Rroxscaffold_6G00419180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0011169
Physical Location & Seq
Reverse (-)
40700660 .. 40702413
1754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00419180.1

Sequence Viewer

Length: 1125 bp
ATGGGGACCCCTTACACCCTAAGCACAACTCAAACAACTCAATCTTGCACGCAAAGCCACCCTTTGATATTCACCAACAACTACCGATCAACCTCACCACCACTCCGATTCAACATTTCCCTTATACTCTACGCCGCCGTGGCTATCATGCACCACAGAAGCCGATTAACCACCTCGGTGCCACCCCCTTCTCCGATCCCAACAGCTAAAGGCTCCCGCTCCGCAGCCTCCGAAACCTTCACTGATTTCCTCGACAACTGCCTCAAGATCCCCGAGCTCATCGCATTGCCCCCTGCCCACCTCTCCGGCACCGGCCCAAGTCACCAGATCCCCGCTGACGTCGACTTCCGATCCCTCTCCGCCGACTCCATCGGTCGCCTCCTCGTCTCGGCCAAGCAACTCGGAGCGTTTCGGATCATCGGTCATGGAATATCAACCGATGAGTTGAGGTCCGTGGTTCAAGAAGCCGAATCCTTTTTTGGAAATGCCGATCATCAATCTAGACGTTTCGTTGAGCGCGTTGGTGATCGTGAGGAGATTGCTTGGGTTCGGGATCAAAAGAGCAAATCAGACCAACGATATGAGAATTTTTGTAACAATATGGATAAGGTTGCGAGTAAAATTGAAGCGATTGCAGAACAAGTGAGTGAAGTTTTCTATAAAAATGCGAAAGCGGAATTTGTGAGAAGAAATGAAGAGAAAGATTGGGTTTTTAGGCTATACAGATACAATGATAATACAATGGAGCAAAACCACAGGAATTCACTGAATGAGATCGACTGTGATGATCATGGTTTTTGCATCCACCTTCCGCTTGAACATTCTCAGTTCTACATTCAATCAGAGCGAGGTCCATTGTCTTTTGATGCAGGCCCTGAAACGCTTGTAGTTACAGTCGGAAAGCAGGTAGAGGGATTTAAATGTGTTTCAGGGGAAATGATCTTTGTGCCTGACATAAGCAGAAGCCAAGCCTCTTTCTCCTTGCAACTCAAAGTTCCATTTTCGTCTAATTTCAGAAAAAATTCGAAGACAGTTTCGATTGCTGATCAAGTTTTCATTGCAGTCTTCCTCTGCTTATTATACAAAGTTGTGGTGTTCATGTACGCTTACATTACAACTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

374

Amino Acids

42.11

Weight (kDa)

6.6

Isoelectric Point (pI)

