Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0011169

Physical Location & Seq

Genomic Coordinates Forward (+)

30986572 .. 30987018

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG284200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGACGTCGGAGGAAGAAGAGGTGCTCCGAGCCAGCGTCAGAAAGCACGGCACCGGAAAGTGGAAGGACATCCAGAAAGACCCCAAGTTCAACCCCTTCGTCTCCGAGCCGACGTCAGAAACTCCTGCCACCGTTCAACGCCGAAGCTCATCAACCTCAGCTCCTCCTTGACTGTCTTTCCTAAAAAAGTTGAGTTTCGCGGGCGGAGCTTCTGCAACTTCCGGCATCCTACTGCTCTCACTCTCAGAGCTTCTTCTATTGGCACCGCCGTAGCTGTGACCACCGCGCCTTTCTTCAAGAAGACATATCCTTTTGAGCGAACTGACTTAGACTCGAAATGGTGCTCCTCGTCGGACATGGGTGGGCTCCGATCTCTGAGAGAAAGAAAGGGAAATGGAATTGATCAAAGGAGGAGAGATGAGAAGCGTCAGAGAAAGGGATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004556 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016160 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046352 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase

Protein Analysis

148

Amino Acids

16.9

Weight (kDa)

11.49

Isoelectric Point (pI)

