Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003978

Physical Location & Seq

Genomic Coordinates Reverse (-)

24375368 .. 24377206

Gene Structure 1839 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G60660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGCAAAAGACTTGGATGTGAACGAGAGTGGACCACCGGCGGCGAGAGACTACAAGGATCCGCCTCCCGCACCATTTTTCGACATGGAGGAGCTTAGGAAATGGCCGCTTTATAGAGCGGTCATAGCTGAGTTTGTAGCAACACTTCTGTTCCTCTACGTCTCAATCCTGACTGTAATCGGCTACAAAGCTCAAACCGATGCAACCGCCGGAGGAGTGGATTGTGGCGGCGTAGGAATATTGGGTATTGCGTGGGCTTTCGGTGGAATGATCTTTGTTCTCGTTTACTGTACCGCCGGTATCTCCGGTGGTCATATAAATCCGGCTGTGACGGTGGGACTATTCCTGGCTCGTAAAGTGTCATTGGTGCGGACAGTGTTATACATTGTGGCTCAGTGCCTTGGTGCCATCTGCGGTTGCGGTTTCGTCAAAGCATTCCAAAGTTCTTACTACACCAGATATGGAGGTGGAGCCAACGAGCTAGCCGATGGCTACAACAAAGGTACCGGACTCGGTGCCGAGATCATTGGAACTTTTGTCCTTGTATACACCGTCTTCTCGGCAACCGATCCCAAGCGAAATGCTCGTGACTCTCACGTGCCAGTTTTGGCTCCACTTCCCATTGGCTTTGCCGTCTTCATGGTTCATTTAGCCACCATTCCCATCACCGGAACCGGTATCAACCCGGCTCGTAGCTTTGGAGCTGCCGTTATTTACAACAACGAAAAGGCCTGGGACGACCAATGGATTTTTTGGGTTGGACCGATGATCGGAGCAGCAGCAGCAGCGTTTTACCATCAGTTTATTTTAAGAGCGGCTGCGATTAAAGCTCTTGGCTCATTTGGCTCCTTTGGCTCCTTTAGGAGCTTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006833 GO:0006855 GO:0007275 GO:0008150 GO:0009506 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009888 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0015250 GO:0015267 GO:0015318 GO:0015893 GO:0016020 GO:0016021 GO:0016049 GO:0021700 GO:0022622 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0033993 GO:0034220 GO:0040007 GO:0042044 GO:0042221 GO:0042493 GO:0042891 GO:0044425 GO:0044459 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0055044 GO:0055085 GO:0060560 GO:0071695 GO:0071944 GO:0080147 GO:0080170 GO:0090558 GO:0090627 GO:0097305 GO:0099402 GO:1901700 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

291

Amino Acids

30.95

Weight (kDa)

8.22

Isoelectric Point (pI)