48.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011169)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38500
fragaria_vesca FvH4_6g10130
malus_domestica MD12G1185800.v1.1
prunus_persica Prupe.6G291400_v2.0.a1
pyrus_communis pycom12g17450
rosa_chinensis RchiOBHm_Chr3g0460831
rosa_laevigata RLG00000018120 RLG00000024976
rosa_multiflora Rmu_sc0007678.1_g000011
rosa_roxburghii Rroxscaffold_5G00381390 Rroxscaffold_6G00419180
rosa_rugosa Rorug02G0156100 Rorug03G0046800
rosa_samantha Rh1AG194200 Rh3AG103900 Rh3BG107500 Rh3CG109400 Rh3DG109300 Rh7DG284200
rosa_wichuraiana Rw3G008840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 342
Acc36I ACCTGC 1 cut(s) 895
AccB1I GGYRCC 2 cut(s) 178, 308
AccBSI CCGCTC 1 cut(s) 219
AccI GTMKAC 1 cut(s) 342
AccII CGCG 1 cut(s) 519
AciI CCGC 7 cut(s) 135, 217, 222, 333, 360, 674, 812
AclWI GGATC 6 cut(s) 190, 262, 322, 345, 422, 561
AcoI YGGCCR 1 cut(s) 390
AcsI RAATTY 4 cut(s) 586, 677, 760, 1021
AcyI GRCGYC 1 cut(s) 339
AfaI GTAC 1 cut(s) 1103
AfiI CCNNNNNNNGG 1 cut(s) 388
AgsI TTSAA 5 cut(s) 112, 461, 626, 818, 839
AjuI GAANNNNNNNTTGG 2 cut(s) 462, 494
AleI CACNNNNGTG 1 cut(s) 176
AluBI AGCT 2 cut(s) 206, 277
AluI AGCT 2 cut(s) 206, 277
Alw21I GWGCWC 1 cut(s) 279
Alw26I GTCTC 1 cut(s) 391
AlwI GGATC 6 cut(s) 190, 262, 322, 345, 422, 561
AlwNI CAGNNNCTG 1 cut(s) 875
Ama87I CYCGRG 1 cut(s) 272
AoxI GGCC 3 cut(s) 313, 390, 871
ApeKI GCWGC 1 cut(s) 224
ApoI RAATTY 4 cut(s) 586, 677, 760, 1021
Asp700I GAANNNNTTC 1 cut(s) 1021
AspLEI GCGC 1 cut(s) 519
AspS9I GGNCC 5 cut(s) 6, 314, 450, 851, 872
AsuHPI GGTGA 4 cut(s) 64, 87, 314, 536
AsuII TTCGAA 1 cut(s) 1025
AvaI CYCGRG 1 cut(s) 272
AvaII GGWCC 3 cut(s) 6, 450, 851
BanI GGYRCC 2 cut(s) 178, 308
BanII GRGCYC 1 cut(s) 279
BbsI GAAGAC 2 cut(s) 1034, 1057
Bbv12I GWGCWC 1 cut(s) 279
BbvI GCAGC 1 cut(s) 236
BccI CCATC 1 cut(s) 377
BceAI ACGGC 1 cut(s) 122
BclI TGATCA 2 cut(s) 787, 1045
BcoDI GTCTC 1 cut(s) 391
BfaI CTAG 1 cut(s) 501
BfuAI ACCTGC 1 cut(s) 895
BglI GCCNNNNNGGC 1 cut(s) 140
BisI GCNGC 2 cut(s) 135, 225
BlsI GCNGC 2 cut(s) 136, 226
Bme18I GGWCC 3 cut(s) 6, 450, 851
BmeT110I CYCGRG 1 cut(s) 272
BmgT120I GGNCC 5 cut(s) 6, 314, 450, 851, 872
BmiI GGNNCC 5 cut(s) 7, 8, 180, 214, 310
BmsI GCATC 2 cut(s) 810, 856
BpiI GAAGAC 2 cut(s) 1034, 1057
