AT2G38500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011169
Physical Location & Seq
Reverse (-)
16117395 .. 16119187
1793 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G38500.1

Sequence Viewer

Length: 1071 bp
ATGGCTCTGATGCGAACCAGGAGCCAGTTGAACGTATCTTCATTGACTCCACCACCTCCTCCTCCGTCTCCGATCCCTAGAGCCAGAGGCTCTCGTTGCGCTGCCAGCGAGATTCTCACCGAGATCATTGAGCGATCGATTCAGGTTCCTGAGCTCACGCTTCCGGAATCTCATTCTGGAGGTGAATCTTGCGGCTCACGTCATCTGATCCCGGCGGAGATTGATTTTAGGTTATTGGCGTCGAGGAGAGAAGGTTCGGTGGATCGGTTGGTGCGATCGGCGAGAGAGTTTGGGGCGTTTCGTGTGAGTTATCATGGGATATCTGGGGAGGAGCTGAGGTCTCTTGTGAGGGAATCGGGTCGGGTTTTCGGAGTTTTGGAGGGAAGAGACACCGGGTTTCACCGGAGTGTTGTCGGAAACAGAGACGAGATCGTGTGGGTACGGTCGTGGAAGGAGAGGATGGAATGGGCGCGCGAGTATATCGGACCGGAAAGATACCGCTGCTTCAGCCAAGAAATGGAGAATGTAGCTGATAAACTTGAAGATATAGCGAGGAAACTAGGGCAAATAATGGTAGAGAACTCAAGAAGACCAAATGATAAGAAGATACAAAGAGGAGAATCTGTGCTTAGCGTTTACAGGTACAATCATGAAAATGTAACTGAGCAAAGCCCTCCTTTGCCCAAAGAGAGGACCGAAGAAATGCTTCATTATACACTCAGCCTTCACCTTCCGGCTAAGAACTGCGAGTTCCGCGTCAACTCAGGGAAAGGTCCACTTTCTTTCCATGCTGATCCCGACACTATCCTTGTCACTTTTGGTCGTCAGCTTGAGGAATGGAGTTTAGGAGAATTCAAATGTCGTCAAGGAGAAATCATCTATCATCCTGATGCATATGGCTCGCCCACTTCCTTCTCCGTAGAGCTCAAGTGCATGTCTCTTTTCTTATCACACACTTCTATCGCAACAACCTCCAAAACATTCTCTTTAACCCATCAGATTTTCACTGCTTTCCTCCTACTTTTTTTCTTCCAATGTTTTTGGATTTATGGATCACGAATGGCCGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

356

Amino Acids

40.63

Weight (kDa)

8.15

Isoelectric Point (pI)

