Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003978

Physical Location & Seq

Genomic Coordinates Forward (+)

15617635 .. 15619155

Gene Structure 1521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G37180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCTAAAGACGTGGAAGGACCTGATGGATTTCAGACGAGAGATTACGAAGATCCTCCGCCAACACCGTTTTTCGACGCAGAGGAGCTTACCAAGTGGTCTTTATACAGAGCAGTCATCGCCGAGTTCGTAGCCACTCTCCTCTTCTTGTACGTCACCGTTTTAACTGTCATTGGTTACAAGATTCAGTCCGACACAAAAGCCGGTGGAGTTGACTGCGGCGGCGTCGGAATCCTTGGCATCGCGTGGGCTTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACCGCCGGTATCTCAGGTGGTCACATAAACCCTGCGGTGACGTTTGGTTTGTTCTTAGCCCGGAAGGTATCGCTGATTAGGGCGGTGCTTTACATGGTGGCTCAGTGTTTGGGTGCTATTTGTGGAGTTGGGTTTGTGAAGGCATTTCAAAGCTCTCACTATGTTAATTACGGTGGAGGAGCCAACTTTCTAGCTGACGGCTACAATACAGGCACCGGACTCGCGGCAGAGATCATCGGAACATTCGTGCTTGTCTACACAGTCTTCTCCGCTACTGATCCCAAACGCAACGCTAGAGACTCCCACGTTCCGGTTTTGGCGCCACTTCCGATTGGGTTTGCGGTGTTTATGGTACATTTGGCCACTATTCCGATCACCGGAACCGGTATCAACCCGGCTAGGAGTTTCGGAGCCGCCGTAATCTTTAACAAGAGCAAGCCATGGGATGACCACTGGATATTCTGGGTGGGACCATTCATTGGAGCTACGATAGCTGCATTTTATCACCAATTCGTTCTAAGGGCCTCAGGCTCCAAGTCCCTCGGTTCATTCAGAAGTGCAGCCAACGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005215 GO:0005372 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006833 GO:0006855 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0015250 GO:0015267 GO:0015318 GO:0015893 GO:0016020 GO:0016021 GO:0019899 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0031625 GO:0033993 GO:0034220 GO:0042044 GO:0042221 GO:0042493 GO:0042891 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044389 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:0080170 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

285

Amino Acids

30.43

Weight (kDa)

7.69

Isoelectric Point (pI)