Bpu10I CCTNAGC 1 cut(s) 20
Bpu14I TTCGAA 1 cut(s) 1025
BpuEI CTTGAG 1 cut(s) 248
BsaHI GRCGYC 1 cut(s) 339
BsaJI CCNNGG 3 cut(s) 138, 174, 453
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
Bsc4I CCNNNNNNNGG 1 cut(s) 388
Bse118I RCCGGY 1 cut(s) 311
Bse3DI GCAATG 2 cut(s) 284, 1056
BseDI CCNNGG 3 cut(s) 138, 174, 453
BseGI GGATG 1 cut(s) 801
BseLI CCNNNNNNNGG 1 cut(s) 388
BseMI GCAATG 2 cut(s) 284, 1056
BseMII CTCAG 1 cut(s) 839
BseRI GAGGAG 2 cut(s) 371, 548
BseXI GCAGC 1 cut(s) 236
Bsh1236I CGCG 1 cut(s) 519
Bsh1285I CGRYCG 1 cut(s) 376
BshFI GGCC 3 cut(s) 315, 392, 873
BshNI GGYRCC 2 cut(s) 178, 308
BsiEI CGRYCG 1 cut(s) 376
BsiHKAI GWGCWC 1 cut(s) 279
BsiHKCI CYCGRG 1 cut(s) 272
BsiSI CCGG 2 cut(s) 306, 312
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 1 cut(s) 388
BsmAI GTCTC 1 cut(s) 391
BsmBI CGTCTC 1 cut(s) 391
BsmFI GGGAC 1 cut(s) 19
BsnI GGCC 3 cut(s) 315, 392, 873
BsoBI CYCGRG 1 cut(s) 272
Bsp119I TTCGAA 1 cut(s) 1025
Bsp1286I GDGCHC 1 cut(s) 279
BspACI CCGC 7 cut(s) 135, 217, 222, 333, 360, 674, 812
BspANI GGCC 3 cut(s) 315, 392, 873
BspCNI CTCAG 1 cut(s) 838
BspFNI CGCG 1 cut(s) 519
BspLI GGNNCC 5 cut(s) 7, 8, 180, 214, 310
BspMI ACCTGC 1 cut(s) 895
BspPI GGATC 6 cut(s) 190, 262, 322, 345, 422, 561
BspT104I TTCGAA 1 cut(s) 1025
BspT107I GGYRCC 2 cut(s) 178, 308
BsrBI CCGCTC 1 cut(s) 219
BsrDI GCAATG 2 cut(s) 284, 1056
BsrFI RCCGGY 1 cut(s) 311
BssAI RCCGGY 1 cut(s) 311
BssECI CCNNGG 3 cut(s) 138, 174, 453
BssNI GRCGYC 1 cut(s) 339
Bst4CI ACNGT 3 cut(s) 782, 895, 1033
Bst6I CTCTTC 1 cut(s) 690
BstACI GRCGYC 1 cut(s) 339
BstBI TTCGAA 1 cut(s) 1025
BstC8I GCNNGC 2 cut(s) 50, 871
BstDEI CTNAG 2 cut(s) 20, 825
BstDSI CCRYGG 2 cut(s) 138, 453
BstF5I GGATG 1 cut(s) 801
BstFNI CGCG 1 cut(s) 519
BstHHI GCGC 1 cut(s) 519
BstMAI GTCTC 1 cut(s) 391
BstMCI CGRYCG 1 cut(s) 376
BstMWI GCNNNNNNNGC 2 cut(s) 54, 140
BstUI CGCG 1 cut(s) 519
BstV1I GCAGC 1 cut(s) 236
BstV2I GAAGAC 2 cut(s) 1034, 1057
BstX2I RGATCY 2 cut(s) 267, 327
BstYI RGATCY 2 cut(s) 267, 327
BsuRI GGCC 3 cut(s) 315, 392, 873
BtgI CCRYGG 2 cut(s) 138, 453
BtgZI GCGATG 1 cut(s) 265
BtsCI GGATG 1 cut(s) 801
BtsIMutI CAGTG 2 cut(s) 240, 764
BveI ACCTGC 1 cut(s) 895
Cac8I GCNNGC 2 cut(s) 50, 871
CaiI CAGNNNCTG 1 cut(s) 875
CfoI GCGC 1 cut(s) 519
