Prupe.6G291400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0011169
Physical Location & Seq
Reverse (-)
26875355 .. 26877181
1827 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G291400.1

Sequence Viewer

Length: 1035 bp
ATGGCTATCATGCGCGGGAGGAGCCGGTTAACGTCGGGGGCGCCACCGCCTTCACCGATCCCGACTGCCAAAGGATCGCGCTCTGCATCCAACGAGAACTTCACGCAATTCCTCGACAAGTGCCTGCAAATCCCCGACCTCGCATGGCCACCTCAGCTTCACCCTCACTTCTCAGGCACACGCCATCCCGTTCCCGCCGAAGTCGATCTCCGATCGCTCTCCAGCGACGCCATCGCCCGGCTTCTCGTATCGGCCAGAGAATCCGGCGCGTTTCGGATCACCAATCACGGGATTTCGGCCGAGGAGTTGGGATCGGTGGTTCGGGAAGCCGAATCGGTTTTCGGAAATGACGGAAATCTCACTCGACGTTTCATTGAGCGCACTGGCAATCGTGAGGAGATTAAATGGGTTCGTGAATCGGGCCAAAAAGTGGCGGAGGACGAAAAATATCAGGTCTTTTGTAAAAGTATGGAGAAGGTTGCAAGCAAAGTTGAAGCAATTGCAGATCAAGTGAGTGAAGTTTTGTTCGCAAATGCAGAGAAGCAAGTTGAGAAGAAGATGAGAAGTGAACTGGGAAAAGTTAGGCTATACAGATACAATCATCAAGATCATTCAATGGAGCAAAACCCAAGTAGTAATTATTTGCAGAATGAGATCATTAATGGAAATAATTTGCGTGAGTGTGAGGATCATCATGCTTTGTGCCTTCACCTTCCGCTTGAGCATTCCCAGTTCAACATCCGATCAGAGGGAGAGGGAGGCTCTCTGTGTTTTGATGCAGGGCCAGAGACTCTAGTTGTCACTGTTGGAAATCAGCTTGAGGGGTTTAAATGTGTTTCAGGGGAAATGATCTTTGTCCCAGACATCATTAGAAGCCAAGCCTCTTTTTCCATACAATTCAAAGTCCCACTGCTTTCGAATTCGAGAAAAAAGTCTAACACAGTTTCAATTACTGATCAAATTTTCATTGCAGTCATCCTCTGTTTACTATACATGATTTTTGTGTTTGTATATACATACATTACAACAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

345

Amino Acids

38.51

Weight (kDa)

6.38

Isoelectric Point (pI)