29.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	29 - 264	5.2e-85	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37170 AT2G37170 AT2G37180 AT3G53420 AT3G53420 AT5G60660
fragaria_vesca	FvH4_6g15820 FvH4_6g15820 FvH4_6g15840 FvH4_6g15840 FvH4_6g15840
malus_domestica	MD04G1098300.v1.1 MD12G1119100.v1.1 MD12G1119200.v1.1
prunus_persica	Prupe.6G237000_v2.0.a1
pyrus_communis	pycom12g11780
rosa_chinensis	RchiOBHm_Chr3g0469531 RchiOBHm_Chr3g0469541
rosa_laevigata	RLG00000024341 RLG00000024342
rosa_multiflora	Rmu_sc0006483.1_g000001 Rmu_sc0009709.1_g000011
rosa_roxburghii	Rroxscaffold_6G00411780 Rroxscaffold_6G00411790
rosa_rugosa	Rorug03G0102300 Rorug03G0102400
rosa_samantha	Rh3AG151800 Rh3BG175300 Rh3BG175500 Rh3CG166600 Rh3DG200200
rosa_wichuraiana	Rw3G014300 Rw3G014320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	497, 604
AccB7I	CCANNNNNTGG	1 cut(s)	764
AccI	GTMKAC	2 cut(s)	279, 540
AccII	CGCG	2 cut(s)	245, 509
AclI	AACGTT	1 cut(s)	852
AclWI	GGATC	2 cut(s)	47, 557
AcoI	YGGCCR	1 cut(s)	645
AcyI	GRCGYC	2 cut(s)	225, 605
AfaI	GTAC	2 cut(s)	152, 639
AfiI	CCNNNNNNNGG	3 cut(s)	595, 662, 764
AgeI	ACCGGT	1 cut(s)	668
AgsI	TTSAA	1 cut(s)	434
AjiI	CACGTC	1 cut(s)	13
AluBI	AGCT	5 cut(s)	88, 438, 479, 770, 779
AluI	AGCT	5 cut(s)	88, 438, 479, 770, 779
Alw26I	GTCTC	1 cut(s)	576
AlwI	GGATC	2 cut(s)	47, 557
AoxI	GGCC	2 cut(s)	645, 807
ApeKI	GCWGC	2 cut(s)	779, 845
ArsI	GACNNNNNNTTYG	2 cut(s)	316, 348
AsiGI	ACCGGT	1 cut(s)	668
AspLEI	GCGC	1 cut(s)	607
AspS9I	GGNCC	3 cut(s)	20, 755, 807
AsuC2I	CCSGG	2 cut(s)	346, 680
AsuHPI	GGTGA	4 cut(s)	148, 334, 652, 782
AvaII	GGWCC	2 cut(s)	20, 755
AxyI	CCTNAGG	1 cut(s)	811
BalI	TGGCCA	1 cut(s)	647
BanI	GGYRCC	2 cut(s)	497, 604
BbsI	GAAGAC	1 cut(s)	541
BbvI	GCAGC	1 cut(s)	766
BccI	CCATC	1 cut(s)	20
BceAI	ACGGC	2 cut(s)	499, 686
BcgI	CGANNNNNNTGC	2 cut(s)	487, 521
BcnI	CCSGG	2 cut(s)	346, 680
BcoDI	GTCTC	1 cut(s)	576
BfaI	CTAG	3 cut(s)	476, 579, 684
BfoI	RGCGCY	1 cut(s)	608
BisI	GCNGC	6 cut(s)	220, 223, 510, 699, 780, 846
BlsI	GCNGC	6 cut(s)	221, 224, 511, 700, 781, 847
Bme1390I	CCNGG	2 cut(s)	346, 680
Bme18I	GGWCC	2 cut(s)	20, 755
BmgBI	CACGTC	1 cut(s)	13
BmgT120I	GGNCC	3 cut(s)	20, 755, 807
BmiI	GGNNCC	7 cut(s)	466, 499, 606, 667, 697, 756, 817
BmrFI	CCNGG	2 cut(s)	346, 680
BmsI	GCATC	1 cut(s)	249
BpiI	GAAGAC	1 cut(s)	541
BpuMI	CCSGG	2 cut(s)	346, 680
BsaBI	GATNNNNATC	1 cut(s)	269
BsaHI	GRCGYC	2 cut(s)	225, 605
BsaJI	CCNNGG	3 cut(s)	235, 725, 826