47.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011169)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38500
fragaria_vesca FvH4_6g10130
malus_domestica MD12G1185800.v1.1
prunus_persica Prupe.6G291400_v2.0.a1
pyrus_communis pycom12g17450
rosa_chinensis RchiOBHm_Chr3g0460831
rosa_laevigata RLG00000018120 RLG00000024976
rosa_multiflora Rmu_sc0007678.1_g000011
rosa_roxburghii Rroxscaffold_5G00381390 Rroxscaffold_6G00419180
rosa_rugosa Rorug02G0156100 Rorug03G0046800
rosa_samantha Rh1AG194200 Rh3AG103900 Rh3BG107500 Rh3CG109400 Rh3DG109300 Rh7DG284200
rosa_wichuraiana Rw3G008840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 517
AccII CGCG 3 cut(s) 472, 474, 756
AccIII TCCGGA 1 cut(s) 163
AciI CCGC 5 cut(s) 192, 215, 499, 754, 1065
AclWI GGATC 5 cut(s) 67, 202, 270, 788, 1060
AcoI YGGCCR 1 cut(s) 1062
AcsI RAATTY 1 cut(s) 851
AcuI CTGAAG 1 cut(s) 490
AcyI GRCGYC 1 cut(s) 239
AfaI GTAC 2 cut(s) 441, 644
AfiI CCNNNNNNNGG 2 cut(s) 517, 690
AgsI TTSAA 3 cut(s) 31, 542, 856
AjiI CACGTC 1 cut(s) 200
AjnI CCWGG 1 cut(s) 17
AleI CACNNNNGTG 1 cut(s) 405
AloI GAACNNNNNNTCC 2 cut(s) 238, 270
AluBI AGCT 5 cut(s) 154, 334, 530, 829, 925
AluI AGCT 5 cut(s) 154, 334, 530, 829, 925
Alw21I GWGCWC 2 cut(s) 156, 927
Alw26I GTCTC 5 cut(s) 72, 345, 381, 417, 942
AlwI GGATC 5 cut(s) 67, 202, 270, 788, 1060
Aor13HI TCCGGA 1 cut(s) 163
AoxI GGCC 1 cut(s) 1062
ApeKI GCWGC 2 cut(s) 101, 501
ApoI RAATTY 1 cut(s) 851
Asp700I GAANNNNTTC 1 cut(s) 705
AspLEI GCGC 3 cut(s) 101, 472, 474
AspS9I GGNCC 3 cut(s) 485, 693, 773
AsuC2I CCSGG 2 cut(s) 212, 394
AsuHPI GGTGA 4 cut(s) 109, 194, 392, 719
AvaII GGWCC 3 cut(s) 485, 693, 773
BaeI ACNNNNGTAYC 2 cut(s) 431, 464
BanII GRGCYC 2 cut(s) 156, 927
BbsI GAAGAC 1 cut(s) 595
Bbv12I GWGCWC 2 cut(s) 156, 927
BbvCI CCTCAGC 1 cut(s) 335
BbvI GCAGC 2 cut(s) 88, 488
BccI CCATC 2 cut(s) 454, 1002
BcgI CGANNNNNNTGC 2 cut(s) 882, 916
BciT130I CCWGG 1 cut(s) 19
BcnI CCSGG 2 cut(s) 212, 394
BcoDI GTCTC 5 cut(s) 72, 345, 381, 417, 942
BfaI CTAG 2 cut(s) 78, 560
BisI GCNGC 4 cut(s) 102, 193, 502, 1065
BlpI GCTNAGC 1 cut(s) 629
BlsI GCNGC 4 cut(s) 103, 194, 503, 1066
Bme1390I CCNGG 3 cut(s) 19, 212, 394
Bme18I GGWCC 3 cut(s) 485, 693, 773
BmgBI CACGTC 1 cut(s) 200
BmgT120I GGNCC 3 cut(s) 485, 693, 773
BmiI GGNNCC 2 cut(s) 23, 147
BmrFI CCNGG 3 cut(s) 19, 212, 394
BmsI GCATC 1 cut(s) 880
BpiI GAAGAC 1 cut(s) 595
BpmI CTGGAG 1 cut(s) 198
Bpu10I CCTNAGC 2 cut(s) 150, 335
Bpu1102I GCTNAGC 1 cut(s) 629
BpuEI CTTGAG 3 cut(s) 568, 851, 911
BpuMI CCSGG 2 cut(s) 212, 394
Bsa29I ATCGAT 1 cut(s) 137
BsaHI GRCGYC 1 cut(s) 239
BsaI GGTCTC 1 cut(s) 345
BsaWI WCCGGW 3 cut(s) 163, 402, 487
BsaXI ACNNNNNCTCC 6 cut(s) 238, 268, 323, 353, 609, 639
