FvH4_6g10130

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011169
Physical Location & Seq
Forward (+)
5997273 .. 5999114
1842 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g10130.t1

Sequence Viewer

Length: 1005 bp
ATGGCTGTCATGCATCACCGCAGCCAATTAGAGACGGCGGCGCCACCCCCATCTCCGATCCCAACCGCCAAGGGCTCCCGCTCCGCAGCCTCCGAAACCTTCACGCAATTCCTCGACAACTGCCTCAAGATCCCCGAGCTCATCGCATTGCCGCCTTCCCGCCTTCCCAGCATAAACTCACGTCAAATCGCTGACGTCGACTTCCGATCCCTCTCCGCCGACTCCATCGCCAGCCTCCTCGTCTCGGCCAAGCAATTCAGCGCGTTTCGAATCATCGGTCATGGAATAACGGCGGATGAGCTGAGTTCTGTGGTTCAAGAAGCCGAATCGGTTTTCGGAAATGCAGATCATCAATCGGGAGGTTTTATTGAGAGCGTTGGTAGCCGTGAGGTGTTTGCTTGGGTCCGGGATCAAAAGATCAAATCAGACCTAAGATATGACAACTTTTGTAACAATATGGGGAAGGTTGCGAGTAAAATTGAAGCGATTGCAGAACAAGTGAGTCAAATTTTCTATAAAAATCCGAATGTGGAATTTGTGAGAAGAAGTGAAGAGAAAGATTGGGGTTTTAGGCTATACAGATACAATCATGACCAAGATGATACAAAGGAGCACAACCACAGTAGTTCACGGAATGAGATCGACTGTGTCGACGACCGTGAGTGTGATGATCATGGTTTATGCATCCACCTTCCGCTTGAGCACTTTCAGTTCTACATTCAATCGGAGCGAGGTCCATTGACGTTTGATGCAGGGCCTGAGATGCTTGTCGTTACAATTGGAAAGCAGCTAGAGGGATTTAAATGTGTTTCAGGGGAAATGATATGTGTGCCTGACACAGGCAGAAGCCAAGCCTCTTTCTCCTTGCAACTCAAAGTTCCATTCTCATCGAATTTCCGAAAAAGTTCCAAGACAATTTCCATTGTTGATCAAGTTTTCATTGCAGTATTCCTCTGCTTACTATACAAAGTTGTTGTGTTCTTGTACACTTTTACAACTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

335

Amino Acids

37.43

Weight (kDa)

5.71

Isoelectric Point (pI)