29.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	31 - 266	2.1e-84	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37170 AT2G37170 AT2G37180 AT3G53420 AT3G53420 AT5G60660
fragaria_vesca	FvH4_6g15820 FvH4_6g15820 FvH4_6g15840 FvH4_6g15840 FvH4_6g15840
malus_domestica	MD04G1098300.v1.1 MD12G1119100.v1.1 MD12G1119200.v1.1
prunus_persica	Prupe.6G237000_v2.0.a1
pyrus_communis	pycom12g11780
rosa_chinensis	RchiOBHm_Chr3g0469531 RchiOBHm_Chr3g0469541
rosa_laevigata	RLG00000024341 RLG00000024342
rosa_multiflora	Rmu_sc0006483.1_g000001 Rmu_sc0009709.1_g000011
rosa_roxburghii	Rroxscaffold_6G00411780 Rroxscaffold_6G00411790
rosa_rugosa	Rorug03G0102300 Rorug03G0102400
rosa_samantha	Rh3AG151800 Rh3BG175300 Rh3BG175500 Rh3CG166600 Rh3DG200200
rosa_wichuraiana	Rw3G014300 Rw3G014320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	503
AccB1I	GGYRCC	3 cut(s)	404, 503, 515
AccBSI	CCGCTC	2 cut(s)	119, 815
AccI	GTMKAC	1 cut(s)	546
AclWI	GGATC	3 cut(s)	53, 66, 563
AcoI	YGGCCR	1 cut(s)	104
AcvI	CACGTG	1 cut(s)	598
AfaI	GTAC	2 cut(s)	292, 505
AfiI	CCNNNNNNNGG	2 cut(s)	668, 770
AgeI	ACCGGT	1 cut(s)	674
AjnI	CCWGG	2 cut(s)	345, 731
AluBI	AGCT	8 cut(s)	94, 128, 191, 481, 696, 704, 830, 867
AluI	AGCT	8 cut(s)	94, 128, 191, 481, 696, 704, 830, 867
Alw26I	GTCTC	2 cut(s)	42, 166
AlwI	GGATC	3 cut(s)	53, 66, 563
AoxI	GGCC	2 cut(s)	104, 729
ApeKI	GCWGC	6 cut(s)	704, 776, 779, 782, 785, 818
AsiGI	ACCGGT	1 cut(s)	674
Asp718I	GGTACC	1 cut(s)	503
AspS9I	GGNCC	2 cut(s)	32, 761
AsuC2I	CCSGG	1 cut(s)	686
AsuHPI	GGTGA	1 cut(s)	658
AsuNHI	GCTAGC	1 cut(s)	481
AvaII	GGWCC	2 cut(s)	32, 761
BaeI	ACNNNNGTAYC	2 cut(s)	487, 520
BamHI	GGATCC	1 cut(s)	58
BanI	GGYRCC	3 cut(s)	404, 503, 515
BarI	GAAGNNNNNNTAC	2 cut(s)	129, 161
BauI	CACGAG	1 cut(s)	585
BbrPI	CACGTG	1 cut(s)	598
BbsI	GAAGAC	2 cut(s)	547, 628
BbvI	GCAGC	6 cut(s)	691, 788, 791, 794, 797, 805
BccI	CCATC	4 cut(s)	416, 482, 671, 804
BceAI	ACGGC	2 cut(s)	617, 692
BciT130I	CCWGG	2 cut(s)	347, 733
BcnI	CCSGG	1 cut(s)	686
BcoDI	GTCTC	2 cut(s)	42, 166
BfaI	CTAG	1 cut(s)	482
Bme1390I	CCNGG	3 cut(s)	347, 686, 733
Bme18I	GGWCC	2 cut(s)	32, 761
BmgT120I	GGNCC	2 cut(s)	32, 761
BmiI	GGNNCC	9 cut(s)	60, 406, 472, 505, 517, 612, 673, 847, 856
BmrFI	CCNGG	3 cut(s)	347, 686, 733
BmsI	GCATC	1 cut(s)	190
BmtI	GCTAGC	1 cut(s)	485
BpiI	GAAGAC	2 cut(s)	547, 628
Bpu10I	CCTNAGC	1 cut(s)	95
BpuMI	CCSGG	1 cut(s)	686
BsaAI	YACGTR	1 cut(s)	598
BsaJI	CCNNGG	2 cut(s)	400, 732
BsaWI	WCCGGW	4 cut(s)	305, 506, 668, 674
BsaXI	ACNNNNNCTCC	2 cut(s)	693, 723
Bsc4I	CCNNNNNNNGG	2 cut(s)	668, 770
Bse118I	RCCGGY	3 cut(s)	37, 296, 674
Bse1I	ACTGG	1 cut(s)	602
BseBI	CCWGG	2 cut(s)	347, 733
BseDI	CCNNGG	2 cut(s)	400, 732
BseGI	GGATG	1 cut(s)	22
BseLI	CCNNNNNNNGG	2 cut(s)	668, 770
BseMII	CTCAG	2 cut(s)	120, 407
BseNI	ACTGG	1 cut(s)	602
BseRI	GAGGAG	2 cut(s)	104, 228
BseXI	GCAGC	6 cut(s)	691, 788, 791, 794, 797, 805