Bsc4I CCNNNNNNNGG 2 cut(s) 517, 690
Bse1I ACTGG 1 cut(s) 25
BseAI TCCGGA 1 cut(s) 163
BseBI CCWGG 1 cut(s) 19
BseCI ATCGAT 1 cut(s) 137
BseGI GGATG 2 cut(s) 465, 883
BseLI CCNNNNNNNGG 2 cut(s) 517, 690
BseMII CTCAG 5 cut(s) 141, 326, 654, 733, 777
BseNI ACTGG 1 cut(s) 25
BsePI GCGCGC 1 cut(s) 470
BseRI GAGGAG 5 cut(s) 48, 51, 259, 344, 630
BseXI GCAGC 2 cut(s) 88, 488
Bsh1236I CGCG 3 cut(s) 472, 474, 756
Bsh1285I CGRYCG 3 cut(s) 137, 278, 446
BshFI GGCC 1 cut(s) 1064
BshVI ATCGAT 1 cut(s) 137
BsiEI CGRYCG 3 cut(s) 137, 278, 446
BsiHKAI GWGCWC 2 cut(s) 156, 927
BsiSI CCGG 6 cut(s) 164, 212, 393, 403, 488, 734
BslI CCNNNNNNNGG 2 cut(s) 517, 690
BsmAI GTCTC 5 cut(s) 72, 345, 381, 417, 942
BsmBI CGTCTC 2 cut(s) 72, 417
BsnI GGCC 1 cut(s) 1064
Bso31I GGTCTC 1 cut(s) 345
Bsp1286I GDGCHC 2 cut(s) 156, 927
Bsp13I TCCGGA 1 cut(s) 163
Bsp143I GATC 9 cut(s) 72, 123, 134, 207, 262, 275, 429, 793, 1052
Bsp1720I GCTNAGC 1 cut(s) 629
BspACI CCGC 5 cut(s) 192, 215, 499, 754, 1065
BspANI GGCC 1 cut(s) 1064
BspCNI CTCAG 5 cut(s) 142, 327, 655, 732, 776
BspDI ATCGAT 1 cut(s) 137
BspEI TCCGGA 1 cut(s) 163
BspFNI CGCG 3 cut(s) 472, 474, 756
BspHI TCATGA 1 cut(s) 649
BspLI GGNNCC 2 cut(s) 23, 147
BspPI GGATC 5 cut(s) 67, 202, 270, 788, 1060
BspTNI GGTCTC 1 cut(s) 345
BsrI ACTGG 1 cut(s) 25
BssHII GCGCGC 1 cut(s) 470
BssMI GATC 9 cut(s) 72, 123, 134, 207, 262, 275, 429, 793, 1052
BssNI GRCGYC 1 cut(s) 239
Bst2UI CCWGG 1 cut(s) 19
Bst4CI ACNGT 1 cut(s) 444
Bst6I CTCTTC 1 cut(s) 379
BstACI GRCGYC 1 cut(s) 239
BstC8I GCNNGC 3 cut(s) 106, 472, 902
BstDEI CTNAG 8 cut(s) 150, 335, 629, 663, 719, 738, 763, 1068
BstF5I GGATG 2 cut(s) 465, 883
BstFNI CGCG 3 cut(s) 472, 474, 756
BstHHI GCGC 3 cut(s) 101, 472, 474
BstKTI GATC 9 cut(s) 75, 126, 137, 210, 265, 278, 432, 796, 1055
BstMAI GTCTC 5 cut(s) 72, 345, 381, 417, 942
BstMBI GATC 9 cut(s) 72, 123, 134, 207, 262, 275, 429, 793, 1052
BstMCI CGRYCG 3 cut(s) 137, 278, 446
BstMWI GCNNNNNNNGC 4 cut(s) 96, 105, 507, 753
BstNI CCWGG 1 cut(s) 19
BstNSI RCATGY 1 cut(s) 937
BstSCI CCNGG 3 cut(s) 17, 210, 392
BstUI CGCG 3 cut(s) 472, 474, 756
BstV1I GCAGC 2 cut(s) 88, 488
BstV2I GAAGAC 1 cut(s) 595
Bsu15I ATCGAT 1 cut(s) 137
BsuRI GGCC 1 cut(s) 1064
BsuTUI ATCGAT 1 cut(s) 137
BtrI CACGTC 1 cut(s) 200
BtsCI GGATG 2 cut(s) 465, 883
BtsI GCAGTG 1 cut(s) 1005
BtsIMutI CAGTG 1 cut(s) 1005
Cac8I GCNNGC 3 cut(s) 106, 472, 902
CciI TCATGA 1 cut(s) 649
CfoI GCGC 3 cut(s) 101, 472, 474
Cfr13I GGNCC 3 cut(s) 485, 693, 773
ClaI ATCGAT 1 cut(s) 137
CpoI CGGWCCG 1 cut(s) 485
CseI GACGC 2 cut(s) 228, 745
Csp6I GTAC 2 cut(s) 440, 643
CspI CGGWCCG 1 cut(s) 485
CviAII CATG 4 cut(s) 314, 650, 788, 934
CviQI GTAC 2 cut(s) 440, 643