46.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011169)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38500
fragaria_vesca FvH4_6g10130
malus_domestica MD12G1185800.v1.1
prunus_persica Prupe.6G291400_v2.0.a1
pyrus_communis pycom12g17450
rosa_chinensis RchiOBHm_Chr3g0460831
rosa_laevigata RLG00000018120 RLG00000024976
rosa_multiflora Rmu_sc0007678.1_g000011
rosa_roxburghii Rroxscaffold_5G00381390 Rroxscaffold_6G00419180
rosa_rugosa Rorug02G0156100 Rorug03G0046800
rosa_samantha Rh1AG194200 Rh3AG103900 Rh3BG107500 Rh3CG109400 Rh3DG109300 Rh7DG284200
rosa_wichuraiana Rw3G008840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 198
AccB1I GGYRCC 1 cut(s) 40
AccBSI CCGCTC 1 cut(s) 81
AccI GTMKAC 2 cut(s) 198, 651
AccII CGCG 1 cut(s) 263
AclWI GGATC 4 cut(s) 52, 124, 201, 417
AcoI YGGCCR 1 cut(s) 246
AcsI RAATTY 3 cut(s) 507, 533, 892
AcyI GRCGYC 2 cut(s) 41, 195
AfaI GTAC 1 cut(s) 986
AfiI CCNNNNNNNGG 2 cut(s) 244, 839
AgsI TTSAA 3 cut(s) 317, 482, 722
AjiI CACGTC 1 cut(s) 182
AluBI AGCT 3 cut(s) 139, 301, 790
AluI AGCT 3 cut(s) 139, 301, 790
Alw21I GWGCWC 3 cut(s) 141, 615, 705
Alw26I GTCTC 2 cut(s) 26, 247
AlwI GGATC 4 cut(s) 52, 124, 201, 417
AlwNI CAGNNNCTG 1 cut(s) 758
Ama87I CYCGRG 1 cut(s) 134
AoxI GGCC 2 cut(s) 246, 755
ApeKI GCWGC 3 cut(s) 21, 86, 787
ApoI RAATTY 3 cut(s) 507, 533, 892
ArsI GACNNNNNNTTYG 2 cut(s) 262, 294
Asp700I GAANNNNTTC 1 cut(s) 904
AspLEI GCGC 2 cut(s) 43, 263
AspS9I GGNCC 3 cut(s) 403, 734, 755
AsuC2I CCSGG 1 cut(s) 407
AsuHPI GGTGA 1 cut(s) 8
AsuII TTCGAA 1 cut(s) 268
AvaI CYCGRG 1 cut(s) 134
AvaII GGWCC 2 cut(s) 403, 734
BanI GGYRCC 1 cut(s) 40
BanII GRGCYC 2 cut(s) 77, 141
Bbv12I GWGCWC 3 cut(s) 141, 615, 705
BbvI GCAGC 3 cut(s) 33, 98, 799
BccI CCATC 2 cut(s) 58, 233
BceAI ACGGC 3 cut(s) 51, 306, 369
BclI TGATCA 2 cut(s) 670, 928
BcnI CCSGG 1 cut(s) 407
BcoDI GTCTC 2 cut(s) 26, 247
BfaI CTAG 1 cut(s) 791
BfoI RGCGCY 1 cut(s) 44
BisI GCNGC 5 cut(s) 22, 39, 87, 152, 788
BlsI GCNGC 5 cut(s) 23, 40, 88, 153, 789
Bme1390I CCNGG 1 cut(s) 407
Bme18I GGWCC 2 cut(s) 403, 734
BmeT110I CYCGRG 1 cut(s) 134
BmgBI CACGTC 1 cut(s) 182
BmgT120I GGNCC 3 cut(s) 403, 734, 755
BmiI GGNNCC 3 cut(s) 42, 76, 404
BmrFI CCNGG 1 cut(s) 407
BmsI GCATC 4 cut(s) 22, 693, 739, 753
Bpu14I TTCGAA 1 cut(s) 268
BpuEI CTTGAG 2 cut(s) 110, 719
BpuMI CCSGG 1 cut(s) 407
BsaHI GRCGYC 2 cut(s) 41, 195
BsaJI CCNNGG 1 cut(s) 69
Bsc4I CCNNNNNNNGG 2 cut(s) 244, 839
Bse3DI GCAATG 2 cut(s) 146, 939
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 2 cut(s) 301, 684
BseLI CCNNNNNNNGG 2 cut(s) 244, 839
BseMI GCAATG 2 cut(s) 146, 939