62.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38500
fragaria_vesca	FvH4_6g10130
malus_domestica	MD12G1185800.v1.1
prunus_persica	Prupe.6G291400_v2.0.a1
pyrus_communis	pycom12g17450
rosa_chinensis	RchiOBHm_Chr3g0460831
rosa_laevigata	RLG00000018120 RLG00000024976
rosa_multiflora	Rmu_sc0007678.1_g000011
rosa_roxburghii	Rroxscaffold_5G00381390 Rroxscaffold_6G00419180
rosa_rugosa	Rorug02G0156100 Rorug03G0046800
rosa_samantha	Rh1AG194200 Rh3AG103900 Rh3BG107500 Rh3CG109400 Rh3DG109300 Rh7DG284200
rosa_wichuraiana	Rw3G008840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	9, 117
AccB1I	GGYRCC	2 cut(s)	51, 263
AccII	CGCG	2 cut(s)	201, 287
AciI	CCGC	4 cut(s)	201, 205, 267, 285
AcyI	GRCGYC	2 cut(s)	6, 114
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	3 cut(s)	92, 138, 298
AluBI	AGCT	5 cut(s)	148, 162, 210, 251, 275
AluI	AGCT	5 cut(s)	148, 162, 210, 251, 275
Alw21I	GWGCWC	2 cut(s)	28, 347
Alw26I	GTCTC	1 cut(s)	107
AspLEI	GCGC	1 cut(s)	289
BanI	GGYRCC	2 cut(s)	51, 263
BanII	GRGCYC	1 cut(s)	369
BbsI	GAAGAC	1 cut(s)	308
Bbv12I	GWGCWC	2 cut(s)	28, 347
BbvCI	CCTCAGC	1 cut(s)	158
BceAI	ACGGC	2 cut(s)	65, 254
BclI	TGATCA	1 cut(s)	403
BcoDI	GTCTC	1 cut(s)	107
BmiI	GGNNCC	3 cut(s)	53, 265, 368
BmsI	GCATC	1 cut(s)	235
BpiI	GAAGAC	1 cut(s)	308
Bpu10I	CCTNAGC	1 cut(s)	158
BsaHI	GRCGYC	2 cut(s)	6, 114
BsaWI	WCCGGW	1 cut(s)	54
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
BseGI	GGATG	2 cut(s)	70, 226
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMII	CTCAG	3 cut(s)	172, 259, 368
BseRI	GAGGAG	3 cut(s)	154, 337, 427
Bsh1236I	CGCG	2 cut(s)	201, 287
BshNI	GGYRCC	2 cut(s)	51, 263
BsiHKAI	GWGCWC	2 cut(s)	28, 347
BsiSI	CCGG	2 cut(s)	55, 223
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	1 cut(s)	107
BsmBI	CGTCTC	1 cut(s)	107
Bsp1286I	GDGCHC	3 cut(s)	28, 347, 369
Bsp143I	GATC	2 cut(s)	371, 403
BspACI	CCGC	4 cut(s)	201, 205, 267, 285
BspCNI	CTCAG	3 cut(s)	171, 258, 369
BspFNI	CGCG	2 cut(s)	201, 287
BspLI	GGNNCC	3 cut(s)	53, 265, 368
BspT107I	GGYRCC	2 cut(s)	51, 263
BssMI	GATC	2 cut(s)	371, 403
BssNI	GRCGYC	2 cut(s)	6, 114
Bst4CI	ACNGT	2 cut(s)	134, 175
Bst6I	CTCTTC	1 cut(s)	13
BstACI	GRCGYC	2 cut(s)	6, 114
BstC8I	GCNNGC	2 cut(s)	35, 203
BstDEI	CTNAG	4 cut(s)	158, 245, 328, 377
BstF5I	GGATG	2 cut(s)	70, 226
BstFNI	CGCG	2 cut(s)	201, 287
BstHHI	GCGC	1 cut(s)	289
BstKTI	GATC	2 cut(s)	374, 406
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	2 cut(s)	371, 403
BstMWI	GCNNNNNNNGC	1 cut(s)	207
BstUI	CGCG	2 cut(s)	201, 287
BstV2I	GAAGAC	1 cut(s)	308
BtsCI	GGATG	2 cut(s)	70, 226
Cac8I	GCNNGC	2 cut(s)	35, 203
CfoI	GCGC	1 cut(s)	289
CseI	GACGC	2 cut(s)	26, 416
CviAII	CATG	1 cut(s)	358
CviJI	RGCY	8 cut(s)	33, 110, 148, 162, 210, 251, 275, 367
CviKI_1	RGCY	8 cut(s)	33, 110, 148, 162, 210, 251, 275, 367
DdeI	CTNAG	4 cut(s)	158, 245, 328, 377
DpnI	GATC	2 cut(s)	373, 405
DpnII	GATC	2 cut(s)	371, 403
Eam1104I	CTCTTC	1 cut(s)	13
EarI	CTCTTC	1 cut(s)	13
EciI	GGCGGA	1 cut(s)	220
Eco24I	GRGCYC	1 cut(s)	369
EcoT38I	GRGCYC	1 cut(s)	369
Esp3I	CGTCTC	1 cut(s)	107
FaeI	CATG	1 cut(s)	361
FaiI	YATR	2 cut(s)	307, 359
FatI	CATG	1 cut(s)	357
FauI	CCCGC	1 cut(s)	194
FbaI	TGATCA	1 cut(s)	403
FokI	GGATG	2 cut(s)	57, 213
FriOI	GRGCYC	1 cut(s)	369
GlaI	GCGC	1 cut(s)	288
HapII	CCGG	2 cut(s)	55, 223
HgaI	GACGC	2 cut(s)	26, 416
HhaI	GCGC	1 cut(s)	289
Hin1I	GRCGYC	2 cut(s)	6, 114
Hin1II	CATG	1 cut(s)	361
Hin6I	GCGC	1 cut(s)	287
HinP1I	GCGC	1 cut(s)	287
HinfI	GANTC	1 cut(s)	332
HpaII	CCGG	2 cut(s)	55, 223
Hpy188III	TCNNGA	2 cut(s)	74, 298
Hpy99I	CGWCG	3 cut(s)	11, 116, 355
HpyAV	CCTTC	2 cut(s)	59, 107
HpyCH4III	ACNGT	2 cut(s)	134, 175
HpyCH4IV	ACGT	2 cut(s)	6, 114
HpyCH4V	TGCA	1 cut(s)	216
HpyF10VI	GCNNNNNNNGC	1 cut(s)	207
HpyF3I	CTNAG	4 cut(s)	158, 245, 328, 377
HpySE526I	ACGT	2 cut(s)	6, 114
Hsp92I	GRCGYC	2 cut(s)	6, 114
Hsp92II	CATG	1 cut(s)	361
HspAI	GCGC	1 cut(s)	287
Ksp22I	TGATCA	1 cut(s)	403
Kzo9I	GATC	2 cut(s)	371, 403
LmnI	GCTCC	5 cut(s)	31, 167, 207, 350, 372
LpnPI	CCDG	5 cut(s)	47, 68, 87, 139, 236
LweI	GCATC	1 cut(s)	235
MaeII	ACGT	2 cut(s)	6, 114
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	2 cut(s)	373, 405
MboI	GATC	2 cut(s)	371, 403
MboII	GAAGA	5 cut(s)	27, 30, 246, 286, 313
MhlI	GDGCHC	3 cut(s)	28, 347, 369
MluCI	AATT	1 cut(s)	399
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	1 cut(s)	333
MnlI	CCTC	6 cut(s)	5, 14, 167, 175, 358, 405
MspI	CCGG	2 cut(s)	55, 223
MvnI	CGCG	2 cut(s)	201, 287
MwoI	GCNNNNNNNGC	1 cut(s)	207
NdeII	GATC	2 cut(s)	371, 403
NlaIII	CATG	1 cut(s)	361
NlaIV	GGNNCC	3 cut(s)	53, 265, 368
NmuCI	GTSAC	1 cut(s)	277
PleI	GAGTC	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	326
PspN4I	GGNNCC	3 cut(s)	53, 265, 368
Sau3AI	GATC	2 cut(s)	371, 403
SchI	GAGTC	1 cut(s)	326
SduI	GDGCHC	3 cut(s)	28, 347, 369
SetI	ASST	9 cut(s)	9, 25, 117, 150, 159, 164, 212, 253, 277
SfaNI	GCATC	1 cut(s)	235
Sse9I	AATT	1 cut(s)	399
SsiI	CCGC	4 cut(s)	201, 205, 267, 285
TaaI	ACNGT	2 cut(s)	134, 175
TaiI	ACGT	2 cut(s)	9, 117
TaqI	TCGA	1 cut(s)	335
TasI	AATT	1 cut(s)	399
TseFI	GTSAC	1 cut(s)	277
Tsp45I	GTSAC	1 cut(s)	277
ZraI	GACGTC	2 cut(s)	7, 115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.