BsaWI	WCCGGW	4 cut(s)	500, 595, 662, 668
BsaXI	ACNNNNNCTCC	2 cut(s)	687, 717
Bsc4I	CCNNNNNNNGG	3 cut(s)	595, 662, 764
Bse118I	RCCGGY	3 cut(s)	203, 290, 668
Bse1I	ACTGG	1 cut(s)	743
Bse21I	CCTNAGG	1 cut(s)	811
Bse8I	GATNNNNATC	1 cut(s)	269
BseDI	CCNNGG	3 cut(s)	235, 725, 826
BseGI	GGATG	2 cut(s)	270, 736
BseJI	GATNNNNATC	1 cut(s)	269
BseLI	CCNNNNNNNGG	3 cut(s)	595, 662, 764
BseMII	CTCAG	3 cut(s)	312, 401, 825
BseNI	ACTGG	1 cut(s)	743
BseRI	GAGGAG	3 cut(s)	98, 131, 477
BseXI	GCAGC	1 cut(s)	766
BsgI	GTGCAG	1 cut(s)	268
Bsh1236I	CGCG	2 cut(s)	245, 509
BshFI	GGCC	2 cut(s)	647, 809
BshNI	GGYRCC	2 cut(s)	497, 604
BshTI	ACCGGT	1 cut(s)	668
BsiSI	CCGG	8 cut(s)	204, 291, 346, 501, 596, 663, 669, 680
BslFI	GGGAC	2 cut(s)	768, 808
BslI	CCNNNNNNNGG	3 cut(s)	595, 662, 764
BsmAI	GTCTC	1 cut(s)	576
BsmFI	GGGAC	2 cut(s)	768, 808
BsnI	GGCC	2 cut(s)	647, 809
Bsp143I	GATC	5 cut(s)	52, 264, 516, 562, 657
Bsp19I	CCATGG	1 cut(s)	725
BspANI	GGCC	2 cut(s)	647, 809
BspCNI	CTCAG	3 cut(s)	311, 400, 824
BspFNI	CGCG	2 cut(s)	245, 509
BspLI	GGNNCC	7 cut(s)	466, 499, 606, 667, 697, 756, 817
BspPI	GGATC	2 cut(s)	47, 557
BspT107I	GGYRCC	2 cut(s)	497, 604
BsrFI	RCCGGY	3 cut(s)	203, 290, 668
BsrI	ACTGG	1 cut(s)	743
BssAI	RCCGGY	3 cut(s)	203, 290, 668
BssECI	CCNNGG	3 cut(s)	235, 725, 826
BssMI	GATC	5 cut(s)	52, 264, 516, 562, 657
BssNI	GRCGYC	2 cut(s)	225, 605
BssT1I	CCWWGG	2 cut(s)	235, 725
Bst4CI	ACNGT	5 cut(s)	69, 160, 169, 458, 547
Bst6I	CTCTTC	1 cut(s)	149
BstACI	GRCGYC	2 cut(s)	225, 605
BstC8I	GCNNGC	1 cut(s)	722
BstDEI	CTNAG	5 cut(s)	298, 340, 387, 803, 811
BstDSI	CCRYGG	1 cut(s)	725
BstF5I	GGATG	2 cut(s)	270, 736
BstFNI	CGCG	2 cut(s)	245, 509
BstH2I	RGCGCY	1 cut(s)	608
BstHHI	GCGC	1 cut(s)	607
BstKTI	GATC	5 cut(s)	55, 267, 519, 565, 660
BstMAI	GTCTC	1 cut(s)	576
BstMBI	GATC	5 cut(s)	52, 264, 516, 562, 657
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 776
BstSCI	CCNGG	2 cut(s)	344, 678
BstUI	CGCG	2 cut(s)	245, 509
BstV1I	GCAGC	1 cut(s)	766
BstV2I	GAAGAC	1 cut(s)	541
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
Bsu36I	CCTNAGG	1 cut(s)	811
BsuRI	GGCC	2 cut(s)	647, 809
BtgI	CCRYGG	1 cut(s)	725
BtgZI	GCGATG	2 cut(s)	103, 226
BtrI	CACGTC	1 cut(s)	13
BtsCI	GGATG	2 cut(s)	270, 736
BtsIMutI	CAGTG	2 cut(s)	395, 736
Cac8I	GCNNGC	1 cut(s)	722
CfoI	GCGC	1 cut(s)	607
Cfr10I	RCCGGY	3 cut(s)	203, 290, 668
Cfr13I	GGNCC	3 cut(s)	20, 755, 807
CseI	GACGC	2 cut(s)	86, 214
Csp6I	GTAC	2 cut(s)	151, 638
CspAI	ACCGGT	1 cut(s)	668
