Rh3BG107500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0011169
Physical Location & Seq
Forward (+)
8604581 .. 8606565
1985 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG107500.1

Sequence Viewer

Length: 1137 bp
ATGGGAACCCCTTACACCCTAAGCACAACTCAAACAACTCAATCTTGCACGCAAAGCGACCCTTTCATATTCACCAACAACTACCAATCAACCTTACCACCACTCCGATTCAACATTTCCCTTATACTCTACGCCGCCGTGGCTATCATGCACCACAGAAGCCGATTAACCACCGCGGTGCCACCCCCTTCTCCTATCCCAACAGCTAAAGGCTCCCGCTCCGCAGCCTCCGAAACCTTCACGCATTTCCTCGACAACTGCCTCAAGATCCCCGAGCTCATCGCATTGCCGCCTGCCCACCTCTCCGGCACCGGCCCACGTCACCAGATCCCCACTTACGTCGACTTCCAATCCCTCTCCGCCGACTCCATCGCGCGCCTCCTCGTCTCGGCCAAGCAACTCGGAGCGTTTCGGATCATCGGTCATGGAATATCAACCGATGAGTTGAGGTCCGTGGTTCAAGAAGCCGAATCCATTTTTGGAAATGCCGATCATCAATCTAGACGTTTCGTTGAGGGCGTTGGTGATCGTGAGGAGATTGCTTGGGTTCGGGATCAAAAGAGCAAATCAGACCAACGATATGAGAATTTTTGTAACAATATGGATAAGGTTGCGAGTAAAATTGAAGCGATTGCAGAACAAATGAGTGAAGTTTTCTATAAAAATGCGAAAGCGGAATTTGTGAGAAGAAGCGAAGAGAAAGATTGGGTTTTTAGGCTATACAGATACAATGATAATACAATGGAGCAAAACCACAGGAATTCACTGAATGAGATCGACTGTGATCGTGAGTGTGATGATCATGGTTTTTGCATCCACCTTCCGCTAGAACATTCTCAGTTCTCCATTCAATCAGAGCGAGGTCCATTGTCTTTTGATGCAGGCCCTGAAACGCTTGTTGTTACAGTCGGAAAGCAGCTAGAGGGATTTAAATGTGTTTCAGGGGAAATGATCTTTGTGCCTGACATAAGCAGAAGCCAAGCCTCTTTCTCCTTGCAACTCAAAGTTCCATTTTCGTCTAATTTAAGAAAAAATTCCAAGACAGTTTCGATTGTTGATCAAGTTTTCATTGCAATCTTCCTCTGCTTATTATACAAAGCTGTGGTGTTCATGTACGCTTACATTACAACTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

378

Amino Acids

42.56

Weight (kDa)

6.27

Isoelectric Point (pI)