BseMII CTCAG 2 cut(s) 293, 750
BseRI GAGGAG 1 cut(s) 227
BseXI GCAGC 3 cut(s) 33, 98, 799
BseYI CCCAGC 1 cut(s) 167
Bsh1236I CGCG 1 cut(s) 263
Bsh1285I CGRYCG 1 cut(s) 658
BshFI GGCC 2 cut(s) 248, 757
BshNI GGYRCC 1 cut(s) 40
BsiEI CGRYCG 1 cut(s) 658
BsiHKAI GWGCWC 3 cut(s) 141, 615, 705
BsiHKCI CYCGRG 1 cut(s) 134
BsiSI CCGG 1 cut(s) 406
BslI CCNNNNNNNGG 2 cut(s) 244, 839
BsmAI GTCTC 2 cut(s) 26, 247
BsmBI CGTCTC 2 cut(s) 26, 247
BsnI GGCC 2 cut(s) 248, 757
BsoBI CYCGRG 1 cut(s) 134
Bsp119I TTCGAA 1 cut(s) 268
Bsp1286I GDGCHC 4 cut(s) 77, 141, 615, 705
Bsp1407I TGTACA 1 cut(s) 984
Bsp143I GATC 9 cut(s) 57, 129, 206, 346, 409, 417, 639, 670, 928
BspANI GGCC 2 cut(s) 248, 757
BspCNI CTCAG 2 cut(s) 294, 751
BspFNI CGCG 1 cut(s) 263
BspHI TCATGA 1 cut(s) 589
BspLI GGNNCC 3 cut(s) 42, 76, 404
BspPI GGATC 4 cut(s) 52, 124, 201, 417
BspT104I TTCGAA 1 cut(s) 268
BspT107I GGYRCC 1 cut(s) 40
BsrBI CCGCTC 1 cut(s) 81
BsrDI GCAATG 2 cut(s) 146, 939
BsrGI TGTACA 1 cut(s) 984
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 9 cut(s) 57, 129, 206, 346, 409, 417, 639, 670, 928
BssNI GRCGYC 2 cut(s) 41, 195
BssT1I CCWWGG 1 cut(s) 69
Bst4CI ACNGT 3 cut(s) 623, 647, 659
Bst6I CTCTTC 1 cut(s) 546
BstACI GRCGYC 2 cut(s) 41, 195
BstAUI TGTACA 1 cut(s) 984
BstBI TTCGAA 1 cut(s) 268
BstC8I GCNNGC 1 cut(s) 232
BstDEI CTNAG 3 cut(s) 302, 431, 759
BstENI CCTNNNNNAGG 1 cut(s) 837
BstF5I GGATG 2 cut(s) 301, 684
BstFNI CGCG 1 cut(s) 263
BstH2I RGCGCY 1 cut(s) 44
BstHHI GCGC 2 cut(s) 43, 263
BstKTI GATC 9 cut(s) 60, 132, 209, 349, 412, 420, 642, 673, 931
BstMAI GTCTC 2 cut(s) 26, 247
BstMBI GATC 9 cut(s) 57, 129, 206, 346, 409, 417, 639, 670, 928
BstMCI CGRYCG 1 cut(s) 658
BstMWI GCNNNNNNNGC 3 cut(s) 168, 381, 763
BstSCI CCNGG 1 cut(s) 405
BstUI CGCG 1 cut(s) 263
BstV1I GCAGC 3 cut(s) 33, 98, 799
BstX2I RGATCY 1 cut(s) 129
BstYI RGATCY 1 cut(s) 129
BsuRI GGCC 2 cut(s) 248, 757
BtgZI GCGATG 2 cut(s) 127, 211
BtrI CACGTC 1 cut(s) 182
BtsCI GGATG 2 cut(s) 301, 684
Cac8I GCNNGC 1 cut(s) 232
CaiI CAGNNNCTG 1 cut(s) 758
CciI TCATGA 1 cut(s) 589
CfoI GCGC 2 cut(s) 43, 263
Cfr13I GGNCC 3 cut(s) 403, 734, 755
Csp6I GTAC 1 cut(s) 985
CviAII CATG 4 cut(s) 10, 281, 590, 674
CviQI GTAC 1 cut(s) 985
DdeI CTNAG 3 cut(s) 302, 431, 759
DinI GGCGCC 1 cut(s) 42
DpnI GATC 9 cut(s) 59, 131, 208, 348, 411, 419, 641, 672, 930
DpnII GATC 9 cut(s) 57, 129, 206, 346, 409, 417, 639, 670, 928
DraI TTTAAA 1 cut(s) 802
EaeI YGGCCR 1 cut(s) 246
Eam1104I CTCTTC 1 cut(s) 546
EarI CTCTTC 1 cut(s) 546
EciI GGCGGA 2 cut(s) 205, 308
Ecl136II GAGCTC 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 69