CviAII	CATG	3 cut(s)	262, 379, 726
CviQI	GTAC	2 cut(s)	151, 638
DdeI	CTNAG	5 cut(s)	298, 340, 387, 803, 811
DinI	GGCGCC	1 cut(s)	606
DpnI	GATC	5 cut(s)	54, 266, 518, 564, 659
DpnII	GATC	5 cut(s)	52, 264, 516, 562, 657
EaeI	YGGCCR	1 cut(s)	645
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
EciI	GGCGGA	1 cut(s)	48
Eco130I	CCWWGG	2 cut(s)	235, 725
Eco47I	GGWCC	2 cut(s)	20, 755
Eco81I	CCTNAGG	1 cut(s)	811
EcoO109I	RGGNCCY	2 cut(s)	20, 807
EcoT14I	CCWWGG	2 cut(s)	235, 725
EgeI	GGCGCC	1 cut(s)	606
EheI	GGCGCC	1 cut(s)	606
ErhI	CCWWGG	2 cut(s)	235, 725
FaeI	CATG	3 cut(s)	265, 382, 729
FaiI	YATR	7 cut(s)	106, 263, 311, 380, 447, 635, 727
FaqI	GGGAC	2 cut(s)	768, 808
FatI	CATG	3 cut(s)	261, 378, 725
FblI	GTMKAC	2 cut(s)	279, 540
Fnu4HI	GCNGC	6 cut(s)	220, 223, 510, 699, 780, 846
FokI	GGATG	2 cut(s)	257, 743
Fsp4HI	GCNGC	6 cut(s)	220, 223, 510, 699, 780, 846
FspBI	CTAG	3 cut(s)	476, 579, 684
GlaI	GCGC	1 cut(s)	606
GluI	GCNGC	6 cut(s)	220, 223, 510, 699, 780, 846
HaeII	RGCGCY	1 cut(s)	608
HaeIII	GGCC	2 cut(s)	647, 809
HapII	CCGG	8 cut(s)	204, 291, 346, 501, 596, 663, 669, 680
HgaI	GACGC	2 cut(s)	86, 214
HhaI	GCGC	1 cut(s)	607
Hin1I	GRCGYC	2 cut(s)	225, 605
Hin1II	CATG	3 cut(s)	265, 382, 729
Hin6I	GCGC	1 cut(s)	605
HinP1I	GCGC	1 cut(s)	605
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	4 cut(s)	184, 231, 504, 584
HpaII	CCGG	8 cut(s)	204, 291, 346, 501, 596, 663, 669, 680
HphI	GGTGA	4 cut(s)	148, 334, 652, 782
Hpy166II	GTNNAC	3 cut(s)	214, 280, 541
Hpy188I	TCNGA	8 cut(s)	36, 193, 230, 524, 615, 657, 695, 839
Hpy8I	GTNNAC	3 cut(s)	214, 280, 541
Hpy99I	CGWCG	2 cut(s)	80, 230
HpyAV	CCTTC	3 cut(s)	11, 343, 418
HpyCH4III	ACNGT	5 cut(s)	69, 160, 169, 458, 547
HpyCH4IV	ACGT	5 cut(s)	12, 153, 326, 591, 852
HpyCH4V	TGCA	3 cut(s)	285, 782, 845
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 776
HpyF3I	CTNAG	5 cut(s)	298, 340, 387, 803, 811
HpySE526I	ACGT	5 cut(s)	12, 153, 326, 591, 852
Hsp92I	GRCGYC	2 cut(s)	225, 605
Hsp92II	CATG	3 cut(s)	265, 382, 729
HspAI	GCGC	1 cut(s)	605
KasI	GGCGCC	1 cut(s)	604
Kzo9I	GATC	5 cut(s)	52, 264, 516, 562, 657
LmnI	GCTCC	5 cut(s)	85, 464, 695, 767, 821
Lsp1109I	GCAGC	1 cut(s)	766
LweI	GCATC	1 cut(s)	249
MaeI	CTAG	3 cut(s)	476, 579, 684
MaeII	ACGT	5 cut(s)	12, 153, 326, 591, 852
MaeIII	GTNAC	4 cut(s)	154, 176, 305, 322
MalI	GATC	5 cut(s)	54, 266, 518, 564, 659
MboI	GATC	5 cut(s)	52, 264, 516, 562, 657
MboII	GAAGA	4 cut(s)	62, 136, 259, 541
MflI	RGATCY	1 cut(s)	52