51.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011169)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38500
fragaria_vesca FvH4_6g10130
malus_domestica MD12G1185800.v1.1
prunus_persica Prupe.6G291400_v2.0.a1
pyrus_communis pycom12g17450
rosa_chinensis RchiOBHm_Chr3g0460831
rosa_laevigata RLG00000018120 RLG00000024976
rosa_multiflora Rmu_sc0007678.1_g000011
rosa_roxburghii Rroxscaffold_5G00381390 Rroxscaffold_6G00419180
rosa_rugosa Rorug02G0156100 Rorug03G0046800
rosa_samantha Rh1AG194200 Rh3AG103900 Rh3BG107500 Rh3CG109400 Rh3DG109300 Rh7DG284200
rosa_wichuraiana Rw3G008840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 178, 308
AccBSI CCGCTC 1 cut(s) 219
AccI GTMKAC 1 cut(s) 342
AccII CGCG 3 cut(s) 176, 374, 376
AciI CCGC 9 cut(s) 135, 174, 176, 217, 222, 290, 360, 674, 824
AclWI GGATC 4 cut(s) 262, 322, 422, 561
AcoI YGGCCR 1 cut(s) 390
AcsI RAATTY 4 cut(s) 586, 677, 760, 1033
AfaI GTAC 1 cut(s) 1115
AfiI CCNNNNNNNGG 1 cut(s) 388
AgsI TTSAA 4 cut(s) 112, 461, 626, 851
AjiI CACGTC 1 cut(s) 320
AjuI GAANNNNNNNTTGG 2 cut(s) 462, 494
AleI CACNNNNGTG 1 cut(s) 176
AluBI AGCT 4 cut(s) 206, 277, 919, 1100
AluI AGCT 4 cut(s) 206, 277, 919, 1100
Alw21I GWGCWC 1 cut(s) 279
Alw26I GTCTC 1 cut(s) 391
AlwI GGATC 4 cut(s) 262, 322, 422, 561
AlwNI CAGNNNCTG 1 cut(s) 887
Ama87I CYCGRG 1 cut(s) 272
AoxI GGCC 3 cut(s) 313, 390, 883
ApeKI GCWGC 2 cut(s) 224, 916
ApoI RAATTY 4 cut(s) 586, 677, 760, 1033
Asp700I GAANNNNTTC 1 cut(s) 1033
AspLEI GCGC 2 cut(s) 376, 378
AspS9I GGNCC 4 cut(s) 314, 450, 863, 884
AsuHPI GGTGA 3 cut(s) 64, 314, 536
AvaI CYCGRG 1 cut(s) 272
AvaII GGWCC 2 cut(s) 450, 863
BanI GGYRCC 2 cut(s) 178, 308
BanII GRGCYC 1 cut(s) 279
Bbv12I GWGCWC 1 cut(s) 279
BbvI GCAGC 2 cut(s) 236, 928
BccI CCATC 1 cut(s) 377
BceAI ACGGC 1 cut(s) 122
BclI TGATCA 2 cut(s) 799, 1057
BcoDI GTCTC 1 cut(s) 391
BfaI CTAG 3 cut(s) 501, 827, 920
BglI GCCNNNNNGGC 1 cut(s) 140
BisI GCNGC 4 cut(s) 135, 225, 290, 917
BlsI GCNGC 4 cut(s) 136, 226, 291, 918
Bme18I GGWCC 2 cut(s) 450, 863
BmeT110I CYCGRG 1 cut(s) 272
BmgBI CACGTC 1 cut(s) 320
BmgT120I GGNCC 4 cut(s) 314, 450, 863, 884
BmiI GGNNCC 4 cut(s) 7, 180, 214, 310
BmsI GCATC 2 cut(s) 822, 868
Bpu10I CCTNAGC 1 cut(s) 20
BpuEI CTTGAG 1 cut(s) 248
BsaJI CCNNGG 3 cut(s) 138, 174, 453
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
Bsc4I CCNNNNNNNGG 1 cut(s) 388
Bse118I RCCGGY 1 cut(s) 311
Bse3DI GCAATG 2 cut(s) 284, 1068
BseDI CCNNGG 3 cut(s) 138, 174, 453
BseGI GGATG 1 cut(s) 813
BseLI CCNNNNNNNGG 1 cut(s) 388
BseMI GCAATG 2 cut(s) 284, 1068
BseMII CTCAG 1 cut(s) 851
BsePI GCGCGC 1 cut(s) 374
BseRI GAGGAG 2 cut(s) 371, 548
BseXI GCAGC 2 cut(s) 236, 928
Bsh1236I CGCG 3 cut(s) 176, 374, 376
BshFI GGCC 3 cut(s) 315, 392, 885
BshNI GGYRCC 2 cut(s) 178, 308
BsiHKAI GWGCWC 1 cut(s) 279
BsiHKCI CYCGRG 1 cut(s) 272
BsiSI CCGG 2 cut(s) 306, 312
BslI CCNNNNNNNGG 1 cut(s) 388
BsmAI GTCTC 1 cut(s) 391
BsmBI CGTCTC 1 cut(s) 391
BsnI GGCC 3 cut(s) 315, 392, 885
BsoBI CYCGRG 1 cut(s) 272