Eco24I GRGCYC 2 cut(s) 77, 141
Eco47I GGWCC 2 cut(s) 403, 734
Eco53kI GAGCTC 1 cut(s) 139
Eco88I CYCGRG 1 cut(s) 134
EcoICRI GAGCTC 1 cut(s) 139
EcoNI CCTNNNNNAGG 1 cut(s) 837
EcoO109I RGGNCCY 1 cut(s) 755
EcoT14I CCWWGG 1 cut(s) 69
EcoT22I ATGCAT 2 cut(s) 15, 686
EcoT38I GRGCYC 2 cut(s) 77, 141
EgeI GGCGCC 1 cut(s) 42
EheI GGCGCC 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 69
Esp3I CGTCTC 2 cut(s) 26, 247
FaeI CATG 4 cut(s) 13, 284, 593, 677
FatI CATG 4 cut(s) 9, 280, 589, 673
FauI CCCGC 2 cut(s) 86, 167
FbaI TGATCA 2 cut(s) 670, 928
FblI GTMKAC 2 cut(s) 198, 651
Fnu4HI GCNGC 5 cut(s) 22, 39, 87, 152, 788
FokI GGATG 2 cut(s) 308, 671
FriOI GRGCYC 2 cut(s) 77, 141
Fsp4HI GCNGC 5 cut(s) 22, 39, 87, 152, 788
FspBI CTAG 1 cut(s) 791
GlaI GCGC 2 cut(s) 42, 262
GluI GCNGC 5 cut(s) 22, 39, 87, 152, 788
GsaI CCCAGC 1 cut(s) 171
HaeII RGCGCY 1 cut(s) 44
HaeIII GGCC 2 cut(s) 248, 757
HapII CCGG 1 cut(s) 406
HhaI GCGC 2 cut(s) 43, 263
Hin1I GRCGYC 2 cut(s) 41, 195
Hin1II CATG 4 cut(s) 13, 284, 593, 677
Hin6I GCGC 2 cut(s) 41, 261
HinP1I GCGC 2 cut(s) 41, 261
HincII GTYRAC 2 cut(s) 199, 652
HindII GTYRAC 2 cut(s) 199, 652
HinfI GANTC 4 cut(s) 221, 270, 326, 502
HpaII CCGG 1 cut(s) 406
HphI GGTGA 1 cut(s) 8
Hpy166II GTNNAC 4 cut(s) 199, 629, 652, 987
Hpy188I TCNGA 8 cut(s) 57, 94, 206, 338, 427, 525, 727, 899
Hpy188III TCNNGA 4 cut(s) 127, 317, 357, 590
Hpy8I GTNNAC 4 cut(s) 199, 629, 652, 987
Hpy99I CGWCG 2 cut(s) 200, 656
HpyAV CCTTC 5 cut(s) 109, 165, 173, 457, 701
HpyCH4III ACNGT 3 cut(s) 623, 647, 659
HpyCH4IV ACGT 3 cut(s) 181, 195, 743
HpyCH4V TGCA 7 cut(s) 13, 344, 491, 684, 752, 868, 944
HpyF10VI GCNNNNNNNGC 3 cut(s) 168, 381, 763
HpyF3I CTNAG 3 cut(s) 302, 431, 759
HpySE526I ACGT 3 cut(s) 181, 195, 743
Hsp92I GRCGYC 2 cut(s) 41, 195
Hsp92II CATG 4 cut(s) 13, 284, 593, 677
HspAI GCGC 2 cut(s) 41, 261
KasI GGCGCC 1 cut(s) 40
Ksp22I TGATCA 2 cut(s) 670, 928
Kzo9I GATC 9 cut(s) 57, 129, 206, 346, 409, 417, 639, 670, 928
LmnI GCTCC 4 cut(s) 80, 86, 610, 727
LpnPI CCDG 8 cut(s) 181, 244, 419, 738, 771, 798, 825, 846
Lsp1109I GCAGC 3 cut(s) 33, 98, 799
LweI GCATC 4 cut(s) 22, 693, 739, 753
MaeI CTAG 1 cut(s) 791
MaeII ACGT 3 cut(s) 181, 195, 743
MaeIII GTNAC 2 cut(s) 449, 772
MalI GATC 9 cut(s) 59, 131, 208, 348, 411, 419, 641, 672, 930
MbiI CCGCTC 1 cut(s) 81
MboI GATC 9 cut(s) 57, 129, 206, 346, 409, 417, 639, 670, 928
MboII GAAGA 2 cut(s) 555, 563
MfeI CAATTG 1 cut(s) 777
MflI RGATCY 1 cut(s) 129
MhlI GDGCHC 4 cut(s) 77, 141, 615, 705
MluCI AATT 9 cut(s) 26, 107, 254, 477, 507, 533, 777, 892, 915