DdeI CTNAG 8 cut(s) 150, 335, 629, 663, 719, 738, 763, 1068
DpnI GATC 9 cut(s) 74, 125, 136, 209, 264, 277, 431, 795, 1054
DpnII GATC 9 cut(s) 72, 123, 134, 207, 262, 275, 429, 793, 1052
EaeI YGGCCR 1 cut(s) 1062
Eam1104I CTCTTC 1 cut(s) 379
EarI CTCTTC 1 cut(s) 379
EciI GGCGGA 1 cut(s) 230
Ecl136II GAGCTC 2 cut(s) 154, 925
Eco24I GRGCYC 2 cut(s) 156, 927
Eco31I GGTCTC 1 cut(s) 345
Eco32I GATATC 1 cut(s) 321
Eco47I GGWCC 3 cut(s) 485, 693, 773
Eco53kI GAGCTC 2 cut(s) 154, 925
Eco57I CTGAAG 1 cut(s) 490
EcoICRI GAGCTC 2 cut(s) 154, 925
EcoRI GAATTC 1 cut(s) 851
EcoRII CCWGG 1 cut(s) 17
EcoRV GATATC 1 cut(s) 321
EcoT22I ATGCAT 1 cut(s) 895
EcoT38I GRGCYC 2 cut(s) 156, 927
Esp3I CGTCTC 2 cut(s) 72, 417
FaeI CATG 4 cut(s) 317, 653, 791, 937
FalI AAGNNNNNCTT 6 cut(s) 661, 693, 690, 722, 762, 794
FatI CATG 4 cut(s) 313, 649, 787, 933
FauNDI CATATG 1 cut(s) 895
Fnu4HI GCNGC 4 cut(s) 102, 193, 502, 1065
FokI GGATG 2 cut(s) 472, 870
FriOI GRGCYC 2 cut(s) 156, 927
Fsp4HI GCNGC 4 cut(s) 102, 193, 502, 1065
FspBI CTAG 2 cut(s) 78, 560
GlaI GCGC 3 cut(s) 100, 471, 473
GluI GCNGC 4 cut(s) 102, 193, 502, 1065
GsuI CTGGAG 1 cut(s) 198
HaeIII GGCC 1 cut(s) 1064
HapII CCGG 6 cut(s) 164, 212, 393, 403, 488, 734
HgaI GACGC 2 cut(s) 228, 745
HhaI GCGC 3 cut(s) 101, 472, 474
Hin1I GRCGYC 1 cut(s) 239
Hin1II CATG 4 cut(s) 317, 653, 791, 937
Hin6I GCGC 3 cut(s) 99, 470, 472
HinP1I GCGC 3 cut(s) 99, 470, 472
HincII GTYRAC 1 cut(s) 760
HindII GTYRAC 1 cut(s) 760
HinfI GANTC 7 cut(s) 46, 112, 139, 167, 185, 353, 620
HpaII CCGG 6 cut(s) 164, 212, 393, 403, 488, 734
HphI GGTGA 4 cut(s) 109, 194, 392, 719
Hpy166II GTNNAC 3 cut(s) 637, 760, 776
Hpy188I TCNGA 7 cut(s) 9, 72, 207, 371, 416, 485, 999
Hpy188III TCNNGA 8 cut(s) 149, 164, 177, 585, 650, 797, 887, 1056
Hpy8I GTNNAC 3 cut(s) 637, 760, 776
Hpy99I CGWCG 1 cut(s) 244
HpyAV CCTTC 5 cut(s) 245, 445, 734, 740, 922
HpyCH4III ACNGT 1 cut(s) 444
HpyCH4IV ACGT 2 cut(s) 33, 199
HpyCH4V TGCA 2 cut(s) 893, 933
HpyF10VI GCNNNNNNNGC 4 cut(s) 96, 105, 507, 753
HpyF3I CTNAG 8 cut(s) 150, 335, 629, 663, 719, 738, 763, 1068
HpySE526I ACGT 2 cut(s) 33, 199
Hsp92I GRCGYC 1 cut(s) 239
Hsp92II CATG 4 cut(s) 317, 653, 791, 937
HspAI GCGC 3 cut(s) 99, 470, 472
Kpn2I TCCGGA 1 cut(s) 163
Kzo9I GATC 9 cut(s) 72, 123, 134, 207, 262, 275, 429, 793, 1052
LmnI GCTCC 2 cut(s) 21, 331
Lsp1109I GCAGC 2 cut(s) 88, 488
LweI GCATC 1 cut(s) 880
MaeI CTAG 2 cut(s) 78, 560
MaeII ACGT 2 cut(s) 33, 199
MaeIII GTNAC 2 cut(s) 658, 811
MalI GATC 9 cut(s) 74, 125, 136, 209, 264, 277, 431, 795, 1054
MboI GATC 9 cut(s) 72, 123, 134, 207, 262, 275, 429, 793, 1052
MboII GAAGA 7 cut(s) 30, 396, 554, 600, 616, 710, 1021
MhlI GDGCHC 2 cut(s) 156, 927
MluCI AATT 1 cut(s) 851
