTCTTGTACATCACTGTGCTCACAGTGATTGGATACAAGAGCCAATCTGAGGGAGACCAATGTGGTGGTGTTGGCATTCTTGGCATTGCTTGGGCCTTTGGTGGCATGATCTTTGTCCTTGTTTACTGCACTGCTGGCATCTCCGGAGGGCACATAAACCCTGCTGTTACATTTGGGCTGTTTTTGGCTAGGAAGGTGTCACTGGTCAGAGCCATATTGTACATGGTGGCTCAGTCCTTGGGAGCCATATGTGGTGTTGGGCTTGTGAAAGCTTTCCAAAATGCGTACTTTACCAAGTATGGTGGAGGGGCCAATGGGCTTGCTGATGGGTACAGCCAAGGCACAGGTTTGGCTGCTGAGATTATTGGCACCTTTGTTCTTGTCTACACTGTCTTCTCTGCCACTGACCCCAAGAGAAATGCAAGGGATTCACATGTCCCAGTTTTGGCACCACTGCCAATTGGGTTTGCTGTGTTTATTGTGCACCTTGCCACAATCCCAATCACTGGCACTGGCATAAACCCAGCAAGAAGCCTTGGAGCTGCAGTGATCTACAACAATGACAAGGCTTGGGATGACCAATGGATCTTCTGGGTTGGGCCATTCATTGGTGCTGCCATTGCTGCCTTCTATCACCAATACATACTGAGAGCAGGAGCTGTTAAAGCTCTTGGCTCTTTCAGGAGCTCCTCCAACATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

285

Amino Acids

30.14

Weight (kDa)

7.71

Isoelectric Point (pI)