Mly113I GGCGCC 1 cut(s) 41
MlyI GAGTC 2 cut(s) 215, 511
Mph1103I ATGCAT 2 cut(s) 15, 686
MroXI GAANNNNTTC 1 cut(s) 904
MseI TTAA 1 cut(s) 801
MspI CCGG 1 cut(s) 406
MspR9I CCNGG 1 cut(s) 407
MunI CAATTG 1 cut(s) 777
MvnI CGCG 1 cut(s) 263
MwoI GCNNNNNNNGC 3 cut(s) 168, 381, 763
NarI GGCGCC 1 cut(s) 41
NciI CCSGG 1 cut(s) 407
NdeII GATC 9 cut(s) 57, 129, 206, 346, 409, 417, 639, 670, 928
NlaIII CATG 4 cut(s) 13, 284, 593, 677
NlaIV GGNNCC 3 cut(s) 42, 76, 404
NmeAIII GCCGAG 1 cut(s) 224
NsiI ATGCAT 2 cut(s) 15, 686
NspV TTCGAA 1 cut(s) 268
PagI TCATGA 1 cut(s) 589
PcsI WCGNNNNNNNCGW 2 cut(s) 195, 648
PdmI GAANNNNTTC 1 cut(s) 904
PfeI GAWTC 2 cut(s) 270, 326
PflFI GACNNNGTC 1 cut(s) 647
PfoI TCCNGGA 1 cut(s) 405
PkrI GCNGC 5 cut(s) 23, 40, 88, 153, 789
PleI GAGTC 2 cut(s) 215, 510
PluTI GGCGCC 1 cut(s) 44
PpsI GAGTC 2 cut(s) 215, 510
Psp124BI GAGCTC 1 cut(s) 141
PspFI CCCAGC 1 cut(s) 167
PspN4I GGNNCC 3 cut(s) 42, 76, 404
PspPI GGNCC 3 cut(s) 403, 734, 755
PstNI CAGNNNCTG 1 cut(s) 758
PsuI RGATCY 1 cut(s) 129
PsyI GACNNNGTC 1 cut(s) 647
RsaI GTAC 1 cut(s) 986
RsaNI GTAC 1 cut(s) 985
SacI GAGCTC 1 cut(s) 141
SalI GTCGAC 2 cut(s) 197, 650
SaqAI TTAA 1 cut(s) 801
SatI GCNGC 5 cut(s) 22, 39, 87, 152, 788
Sau3AI GATC 9 cut(s) 57, 129, 206, 346, 409, 417, 639, 670, 928
Sau96I GGNCC 3 cut(s) 403, 734, 755
SchI GAGTC 2 cut(s) 215, 511
ScrFI CCNGG 1 cut(s) 407
SduI GDGCHC 4 cut(s) 77, 141, 615, 705
SfaNI GCATC 4 cut(s) 22, 693, 739, 753
SfoI GGCGCC 1 cut(s) 42
SfuI TTCGAA 1 cut(s) 268
SinI GGWCC 2 cut(s) 403, 734
SmiI ATTTAAAT 1 cut(s) 802
SmlI CTYRAG 2 cut(s) 125, 698
SmoI CTYRAG 2 cut(s) 125, 698
Sse9I AATT 9 cut(s) 26, 107, 254, 477, 507, 533, 777, 892, 915
SspDI GGCGCC 1 cut(s) 40
SspMI CTAG 1 cut(s) 791
SstI GAGCTC 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 405
StyI CCWWGG 1 cut(s) 69
SwaI ATTTAAAT 1 cut(s) 802
TaaI ACNGT 3 cut(s) 623, 647, 659
TaiI ACGT 3 cut(s) 184, 198, 746
TaqI TCGA 6 cut(s) 114, 198, 268, 642, 651, 890
TaqII GACCGA 1 cut(s) 266
TasI AATT 9 cut(s) 26, 107, 254, 477, 507, 533, 777, 892, 915
TatI WGTACW 1 cut(s) 984
TauI GCSGC 2 cut(s) 41, 154
TfiI GAWTC 2 cut(s) 270, 326
Tru1I TTAA 1 cut(s) 801
Tru9I TTAA 1 cut(s) 801
TseI GCWGC 3 cut(s) 21, 86, 787
TspDTI ATGAA 1 cut(s) 928
TspGWI ACGGA 1 cut(s) 646
Tth111I GACNNNGTC 1 cut(s) 647
VpaK11BI GGWCC 2 cut(s) 403, 734
XagI CCTNNNNNAGG 1 cut(s) 837
XapI RAATTY 3 cut(s) 507, 533, 892
XmiI GTMKAC 2 cut(s) 198, 651
XmnI GAANNNNTTC 1 cut(s) 904
XspI CTAG 1 cut(s) 791
ZraI GACGTC 1 cut(s) 196
Zsp2I ATGCAT 2 cut(s) 15, 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.