MlyI GAGTC 1 cut(s) 40
MmeI TCCRAC 1 cut(s) 394
Mph1103I ATGCAT 1 cut(s) 895
MroI TCCGGA 1 cut(s) 163
MroXI GAANNNNTTC 1 cut(s) 705
MseI TTAA 1 cut(s) 989
MslI CAYNNNNRTG 3 cut(s) 405, 654, 888
MspA1I CMGCKG 1 cut(s) 501
MspI CCGG 6 cut(s) 164, 212, 393, 403, 488, 734
MspR9I CCNGG 3 cut(s) 19, 212, 394
MvaI CCWGG 1 cut(s) 19
MvnI CGCG 3 cut(s) 472, 474, 756
MwoI GCNNNNNNNGC 4 cut(s) 96, 105, 507, 753
NciI CCSGG 2 cut(s) 212, 394
NdeI CATATG 1 cut(s) 895
NdeII GATC 9 cut(s) 72, 123, 134, 207, 262, 275, 429, 793, 1052
NlaIII CATG 4 cut(s) 317, 653, 791, 937
NlaIV GGNNCC 2 cut(s) 23, 147
NmuCI GTSAC 1 cut(s) 811
NsiI ATGCAT 1 cut(s) 895
NspI RCATGY 1 cut(s) 937
OliI CACNNNNGTG 1 cut(s) 405
PagI TCATGA 1 cut(s) 649
PauI GCGCGC 1 cut(s) 470
PcsI WCGNNNNNNNCGW 1 cut(s) 271
PdmI GAANNNNTTC 1 cut(s) 705
PfeI GAWTC 6 cut(s) 112, 139, 167, 185, 353, 620
PflMI CCANNNNNTGG 1 cut(s) 517
PkrI GCNGC 4 cut(s) 103, 194, 503, 1066
Ple19I CGATCG 2 cut(s) 137, 278
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
Psp124BI GAGCTC 2 cut(s) 156, 927
Psp6I CCWGG 1 cut(s) 17
PspGI CCWGG 1 cut(s) 17
PspN4I GGNNCC 2 cut(s) 23, 147
PspPI GGNCC 3 cut(s) 485, 693, 773
PteI GCGCGC 1 cut(s) 470
PvuI CGATCG 2 cut(s) 137, 278
RsaI GTAC 2 cut(s) 441, 644
RsaNI GTAC 2 cut(s) 440, 643
RseI CAYNNNNRTG 3 cut(s) 405, 654, 888
Rsr2I CGGWCCG 1 cut(s) 485
RsrII CGGWCCG 1 cut(s) 485
SacI GAGCTC 2 cut(s) 156, 927
SaqAI TTAA 1 cut(s) 989
SatI GCNGC 4 cut(s) 102, 193, 502, 1065
Sau3AI GATC 9 cut(s) 72, 123, 134, 207, 262, 275, 429, 793, 1052
Sau96I GGNCC 3 cut(s) 485, 693, 773
SchI GAGTC 1 cut(s) 40
ScrFI CCNGG 3 cut(s) 19, 212, 394
SduI GDGCHC 2 cut(s) 156, 927
SfaNI GCATC 1 cut(s) 880
SinI GGWCC 3 cut(s) 485, 693, 773
SmiMI CAYNNNNRTG 3 cut(s) 405, 654, 888
SmlI CTYRAG 3 cut(s) 583, 830, 926
SmoI CTYRAG 3 cut(s) 583, 830, 926
Sse9I AATT 1 cut(s) 851
SsiI CCGC 5 cut(s) 192, 215, 499, 754, 1065
SspMI CTAG 2 cut(s) 78, 560
SstI GAGCTC 2 cut(s) 156, 927
StyD4I CCNGG 3 cut(s) 17, 210, 392
TaaI ACNGT 1 cut(s) 444
TaiI ACGT 2 cut(s) 36, 202
TaqI TCGA 2 cut(s) 137, 242
TaqII GACCGA 1 cut(s) 710
TasI AATT 1 cut(s) 851
TauI GCSGC 2 cut(s) 195, 1067
TfiI GAWTC 6 cut(s) 112, 139, 167, 185, 353, 620
Tru1I TTAA 1 cut(s) 989
Tru9I TTAA 1 cut(s) 989
TscAI CASTG 1 cut(s) 1012
TseFI GTSAC 1 cut(s) 811
TseI GCWGC 2 cut(s) 101, 501
Tsp45I GTSAC 1 cut(s) 811
TspDTI ATGAA 3 cut(s) 30, 666, 698
TspGWI ACGGA 2 cut(s) 54, 907
TspRI CASTG 1 cut(s) 1012
Van91I CCANNNNNTGG 1 cut(s) 517
VpaK11BI GGWCC 3 cut(s) 485, 693, 773
XapI RAATTY 1 cut(s) 851
XceI RCATGY 1 cut(s) 937
XmnI GAANNNNTTC 1 cut(s) 705
XspI CTAG 2 cut(s) 78, 560
Zsp2I ATGCAT 1 cut(s) 895
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.