36.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37170 AT2G37170 AT2G37180 AT3G53420 AT3G53420 AT5G60660
fragaria_vesca	FvH4_6g15820 FvH4_6g15820 FvH4_6g15840 FvH4_6g15840 FvH4_6g15840
malus_domestica	MD04G1098300.v1.1 MD12G1119100.v1.1 MD12G1119200.v1.1
prunus_persica	Prupe.6G237000_v2.0.a1
pyrus_communis	pycom12g11780
rosa_chinensis	RchiOBHm_Chr3g0469531 RchiOBHm_Chr3g0469541
rosa_laevigata	RLG00000024341 RLG00000024342
rosa_multiflora	Rmu_sc0006483.1_g000001 Rmu_sc0009709.1_g000011
rosa_roxburghii	Rroxscaffold_6G00411780 Rroxscaffold_6G00411790
rosa_rugosa	Rorug03G0102300 Rorug03G0102400
rosa_samantha	Rh3AG151800 Rh3BG175300 Rh3BG175500 Rh3CG166600 Rh3DG200200
rosa_wichuraiana	Rw3G014300 Rw3G014320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	521, 601
AccB7I	CCANNNNNTGG	2 cut(s)	659, 761
AccI	GTMKAC	1 cut(s)	537
AccIII	TCCGGA	1 cut(s)	296
AclWI	GGATC	1 cut(s)	746
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	4 cut(s)	161, 374, 440, 485
AfiI	CCNNNNNNNGG	4 cut(s)	202, 598, 659, 761
AflIII	ACRYGT	1 cut(s)	586
AgsI	TTSAA	1 cut(s)	17
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	8 cut(s)	97, 131, 143, 425, 695, 812, 821, 840
AluI	AGCT	8 cut(s)	97, 131, 143, 425, 695, 812, 821, 840
Alw21I	GWGCWC	3 cut(s)	174, 639, 842
Alw26I	GTCTC	1 cut(s)	201
Alw44I	GTGCAC	1 cut(s)	635
AlwI	GGATC	1 cut(s)	746
AlwNI	CAGNNNCTG	1 cut(s)	812
Aor13HI	TCCGGA	1 cut(s)	296
AoxI	GGCC	4 cut(s)	3, 246, 462, 752
ApaLI	GTGCAC	1 cut(s)	635
ApeKI	GCWGC	4 cut(s)	506, 695, 767, 776
Asp700I	GAANNNNTTC	1 cut(s)	425
AspS9I	GGNCC	4 cut(s)	61, 246, 462, 752
AsuHPI	GGTGA	1 cut(s)	779
AvaII	GGWCC	1 cut(s)	61
BaeGI	GKGCMC	2 cut(s)	306, 639
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	521, 601
BanII	GRGCYC	1 cut(s)	842
BbsI	GAAGAC	1 cut(s)	538
Bbv12I	GWGCWC	3 cut(s)	174, 639, 842
BbvI	GCAGC	4 cut(s)	493, 682, 754, 763
BccI	CCATC	2 cut(s)	131, 473
BciT130I	CCWGG	1 cut(s)	59
BciVI	GTATCC	1 cut(s)	179
BcoDI	GTCTC	1 cut(s)	201
BfaI	CTAG	1 cut(s)	342
BfmI	CTRYAG	1 cut(s)	696
BfuI	GTATCC	1 cut(s)	179
BisI	GCNGC	4 cut(s)	507, 696, 768, 777
BlsI	GCNGC	4 cut(s)	508, 697, 769, 778
Bme1390I	CCNGG	1 cut(s)	59
Bme18I	GGWCC	1 cut(s)	61
BmgT120I	GGNCC	4 cut(s)	61, 246, 462, 752
BmiI	GGNNCC	5 cut(s)	63, 397, 463, 523, 603
BmrFI	CCNGG	1 cut(s)	59
BmrI	ACTGGG	1 cut(s)	587
BmsI	GCATC	2 cut(s)	76, 300
BmuI	ACTGGG	1 cut(s)	587
BoxI	GACNNNNGTC	1 cut(s)	106
BpiI	GAAGAC	1 cut(s)	538
BpmI	CTGGAG	1 cut(s)	54
BsaI	GGTCTC	1 cut(s)	201
BsaJI	CCNNGG	3 cut(s)	390, 490, 688
BsaWI	WCCGGW	1 cut(s)	296
BsaXI	ACNNNNNCTCC	2 cut(s)	684, 714
Bsc4I	CCNNNNNNNGG	4 cut(s)	202, 598, 659, 761
Bse1I	ACTGG	4 cut(s)	360, 593, 664, 670
Bse3DI	GCAATG	2 cut(s)	237, 771
BseAI	TCCGGA	1 cut(s)	296
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	3 cut(s)	390, 490, 688
BseGI	GGATG	1 cut(s)	733
BseLI	CCNNNNNNNGG	4 cut(s)	202, 598, 659, 761
BseMI	GCAATG	2 cut(s)	237, 771
BseMII	CTCAG	6 cut(s)	57, 123, 192, 398, 501, 791
BseNI	ACTGG	4 cut(s)	360, 593, 664, 670
BseRI	GAGGAG	3 cut(s)	57, 107, 832
BseSI	GKGCMC	2 cut(s)	306, 639
BseXI	GCAGC	4 cut(s)	493, 682, 754, 763
BseYI	CCCAGC	1 cut(s)	676
BsgI	GTGCAG	1 cut(s)	265
BshFI	GGCC	4 cut(s)	5, 248, 464, 754
BshNI	GGYRCC	2 cut(s)	521, 601
BsiHKAI	GWGCWC	3 cut(s)	174, 639, 842