Bsp1286I GDGCHC 1 cut(s) 279
BspACI CCGC 9 cut(s) 135, 174, 176, 217, 222, 290, 360, 674, 824
BspANI GGCC 3 cut(s) 315, 392, 885
BspCNI CTCAG 1 cut(s) 850
BspFNI CGCG 3 cut(s) 176, 374, 376
BspLI GGNNCC 4 cut(s) 7, 180, 214, 310
BspPI GGATC 4 cut(s) 262, 322, 422, 561
BspT107I GGYRCC 2 cut(s) 178, 308
BsrBI CCGCTC 1 cut(s) 219
BsrDI GCAATG 2 cut(s) 284, 1068
BsrFI RCCGGY 1 cut(s) 311
BssAI RCCGGY 1 cut(s) 311
BssECI CCNNGG 3 cut(s) 138, 174, 453
BssHII GCGCGC 1 cut(s) 374
Bst4CI ACNGT 3 cut(s) 782, 907, 1045
Bst6I CTCTTC 1 cut(s) 690
BstC8I GCNNGC 4 cut(s) 50, 294, 376, 883
BstDEI CTNAG 2 cut(s) 20, 837
BstDSI CCRYGG 3 cut(s) 138, 174, 453
BstF5I GGATG 1 cut(s) 813
BstFNI CGCG 3 cut(s) 176, 374, 376
BstHHI GCGC 2 cut(s) 376, 378
BstMAI GTCTC 1 cut(s) 391
BstMWI GCNNNNNNNGC 2 cut(s) 54, 140
BstUI CGCG 3 cut(s) 176, 374, 376
BstV1I GCAGC 2 cut(s) 236, 928
BstX2I RGATCY 2 cut(s) 267, 327
BstYI RGATCY 2 cut(s) 267, 327
BsuRI GGCC 3 cut(s) 315, 392, 885
BtgI CCRYGG 3 cut(s) 138, 174, 453
BtgZI GCGATG 2 cut(s) 265, 355
BtrI CACGTC 1 cut(s) 320
BtsCI GGATG 1 cut(s) 813
BtsIMutI CAGTG 1 cut(s) 764
Cac8I GCNNGC 4 cut(s) 50, 294, 376, 883
CaiI CAGNNNCTG 1 cut(s) 887
CfoI GCGC 2 cut(s) 376, 378
Cfr10I RCCGGY 1 cut(s) 311
Cfr13I GGNCC 4 cut(s) 314, 450, 863, 884
Cfr42I CCGCGG 1 cut(s) 177
Csp6I GTAC 1 cut(s) 1114
CviAII CATG 4 cut(s) 148, 425, 803, 1111
CviQI GTAC 1 cut(s) 1114
DdeI CTNAG 2 cut(s) 20, 837
DraI TTTAAA 1 cut(s) 931
EaeI YGGCCR 1 cut(s) 390
Eam1104I CTCTTC 1 cut(s) 690
EarI CTCTTC 1 cut(s) 690
EciI GGCGGA 1 cut(s) 349
Ecl136II GAGCTC 1 cut(s) 277
Eco24I GRGCYC 1 cut(s) 279
Eco47I GGWCC 2 cut(s) 450, 863
Eco53kI GAGCTC 1 cut(s) 277
Eco88I CYCGRG 1 cut(s) 272
EcoICRI GAGCTC 1 cut(s) 277
EcoO109I RGGNCCY 1 cut(s) 884
EcoRI GAATTC 1 cut(s) 760
EcoT38I GRGCYC 1 cut(s) 279
Esp3I CGTCTC 1 cut(s) 391
FaeI CATG 4 cut(s) 151, 428, 806, 1114
FalI AAGNNNNNCTT 2 cut(s) 46, 78
FatI CATG 4 cut(s) 147, 424, 802, 1110
FauI CCCGC 1 cut(s) 224
FbaI TGATCA 2 cut(s) 799, 1057
FblI GTMKAC 1 cut(s) 342
Fnu4HI GCNGC 4 cut(s) 135, 225, 290, 917
FokI GGATG 1 cut(s) 800
FriOI GRGCYC 1 cut(s) 279
Fsp4HI GCNGC 4 cut(s) 135, 225, 290, 917
FspBI CTAG 3 cut(s) 501, 827, 920
GlaI GCGC 2 cut(s) 375, 377
GluI GCNGC 4 cut(s) 135, 225, 290, 917
HaeIII GGCC 3 cut(s) 315, 392, 885
HapII CCGG 2 cut(s) 306, 312
HhaI GCGC 2 cut(s) 376, 378
Hin1II CATG 4 cut(s) 151, 428, 806, 1114
Hin6I GCGC 2 cut(s) 374, 376
HinP1I GCGC 2 cut(s) 374, 376
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HinfI GANTC 3 cut(s) 108, 365, 470
HpaII CCGG 2 cut(s) 306, 312
HphI GGTGA 3 cut(s) 64, 314, 536
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 7 cut(s) 107, 232, 404, 414, 571, 856, 911
Hpy188III TCNNGA 6 cut(s) 265, 461, 501, 530, 551, 788
Hpy8I GTNNAC 1 cut(s) 343
Hpy99I CGWCG 1 cut(s) 344
HpyAV CCTTC 3 cut(s) 198, 247, 830
HpyCH4III ACNGT 3 cut(s) 782, 907, 1045
HpyCH4IV ACGT 3 cut(s) 319, 339, 505
HpyCH4V TGCA 7 cut(s) 48, 151, 635, 813, 881, 997, 1073