Cfr10I RCCGGY 1 cut(s) 311
Cfr13I GGNCC 5 cut(s) 6, 314, 450, 851, 872
Csp6I GTAC 1 cut(s) 1102
CviAII CATG 4 cut(s) 148, 425, 791, 1099
CviQI GTAC 1 cut(s) 1102
DdeI CTNAG 2 cut(s) 20, 825
DraI TTTAAA 1 cut(s) 919
EaeI YGGCCR 1 cut(s) 390
Eam1104I CTCTTC 1 cut(s) 690
EarI CTCTTC 1 cut(s) 690
EciI GGCGGA 1 cut(s) 349
Ecl136II GAGCTC 1 cut(s) 277
Eco24I GRGCYC 1 cut(s) 279
Eco47I GGWCC 3 cut(s) 6, 450, 851
Eco53kI GAGCTC 1 cut(s) 277
Eco88I CYCGRG 1 cut(s) 272
EcoICRI GAGCTC 1 cut(s) 277
EcoO109I RGGNCCY 2 cut(s) 6, 872
EcoRI GAATTC 1 cut(s) 760
EcoT38I GRGCYC 1 cut(s) 279
Esp3I CGTCTC 1 cut(s) 391
FaeI CATG 4 cut(s) 151, 428, 794, 1102
FalI AAGNNNNNCTT 2 cut(s) 46, 78
FaqI GGGAC 1 cut(s) 19
FatI CATG 4 cut(s) 147, 424, 790, 1098
FauI CCCGC 2 cut(s) 224, 340
FbaI TGATCA 2 cut(s) 787, 1045
FblI GTMKAC 1 cut(s) 342
Fnu4HI GCNGC 2 cut(s) 135, 225
FokI GGATG 1 cut(s) 788
FriOI GRGCYC 1 cut(s) 279
Fsp4HI GCNGC 2 cut(s) 135, 225
FspBI CTAG 1 cut(s) 501
GlaI GCGC 1 cut(s) 518
GluI GCNGC 2 cut(s) 135, 225
HaeIII GGCC 3 cut(s) 315, 392, 873
HapII CCGG 2 cut(s) 306, 312
HhaI GCGC 1 cut(s) 519
Hin1I GRCGYC 1 cut(s) 339
Hin1II CATG 4 cut(s) 151, 428, 794, 1102
Hin6I GCGC 1 cut(s) 517
HinP1I GCGC 1 cut(s) 517
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HinfI GANTC 3 cut(s) 108, 365, 470
HpaII CCGG 2 cut(s) 306, 312
HphI GGTGA 4 cut(s) 64, 87, 314, 536
Hpy166II GTNNAC 1 cut(s) 343
Hpy188III TCNNGA 5 cut(s) 265, 461, 501, 530, 551
Hpy8I GTNNAC 1 cut(s) 343
Hpy99I CGWCG 1 cut(s) 344
HpyAV CCTTC 3 cut(s) 198, 247, 818
HpyCH4III ACNGT 3 cut(s) 782, 895, 1033
HpyCH4IV ACGT 2 cut(s) 339, 505
HpyCH4V TGCA 7 cut(s) 48, 151, 635, 801, 869, 985, 1061
HpyF10VI GCNNNNNNNGC 2 cut(s) 54, 140
HpyF3I CTNAG 2 cut(s) 20, 825
HpySE526I ACGT 2 cut(s) 339, 505
Hsp92I GRCGYC 1 cut(s) 339
Hsp92II CATG 4 cut(s) 151, 428, 794, 1102
HspAI GCGC 1 cut(s) 517
KflI GGGWCCC 1 cut(s) 6
Ksp22I TGATCA 2 cut(s) 787, 1045
LmnI GCTCC 4 cut(s) 218, 224, 404, 745
Lsp1109I GCAGC 1 cut(s) 236
LweI GCATC 2 cut(s) 810, 856
MaeI CTAG 1 cut(s) 501
MaeII ACGT 2 cut(s) 339, 505
MaeIII GTNAC 3 cut(s) 320, 593, 889
MbiI CCGCTC 1 cut(s) 219
MboII GAAGA 4 cut(s) 699, 707, 1039, 1057
MflI RGATCY 2 cut(s) 267, 327
MhlI GDGCHC 1 cut(s) 279
MluCI AATT 6 cut(s) 586, 621, 677, 760, 1009, 1021