BsiSI	CCGG	1 cut(s)	297
BslFI	GGGAC	1 cut(s)	575
BslI	CCNNNNNNNGG	4 cut(s)	202, 598, 659, 761
BsmAI	GTCTC	1 cut(s)	201
BsmFI	GGGAC	1 cut(s)	575
BsmI	GAATGC	1 cut(s)	228
BsnI	GGCC	4 cut(s)	5, 248, 464, 754
Bso31I	GGTCTC	1 cut(s)	201
Bsp1286I	GDGCHC	4 cut(s)	174, 306, 639, 842
Bsp13I	TCCGGA	1 cut(s)	296
Bsp1407I	TGTACA	2 cut(s)	159, 372
Bsp143I	GATC	3 cut(s)	261, 702, 738
BspANI	GGCC	4 cut(s)	5, 248, 464, 754
BspCNI	CTCAG	6 cut(s)	56, 124, 193, 397, 502, 792
BspEI	TCCGGA	1 cut(s)	296
BspLI	GGNNCC	5 cut(s)	63, 397, 463, 523, 603
BspMAI	CTGCAG	1 cut(s)	700
BspPI	GGATC	1 cut(s)	746
BspT107I	GGYRCC	2 cut(s)	521, 601
BspTNI	GGTCTC	1 cut(s)	201
BsrDI	GCAATG	2 cut(s)	237, 771
BsrGI	TGTACA	2 cut(s)	159, 372
BsrI	ACTGG	4 cut(s)	360, 593, 664, 670
BssECI	CCNNGG	3 cut(s)	390, 490, 688
BssMI	GATC	3 cut(s)	261, 702, 738
BssT1I	CCWWGG	3 cut(s)	390, 490, 688
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	4 cut(s)	105, 169, 178, 544
BstAUI	TGTACA	2 cut(s)	159, 372
BstC8I	GCNNGC	2 cut(s)	289, 474
BstDEI	CTNAG	6 cut(s)	43, 132, 201, 384, 510, 800
BstF5I	GGATG	1 cut(s)	733
BstKTI	GATC	3 cut(s)	264, 705, 741
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	3 cut(s)	261, 702, 738
BstMWI	GCNNNNNNNGC	6 cut(s)	128, 234, 288, 773, 776, 818
BstNI	CCWGG	1 cut(s)	59
BstNSI	RCATGY	1 cut(s)	590
BstPAI	GACNNNNGTC	1 cut(s)	106
BstSCI	CCNGG	1 cut(s)	57
BstSFI	CTRYAG	1 cut(s)	696
BstSLI	GKGCMC	2 cut(s)	306, 639
BstV1I	GCAGC	4 cut(s)	493, 682, 754, 763
BstV2I	GAAGAC	1 cut(s)	538
BstX2I	RGATCY	1 cut(s)	738
BstXI	CCANNNNNNTGG	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	738
BsuI	GTATCC	1 cut(s)	179
BsuRI	GGCC	4 cut(s)	5, 248, 464, 754
BtsCI	GGATG	1 cut(s)	733
BtsI	GCAGTG	3 cut(s)	282, 605, 705
Cac8I	GCNNGC	2 cut(s)	289, 474
CaiI	CAGNNNCTG	1 cut(s)	812
Cfr13I	GGNCC	4 cut(s)	61, 246, 462, 752
Csp6I	GTAC	4 cut(s)	160, 373, 439, 484
CspCI	CAANNNNNGTGG	2 cut(s)	436, 471
CviAII	CATG	3 cut(s)	259, 376, 587
CviQI	GTAC	4 cut(s)	160, 373, 439, 484
DdeI	CTNAG	6 cut(s)	43, 132, 201, 384, 510, 800
DpnI	GATC	3 cut(s)	263, 704, 740
DpnII	GATC	3 cut(s)	261, 702, 738
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	840
Eco130I	CCWWGG	3 cut(s)	390, 490, 688
Eco24I	GRGCYC	1 cut(s)	842
Eco31I	GGTCTC	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	61
Eco53kI	GAGCTC	1 cut(s)	840
EcoICRI	GAGCTC	1 cut(s)	840
EcoO109I	RGGNCCY	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	57
EcoT14I	CCWWGG	3 cut(s)	390, 490, 688
EcoT38I	GRGCYC	1 cut(s)	842
ErhI	CCWWGG	3 cut(s)	390, 490, 688
FaeI	CATG	3 cut(s)	262, 379, 590
FaqI	GGGAC	1 cut(s)	575
FatI	CATG	3 cut(s)	258, 375, 586
FauNDI	CATATG	1 cut(s)	401
FblI	GTMKAC	1 cut(s)	537
Fnu4HI	GCNGC	4 cut(s)	507, 696, 768, 777
FokI	GGATG	1 cut(s)	740
FriOI	GRGCYC	1 cut(s)	842
Fsp4HI	GCNGC	4 cut(s)	507, 696, 768, 777
FspBI	CTAG	1 cut(s)	342
GluI	GCNGC	4 cut(s)	507, 696, 768, 777
GsaI	CCCAGC	1 cut(s)	680
GsuI	CTGGAG	1 cut(s)	54
HaeIII	GGCC	4 cut(s)	5, 248, 464, 754
HapII	CCGG	1 cut(s)	297
Hin1II	CATG	3 cut(s)	262, 379, 590
HindIII	AAGCTT	1 cut(s)	423
HinfI	GANTC	2 cut(s)	39, 581
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	1 cut(s)	779
Hpy166II	GTNNAC	3 cut(s)	277, 538, 637
Hpy188I	TCNGA	2 cut(s)	202, 362
Hpy188III	TCNNGA	3 cut(s)	45, 297, 835