HpyF10VI GCNNNNNNNGC 2 cut(s) 54, 140
HpyF3I CTNAG 2 cut(s) 20, 837
HpySE526I ACGT 3 cut(s) 319, 339, 505
Hsp92II CATG 4 cut(s) 151, 428, 806, 1114
HspAI GCGC 2 cut(s) 374, 376
Ksp22I TGATCA 2 cut(s) 799, 1057
KspI CCGCGG 1 cut(s) 177
LmnI GCTCC 4 cut(s) 218, 224, 404, 745
LpnPI CCDG 9 cut(s) 306, 319, 325, 338, 742, 867, 900, 927, 975
Lsp1109I GCAGC 2 cut(s) 236, 928
LweI GCATC 2 cut(s) 822, 868
MaeI CTAG 3 cut(s) 501, 827, 920
MaeII ACGT 3 cut(s) 319, 339, 505
MaeIII GTNAC 3 cut(s) 320, 593, 901
MbiI CCGCTC 1 cut(s) 219
MboII GAAGA 3 cut(s) 699, 707, 1069
MflI RGATCY 2 cut(s) 267, 327
MhlI GDGCHC 1 cut(s) 279
MluCI AATT 6 cut(s) 586, 621, 677, 760, 1021, 1033
MlyI GAGTC 1 cut(s) 359
MmeI TCCRAC 1 cut(s) 889
MroXI GAANNNNTTC 1 cut(s) 1033
MseI TTAA 3 cut(s) 167, 930, 1025
MslI CAYNNNNRTG 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 176
MspI CCGG 2 cut(s) 306, 312
MvnI CGCG 3 cut(s) 176, 374, 376
MwoI GCNNNNNNNGC 2 cut(s) 54, 140
NlaIII CATG 4 cut(s) 151, 428, 806, 1114
NlaIV GGNNCC 4 cut(s) 7, 180, 214, 310
NmeAIII GCCGAG 1 cut(s) 368
NmuCI GTSAC 1 cut(s) 320
OliI CACNNNNGTG 1 cut(s) 176
PauI GCGCGC 1 cut(s) 374
PcsI WCGNNNNNNNCGW 1 cut(s) 516
PdmI GAANNNNTTC 1 cut(s) 1033
PfeI GAWTC 2 cut(s) 108, 470
PkrI GCNGC 4 cut(s) 136, 226, 291, 918
PleI GAGTC 1 cut(s) 359
PpsI GAGTC 1 cut(s) 359
Psp124BI GAGCTC 1 cut(s) 279
PspN4I GGNNCC 4 cut(s) 7, 180, 214, 310
PspPI GGNCC 4 cut(s) 314, 450, 863, 884
PstNI CAGNNNCTG 1 cut(s) 887
PsuI RGATCY 2 cut(s) 267, 327
PteI GCGCGC 1 cut(s) 374
RsaI GTAC 1 cut(s) 1115
RsaNI GTAC 1 cut(s) 1114
RseI CAYNNNNRTG 1 cut(s) 176
SacI GAGCTC 1 cut(s) 279
SacII CCGCGG 1 cut(s) 177
SalI GTCGAC 1 cut(s) 341
SaqAI TTAA 3 cut(s) 167, 930, 1025
SatI GCNGC 4 cut(s) 135, 225, 290, 917
Sau96I GGNCC 4 cut(s) 314, 450, 863, 884
SchI GAGTC 1 cut(s) 359
SduI GDGCHC 1 cut(s) 279
SfaNI GCATC 2 cut(s) 822, 868
Sfr303I CCGCGG 1 cut(s) 177
SgrBI CCGCGG 1 cut(s) 177
SinI GGWCC 2 cut(s) 450, 863
SmiI ATTTAAAT 1 cut(s) 931
SmiMI CAYNNNNRTG 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 6 cut(s) 586, 621, 677, 760, 1021, 1033
SsiI CCGC 9 cut(s) 135, 174, 176, 217, 222, 290, 360, 674, 824
SspMI CTAG 3 cut(s) 501, 827, 920
SstI GAGCTC 1 cut(s) 279
SwaI ATTTAAAT 1 cut(s) 931
TaaI ACNGT 3 cut(s) 782, 907, 1045
TaiI ACGT 3 cut(s) 322, 342, 508
TaqI TCGA 4 cut(s) 252, 342, 777, 1049
TaqII GACCGA 1 cut(s) 410
TasI AATT 6 cut(s) 586, 621, 677, 760, 1021, 1033
TauI GCSGC 2 cut(s) 137, 292
TfiI GAWTC 2 cut(s) 108, 470
Tru1I TTAA 3 cut(s) 167, 930, 1025
Tru9I TTAA 3 cut(s) 167, 930, 1025
TscAI CASTG 1 cut(s) 771
TseFI GTSAC 1 cut(s) 320
TseI GCWGC 2 cut(s) 224, 916
Tsp45I GTSAC 1 cut(s) 320
TspDTI ATGAA 3 cut(s) 55, 1057, 1099
TspGWI ACGGA 1 cut(s) 442
TspRI CASTG 1 cut(s) 771
VpaK11BI GGWCC 2 cut(s) 450, 863
XapI RAATTY 4 cut(s) 586, 677, 760, 1033
XbaI TCTAGA 1 cut(s) 500
XmiI GTMKAC 1 cut(s) 342
XmnI GAANNNNTTC 1 cut(s) 1033
XspI CTAG 3 cut(s) 501, 827, 920
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.