MlyI GAGTC 1 cut(s) 359
MmeI TCCRAC 1 cut(s) 877
MroXI GAANNNNTTC 1 cut(s) 1021
MseI TTAA 2 cut(s) 167, 918
MslI CAYNNNNRTG 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 335
MspI CCGG 2 cut(s) 306, 312
MvnI CGCG 1 cut(s) 519
MwoI GCNNNNNNNGC 2 cut(s) 54, 140
NlaIII CATG 4 cut(s) 151, 428, 794, 1102
NlaIV GGNNCC 5 cut(s) 7, 8, 180, 214, 310
NmeAIII GCCGAG 1 cut(s) 368
NmuCI GTSAC 1 cut(s) 320
NspV TTCGAA 1 cut(s) 1025
OliI CACNNNNGTG 1 cut(s) 176
PcsI WCGNNNNNNNCGW 1 cut(s) 516
PdmI GAANNNNTTC 1 cut(s) 1021
PfeI GAWTC 2 cut(s) 108, 470
PkrI GCNGC 2 cut(s) 136, 226
PleI GAGTC 1 cut(s) 359
PpsI GAGTC 1 cut(s) 359
PpuMI RGGWCCY 1 cut(s) 6
Psp124BI GAGCTC 1 cut(s) 279
Psp5II RGGWCCY 1 cut(s) 6
PspN4I GGNNCC 5 cut(s) 7, 8, 180, 214, 310
PspPI GGNCC 5 cut(s) 6, 314, 450, 851, 872
PspPPI RGGWCCY 1 cut(s) 6
PstNI CAGNNNCTG 1 cut(s) 875
PsuI RGATCY 2 cut(s) 267, 327
RsaI GTAC 1 cut(s) 1103
RsaNI GTAC 1 cut(s) 1102
RseI CAYNNNNRTG 1 cut(s) 176
SacI GAGCTC 1 cut(s) 279
SalI GTCGAC 1 cut(s) 341
SaqAI TTAA 2 cut(s) 167, 918
SatI GCNGC 2 cut(s) 135, 225
Sau96I GGNCC 5 cut(s) 6, 314, 450, 851, 872
SchI GAGTC 1 cut(s) 359
SduI GDGCHC 1 cut(s) 279
SfaNI GCATC 2 cut(s) 810, 856
SfuI TTCGAA 1 cut(s) 1025
SinI GGWCC 3 cut(s) 6, 450, 851
SmiI ATTTAAAT 1 cut(s) 919
SmiMI CAYNNNNRTG 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 6 cut(s) 586, 621, 677, 760, 1009, 1021
SsiI CCGC 7 cut(s) 135, 217, 222, 333, 360, 674, 812
SspMI CTAG 1 cut(s) 501
SstI GAGCTC 1 cut(s) 279
SwaI ATTTAAAT 1 cut(s) 919
TaaI ACNGT 3 cut(s) 782, 895, 1033
TaiI ACGT 2 cut(s) 342, 508
TaqI TCGA 5 cut(s) 252, 342, 777, 1025, 1037
TaqII GACCGA 2 cut(s) 362, 410
TasI AATT 6 cut(s) 586, 621, 677, 760, 1009, 1021
TauI GCSGC 1 cut(s) 137
TfiI GAWTC 2 cut(s) 108, 470
Tru1I TTAA 2 cut(s) 167, 918
Tru9I TTAA 2 cut(s) 167, 918
TscAI CASTG 2 cut(s) 247, 771
TseFI GTSAC 1 cut(s) 320
TseI GCWGC 1 cut(s) 224
Tsp45I GTSAC 1 cut(s) 320
TspDTI ATGAA 3 cut(s) 708, 1045, 1087
TspGWI ACGGA 1 cut(s) 442
TspRI CASTG 2 cut(s) 247, 771
VpaK11BI GGWCC 3 cut(s) 6, 450, 851
XapI RAATTY 4 cut(s) 586, 677, 760, 1021
XbaI TCTAGA 1 cut(s) 500
XmiI GTMKAC 1 cut(s) 342
XmnI GAANNNNTTC 1 cut(s) 1021
XspI CTAG 1 cut(s) 501
ZraI GACGTC 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.