Hpy8I	GTNNAC	3 cut(s)	277, 538, 637
HpyAV	CCTTC	2 cut(s)	340, 790
HpyCH4III	ACNGT	4 cut(s)	105, 169, 178, 544
HpyCH4V	TGCA	5 cut(s)	89, 282, 575, 637, 698
HpyF10VI	GCNNNNNNNGC	6 cut(s)	128, 234, 288, 773, 776, 818
HpyF3I	CTNAG	6 cut(s)	43, 132, 201, 384, 510, 800
Hsp92II	CATG	3 cut(s)	262, 379, 590
Kpn2I	TCCGGA	1 cut(s)	296
Kzo9I	GATC	3 cut(s)	261, 702, 738
LmnI	GCTCC	6 cut(s)	94, 395, 692, 809, 837, 845
Lsp1109I	GCAGC	4 cut(s)	493, 682, 754, 763
LweI	GCATC	2 cut(s)	76, 300
MaeI	CTAG	1 cut(s)	342
MaeIII	GTNAC	2 cut(s)	319, 351
MalI	GATC	3 cut(s)	263, 704, 740
MboI	GATC	3 cut(s)	261, 702, 738
MboII	GAAGA	2 cut(s)	538, 733
MfeI	CAATTG	1 cut(s)	612
MflI	RGATCY	1 cut(s)	738
MhlI	GDGCHC	4 cut(s)	174, 306, 639, 842
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	612
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	9 cut(s)	20, 75, 78, 85, 158, 196, 293, 452, 853
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	296
MroXI	GAANNNNTTC	1 cut(s)	425
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	816
MslI	CAYNNNNRTG	1 cut(s)	167
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	297
MspR9I	CCNGG	1 cut(s)	59
MunI	CAATTG	1 cut(s)	612
Mva1269I	GAATGC	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	59
MwoI	GCNNNNNNNGC	6 cut(s)	128, 234, 288, 773, 776, 818
NdeI	CATATG	1 cut(s)	401
NdeII	GATC	3 cut(s)	261, 702, 738
NlaIII	CATG	3 cut(s)	262, 379, 590
NlaIV	GGNNCC	5 cut(s)	63, 397, 463, 523, 603
NmuCI	GTSAC	1 cut(s)	351
NspI	RCATGY	1 cut(s)	590
PciI	ACATGT	1 cut(s)	586
PctI	GAATGC	1 cut(s)	228
PdmI	GAANNNNTTC	1 cut(s)	425
PfeI	GAWTC	2 cut(s)	39, 581
PflMI	CCANNNNNTGG	2 cut(s)	659, 761
PkrI	GCNGC	4 cut(s)	508, 697, 769, 778
PpuMI	RGGWCCY	1 cut(s)	61
PscI	ACATGT	1 cut(s)	586
PshAI	GACNNNNGTC	1 cut(s)	106
Psp124BI	GAGCTC	1 cut(s)	842
Psp5II	RGGWCCY	1 cut(s)	61
Psp6I	CCWGG	1 cut(s)	57
PspFI	CCCAGC	1 cut(s)	676
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	5 cut(s)	63, 397, 463, 523, 603
PspPI	GGNCC	4 cut(s)	61, 246, 462, 752
PspPPI	RGGWCCY	1 cut(s)	61
PstI	CTGCAG	1 cut(s)	700
PstNI	CAGNNNCTG	1 cut(s)	812
PsuI	RGATCY	1 cut(s)	738
RsaI	GTAC	4 cut(s)	161, 374, 440, 485
RsaNI	GTAC	4 cut(s)	160, 373, 439, 484
RseI	CAYNNNNRTG	1 cut(s)	167
SacI	GAGCTC	1 cut(s)	842
SaqAI	TTAA	1 cut(s)	816
SatI	GCNGC	4 cut(s)	507, 696, 768, 777
Sau3AI	GATC	3 cut(s)	261, 702, 738
Sau96I	GGNCC	4 cut(s)	61, 246, 462, 752
ScrFI	CCNGG	1 cut(s)	59
SduI	GDGCHC	4 cut(s)	174, 306, 639, 842
SfaNI	GCATC	2 cut(s)	76, 300
SfcI	CTRYAG	1 cut(s)	696
SinI	GGWCC	1 cut(s)	61
SmiMI	CAYNNNNRTG	1 cut(s)	167
Sse9I	AATT	1 cut(s)	612
SspMI	CTAG	1 cut(s)	342
SstI	GAGCTC	1 cut(s)	842
StyD4I	CCNGG	1 cut(s)	57
StyI	CCWWGG	3 cut(s)	390, 490, 688
TaaI	ACNGT	4 cut(s)	105, 169, 178, 544
TasI	AATT	1 cut(s)	612
TatI	WGTACW	2 cut(s)	159, 372
TfiI	GAWTC	2 cut(s)	39, 581
Tru1I	TTAA	1 cut(s)	816
Tru9I	TTAA	1 cut(s)	816
TseFI	GTSAC	1 cut(s)	351
TseI	GCWGC	4 cut(s)	506, 695, 767, 776
Tsp45I	GTSAC	1 cut(s)	351
TspDTI	ATGAA	2 cut(s)	127, 748
Van91I	CCANNNNNTGG	2 cut(s)	659, 761
VneI	GTGCAC	1 cut(s)	635
VpaK11BI	GGWCC	1 cut(s)	61
XceI	RCATGY	1 cut(s)	590
XcmI	CCANNNNNNNNNTGG	1 cut(s)	373
XmiI	GTMKAC	1 cut(s)	537
XmnI	GAANNNNTTC	1 cut(s)	425
XspI	CTAG	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.