MlsI	TGGCCA	1 cut(s)	647
MluCI	AATT	2 cut(s)	451, 794
MluNI	TGGCCA	1 cut(s)	647
Mly113I	GGCGCC	1 cut(s)	605
MlyI	GAGTC	2 cut(s)	498, 578
MmeI	TCCRAC	2 cut(s)	208, 216
MnlI	CCTC	6 cut(s)	66, 76, 152, 455, 820, 836
Mox20I	TGGCCA	1 cut(s)	647
MscI	TGGCCA	1 cut(s)	647
MseI	TTAA	4 cut(s)	164, 450, 711, 856
Msp20I	TGGCCA	1 cut(s)	647
MspI	CCGG	8 cut(s)	204, 291, 346, 501, 596, 663, 669, 680
MspR9I	CCNGG	2 cut(s)	346, 680
MvnI	CGCG	2 cut(s)	245, 509
MwoI	GCNNNNNNNGC	2 cut(s)	119, 776
NarI	GGCGCC	1 cut(s)	605
NciI	CCSGG	2 cut(s)	346, 680
NcoI	CCATGG	1 cut(s)	725
NdeII	GATC	5 cut(s)	52, 264, 516, 562, 657
NlaIII	CATG	3 cut(s)	265, 382, 729
NlaIV	GGNNCC	7 cut(s)	466, 499, 606, 667, 697, 756, 817
NmeAIII	GCCGAG	1 cut(s)	148
NmuCI	GTSAC	3 cut(s)	154, 305, 322
PcsI	WCGNNNNNNNCGW	3 cut(s)	126, 528, 699
PfeI	GAWTC	2 cut(s)	184, 231
PflMI	CCANNNNNTGG	1 cut(s)	764
PinAI	ACCGGT	1 cut(s)	668
PkrI	GCNGC	6 cut(s)	221, 224, 511, 700, 781, 847
PleI	GAGTC	2 cut(s)	498, 578
PluTI	GGCGCC	1 cut(s)	608
PpsI	GAGTC	2 cut(s)	498, 578
PpuMI	RGGWCCY	1 cut(s)	20
Psp1406I	AACGTT	1 cut(s)	852
Psp5II	RGGWCCY	1 cut(s)	20
PspN4I	GGNNCC	7 cut(s)	466, 499, 606, 667, 697, 756, 817
PspPI	GGNCC	3 cut(s)	20, 755, 807
PspPPI	RGGWCCY	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	52
RsaI	GTAC	2 cut(s)	152, 639
RsaNI	GTAC	2 cut(s)	151, 638
SaqAI	TTAA	4 cut(s)	164, 450, 711, 856
SatI	GCNGC	6 cut(s)	220, 223, 510, 699, 780, 846
Sau3AI	GATC	5 cut(s)	52, 264, 516, 562, 657
Sau96I	GGNCC	3 cut(s)	20, 755, 807
SchI	GAGTC	2 cut(s)	498, 578
ScrFI	CCNGG	2 cut(s)	346, 680
SfaNI	GCATC	1 cut(s)	249
SfoI	GGCGCC	1 cut(s)	606
SinI	GGWCC	2 cut(s)	20, 755
Sse9I	AATT	2 cut(s)	451, 794
SspDI	GGCGCC	1 cut(s)	604
SspMI	CTAG	3 cut(s)	476, 579, 684
StyD4I	CCNGG	2 cut(s)	344, 678
StyI	CCWWGG	2 cut(s)	235, 725
TaaI	ACNGT	5 cut(s)	69, 160, 169, 458, 547
TaiI	ACGT	5 cut(s)	15, 156, 329, 594, 855
TaqI	TCGA	1 cut(s)	75
TasI	AATT	2 cut(s)	451, 794
TauI	GCSGC	4 cut(s)	222, 225, 512, 701
TfiI	GAWTC	2 cut(s)	184, 231
Tru1I	TTAA	4 cut(s)	164, 450, 711, 856
Tru9I	TTAA	4 cut(s)	164, 450, 711, 856
TscAI	CASTG	2 cut(s)	395, 743
TseFI	GTSAC	3 cut(s)	154, 305, 322
TseI	GCWGC	2 cut(s)	779, 845
Tsp45I	GTSAC	3 cut(s)	154, 305, 322
TspDTI	ATGAA	3 cut(s)	259, 751, 822
TspRI	CASTG	2 cut(s)	395, 743
Van91I	CCANNNNNTGG	1 cut(s)	764
VpaK11BI	GGWCC	2 cut(s)	20, 755
XmiI	GTMKAC	2 cut(s)	279, 540
XspI	CTAG	3 cut(s)	476, 579, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.