BshFI	GGCC	2 cut(s)	106, 731
BshNI	GGYRCC	3 cut(s)	404, 503, 515
BshTI	ACCGGT	1 cut(s)	674
BsiSI	CCGG	9 cut(s)	38, 210, 297, 306, 323, 507, 669, 675, 686
BslFI	GGGAC	2 cut(s)	351, 749
BslI	CCNNNNNNNGG	2 cut(s)	668, 770
BsmAI	GTCTC	2 cut(s)	42, 166
BsmBI	CGTCTC	1 cut(s)	166
BsmFI	GGGAC	2 cut(s)	351, 749
BsmI	GAATGC	1 cut(s)	434
BsnI	GGCC	2 cut(s)	106, 731
Bsp143I	GATC	5 cut(s)	58, 270, 522, 568, 768
BspANI	GGCC	2 cut(s)	106, 731
BspCNI	CTCAG	2 cut(s)	121, 406
BspLI	GGNNCC	9 cut(s)	60, 406, 472, 505, 517, 612, 673, 847, 856
BspOI	GCTAGC	1 cut(s)	485
BspPI	GGATC	3 cut(s)	53, 66, 563
BspT107I	GGYRCC	3 cut(s)	404, 503, 515
BsrBI	CCGCTC	2 cut(s)	119, 815
BsrFI	RCCGGY	3 cut(s)	37, 296, 674
BsrI	ACTGG	1 cut(s)	602
BssAI	RCCGGY	3 cut(s)	37, 296, 674
BssECI	CCNNGG	2 cut(s)	400, 732
BssMI	GATC	5 cut(s)	58, 270, 522, 568, 768
BssNAI	GTATAC	1 cut(s)	547
BssSI	CACGAG	1 cut(s)	585
BssT1I	CCWWGG	1 cut(s)	400
Bst1107I	GTATAC	1 cut(s)	547
Bst2BI	CACGAG	1 cut(s)	585
Bst2UI	CCWGG	2 cut(s)	347, 733
Bst4CI	ACNGT	5 cut(s)	175, 290, 334, 376, 553
BstBAI	YACGTR	1 cut(s)	598
BstC8I	GCNNGC	1 cut(s)	483
BstDEI	CTNAG	3 cut(s)	95, 129, 393
BstF5I	GGATG	1 cut(s)	22
BstKTI	GATC	5 cut(s)	61, 273, 525, 571, 771
BstMAI	GTCTC	2 cut(s)	42, 166
BstMBI	GATC	5 cut(s)	58, 270, 522, 568, 768
BstMWI	GCNNNNNNNGC	6 cut(s)	125, 782, 785, 827, 843, 852
BstNI	CCWGG	2 cut(s)	347, 733
BstSCI	CCNGG	3 cut(s)	345, 684, 731
BstV1I	GCAGC	6 cut(s)	691, 788, 791, 794, 797, 805
BstV2I	GAAGAC	2 cut(s)	547, 628
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
BstZ17I	GTATAC	1 cut(s)	547
BsuRI	GGCC	2 cut(s)	106, 731
BtsCI	GGATG	1 cut(s)	22
BtsIMutI	CAGTG	2 cut(s)	381, 401
Cac8I	GCNNGC	1 cut(s)	483
Cfr10I	RCCGGY	3 cut(s)	37, 296, 674
Cfr13I	GGNCC	2 cut(s)	32, 761
Csp6I	GTAC	2 cut(s)	291, 504
CspAI	ACCGGT	1 cut(s)	674
CviAII	CATG	2 cut(s)	85, 640
CviQI	GTAC	2 cut(s)	291, 504
DdeI	CTNAG	3 cut(s)	95, 129, 393
DpnI	GATC	5 cut(s)	60, 272, 524, 570, 770
DpnII	GATC	5 cut(s)	58, 270, 522, 568, 768
EaeI	YGGCCR	1 cut(s)	104
EciI	GGCGGA	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	400
Eco147I	AGGCCT	1 cut(s)	731
Eco47I	GGWCC	2 cut(s)	32, 761
Eco72I	CACGTG	1 cut(s)	598
EcoRII	CCWGG	2 cut(s)	345, 731
EcoT14I	CCWWGG	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	400
Esp3I	CGTCTC	1 cut(s)	166
FaeI	CATG	2 cut(s)	88, 643
FaiI	YATR	9 cut(s)	86, 114, 125, 315, 317, 382, 462, 547, 641
FaqI	GGGAC	2 cut(s)	351, 749
FatI	CATG	2 cut(s)	84, 639
FauI	CCCGC	1 cut(s)	76
FblI	GTMKAC	1 cut(s)	546
FokI	GGATG	1 cut(s)	29
FspBI	CTAG	1 cut(s)	482
HaeIII	GGCC	2 cut(s)	106, 731
HapII	CCGG	9 cut(s)	38, 210, 297, 306, 323, 507, 669, 675, 686
Hin1II	CATG	2 cut(s)	88, 643
HinfI	GANTC	2 cut(s)	510, 590
HpaII	CCGG	9 cut(s)	38, 210, 297, 306, 323, 507, 669, 675, 686
HphI	GGTGA	1 cut(s)	658
Hpy166II	GTNNAC	4 cut(s)	22, 32, 286, 547
Hpy188I	TCNGA	1 cut(s)	773
Hpy188III	TCNNGA	2 cut(s)	169, 587
Hpy8I	GTNNAC	4 cut(s)	22, 32, 286, 547
HpyCH4III	ACNGT	5 cut(s)	175, 290, 334, 376, 553
HpyCH4IV	ACGT	2 cut(s)	159, 597
HpyCH4V	TGCA	1 cut(s)	203
HpyF10VI	GCNNNNNNNGC	6 cut(s)	125, 782, 785, 827, 843, 852
HpyF3I	CTNAG	3 cut(s)	95, 129, 393
HpySE526I	ACGT	2 cut(s)	159, 597
Hsp92II	CATG	2 cut(s)	88, 643
KpnI	GGTACC	1 cut(s)	507
Kzo9I	GATC	5 cut(s)	58, 270, 522, 568, 768
LmnI	GCTCC	8 cut(s)	91, 470, 616, 701, 773, 851, 860, 864
Lsp1109I	GCAGC	6 cut(s)	691, 788, 791, 794, 797, 805
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	1 cut(s)	482
MaeII	ACGT	2 cut(s)	159, 597
MaeIII	GTNAC	2 cut(s)	328, 587
MalI	GATC	5 cut(s)	60, 272, 524, 570, 770
MbiI	CCGCTC	2 cut(s)	119, 815
MboI	GATC	5 cut(s)	58, 270, 522, 568, 768
MboII	GAAGA	2 cut(s)	547, 628
MflI	RGATCY	1 cut(s)	58
MlyI	GAGTC	2 cut(s)	504, 584
MmeI	TCCRAC	1 cut(s)	739
MnlI	CCTC	5 cut(s)	75, 82, 164, 206, 458
MseI	TTAA	3 cut(s)	809, 825, 874
MspI	CCGG	9 cut(s)	38, 210, 297, 306, 323, 507, 669, 675, 686
MspR9I	CCNGG	3 cut(s)	347, 686, 733
Mva1269I	GAATGC	1 cut(s)	434
MvaI	CCWGG	2 cut(s)	347, 733
MwoI	GCNNNNNNNGC	6 cut(s)	125, 782, 785, 827, 843, 852
NciI	CCSGG	1 cut(s)	686
NdeII	GATC	5 cut(s)	58, 270, 522, 568, 768
NheI	GCTAGC	1 cut(s)	481
NlaIII	CATG	2 cut(s)	88, 643
NlaIV	GGNNCC	9 cut(s)	60, 406, 472, 505, 517, 612, 673, 847, 856
NmeAIII	GCCGAG	2 cut(s)	539, 544
NmuCI	GTSAC	2 cut(s)	328, 587
PceI	AGGCCT	1 cut(s)	731
PcsI	WCGNNNNNNNCGW	1 cut(s)	483
PctI	GAATGC	1 cut(s)	434
PinAI	ACCGGT	1 cut(s)	674
PleI	GAGTC	2 cut(s)	504, 584
PmaCI	CACGTG	1 cut(s)	598
PmlI	CACGTG	1 cut(s)	598
PpsI	GAGTC	2 cut(s)	504, 584
Ppu21I	YACGTR	1 cut(s)	598
Psp6I	CCWGG	2 cut(s)	345, 731
PspCI	CACGTG	1 cut(s)	598
PspGI	CCWGG	2 cut(s)	345, 731
PspN4I	GGNNCC	9 cut(s)	60, 406, 472, 505, 517, 612, 673, 847, 856
PspPI	GGNCC	2 cut(s)	32, 761
PsuI	RGATCY	1 cut(s)	58
RsaI	GTAC	2 cut(s)	292, 505
RsaNI	GTAC	2 cut(s)	291, 504
SaqAI	TTAA	3 cut(s)	809, 825, 874
Sau3AI	GATC	5 cut(s)	58, 270, 522, 568, 768
Sau96I	GGNCC	2 cut(s)	32, 761
SchI	GAGTC	2 cut(s)	504, 584
ScrFI	CCNGG	3 cut(s)	347, 686, 733
SfaNI	GCATC	1 cut(s)	190
SgrAI	CRCCGGYG	1 cut(s)	37
SinI	GGWCC	2 cut(s)	32, 761
SseBI	AGGCCT	1 cut(s)	731
SspI	AATATT	1 cut(s)	240
SspMI	CTAG	1 cut(s)	482
StuI	AGGCCT	1 cut(s)	731
StyD4I	CCNGG	3 cut(s)	345, 684, 731
StyI	CCWWGG	1 cut(s)	400
TaaI	ACNGT	5 cut(s)	175, 290, 334, 376, 553
TaiI	ACGT	2 cut(s)	162, 600
TaqI	TCGA	1 cut(s)	81
TaqII	GACCGA	1 cut(s)	778
TauI	GCSGC	4 cut(s)	44, 109, 231, 818
Tru1I	TTAA	3 cut(s)	809, 825, 874
Tru9I	TTAA	3 cut(s)	809, 825, 874
TscAI	CASTG	2 cut(s)	381, 401
TseFI	GTSAC	2 cut(s)	328, 587
TseI	GCWGC	6 cut(s)	704, 776, 779, 782, 785, 818
Tsp45I	GTSAC	2 cut(s)	328, 587
TspDTI	ATGAA	2 cut(s)	628, 635
TspRI	CASTG	2 cut(s)	381, 401
VpaK11BI	GGWCC	2 cut(s)	32, 761
XmiI	GTMKAC	1 cut(s)	546
XspI	CTAG	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.