40.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011169)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38500
fragaria_vesca FvH4_6g10130
malus_domestica MD12G1185800.v1.1
prunus_persica Prupe.6G291400_v2.0.a1
pyrus_communis pycom12g17450
rosa_chinensis RchiOBHm_Chr3g0460831
rosa_laevigata RLG00000018120 RLG00000024976
rosa_multiflora Rmu_sc0007678.1_g000011
rosa_roxburghii Rroxscaffold_5G00381390 Rroxscaffold_6G00419180
rosa_rugosa Rorug02G0156100 Rorug03G0046800
rosa_samantha Rh1AG194200 Rh3AG103900 Rh3BG107500 Rh3CG109400 Rh3DG109300 Rh7DG284200
rosa_wichuraiana Rw3G008840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 40
AccB7I CCANNNNNTGG 1 cut(s) 430
AccII CGCG 3 cut(s) 15, 79, 269
AciI CCGC 5 cut(s) 15, 47, 195, 434, 716
AclWI GGATC 5 cut(s) 52, 82, 284, 319, 696
AcoI YGGCCR 3 cut(s) 146, 252, 297
AcsI RAATTY 2 cut(s) 919, 960
AcyI GRCGYC 2 cut(s) 41, 228
AfiI CCNNNNNNNGG 4 cut(s) 237, 288, 430, 748
AgsI TTSAA 5 cut(s) 494, 615, 736, 901, 948
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AloI GAACNNNNNNTCC 2 cut(s) 303, 335
AluBI AGCT 2 cut(s) 157, 817
AluI AGCT 2 cut(s) 157, 817
Alw26I GTCTC 1 cut(s) 782
AlwI GGATC 5 cut(s) 52, 82, 284, 319, 696
AoxI GGCC 5 cut(s) 146, 252, 297, 421, 782
ApoI RAATTY 2 cut(s) 919, 960
AseI ATTAAT 1 cut(s) 660
AspLEI GCGC 5 cut(s) 15, 43, 81, 269, 381
AspS9I GGNCC 2 cut(s) 421, 782
AsuC2I CCSGG 1 cut(s) 238
AsuHPI GGTGA 4 cut(s) 45, 152, 271, 701
AsuII TTCGAA 1 cut(s) 917
BalI TGGCCA 1 cut(s) 148
BanI GGYRCC 1 cut(s) 40
BbvCI CCTCAGC 1 cut(s) 153
BccI CCATC 2 cut(s) 192, 239
BclI TGATCA 1 cut(s) 955
BcnI CCSGG 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 782
BfaI CTAG 1 cut(s) 794
BfoI RGCGCY 1 cut(s) 44
Bme1390I CCNGG 1 cut(s) 238
BmgT120I GGNCC 2 cut(s) 421, 782
BmiI GGNNCC 2 cut(s) 23, 42
BmrFI CCNGG 1 cut(s) 238
BmrI ACTGGG 2 cut(s) 581, 724
BmsI GCATC 2 cut(s) 95, 766
BmuI ACTGGG 2 cut(s) 581, 724
BplI GAGNNNNNCTC 2 cut(s) 746, 778
BpmI CTGGAG 1 cut(s) 205
Bpu10I CCTNAGC 1 cut(s) 153
Bpu14I TTCGAA 1 cut(s) 917
BpuEI CTTGAG 2 cut(s) 740, 839
BpuMI CCSGG 1 cut(s) 238
BsaHI GRCGYC 2 cut(s) 41, 228
BsaJI CCNNGG 1 cut(s) 300
Bsc4I CCNNNNNNNGG 4 cut(s) 237, 288, 430, 748
Bse118I RCCGGY 1 cut(s) 24
Bse1I ACTGG 3 cut(s) 388, 576, 730
Bse3DI GCAATG 1 cut(s) 966
BseDI CCNNGG 1 cut(s) 300
BseGI GGATG 4 cut(s) 86, 184, 738, 975
BseLI CCNNNNNNNGG 4 cut(s) 237, 288, 430, 748
BseMI GCAATG 1 cut(s) 966
BseMII CTCAG 2 cut(s) 167, 186
BseNI ACTGG 3 cut(s) 388, 576, 730
BseRI GAGGAG 3 cut(s) 34, 317, 410
BseX3I CGGCCG 1 cut(s) 297
Bsh1236I CGCG 3 cut(s) 15, 79, 269
Bsh1285I CGRYCG 2 cut(s) 215, 300
BshFI GGCC 5 cut(s) 148, 254, 299, 423, 784
BshNI GGYRCC 1 cut(s) 40
BsiEI CGRYCG 2 cut(s) 215, 300
BsiSI CCGG 3 cut(s) 25, 238, 264
BslFI GGGAC 2 cut(s) 842, 890
BslI CCNNNNNNNGG 4 cut(s) 237, 288, 430, 748
BsmAI GTCTC 1 cut(s) 782
BsmFI GGGAC 2 cut(s) 842, 890
BsmI GAATGC 1 cut(s) 724
BsnI GGCC 5 cut(s) 148, 254, 299, 423, 784
Bsp119I TTCGAA 1 cut(s) 917
BspACI CCGC 5 cut(s) 15, 47, 195, 434, 716
BspANI GGCC 5 cut(s) 148, 254, 299, 423, 784
BspCNI CTCAG 2 cut(s) 166, 185
BspFNI CGCG 3 cut(s) 15, 79, 269
BspLI GGNNCC 2 cut(s) 23, 42
BspPI GGATC 5 cut(s) 52, 82, 284, 319, 696
BspT104I TTCGAA 1 cut(s) 917
BspT107I GGYRCC 1 cut(s) 40
BsrDI GCAATG 1 cut(s) 966
BsrFI RCCGGY 1 cut(s) 24
BsrI ACTGG 3 cut(s) 388, 576, 730
BssAI RCCGGY 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 300
BssNI GRCGYC 2 cut(s) 41, 228
Bst4CI ACNGT 2 cut(s) 805, 943
BstACI GRCGYC 2 cut(s) 41, 228
BstBI TTCGAA 1 cut(s) 917
BstC8I GCNNGC 2 cut(s) 125, 484
BstDEI CTNAG 2 cut(s) 153, 172
BstF5I GGATG 4 cut(s) 86, 184, 738, 975
BstFNI CGCG 3 cut(s) 15, 79, 269
BstH2I RGCGCY 1 cut(s) 44
BstHHI GCGC 5 cut(s) 15, 43, 81, 269, 381
BstMAI GTCTC 1 cut(s) 782
BstMCI CGRYCG 2 cut(s) 215, 300
BstMWI GCNNNNNNNGC 2 cut(s) 21, 154
BstSCI CCNGG 1 cut(s) 236
BstUI CGCG 3 cut(s) 15, 79, 269
BstZI CGGCCG 1 cut(s) 297
BsuRI GGCC 5 cut(s) 148, 254, 299, 423, 784
BtgZI GCGATG 1 cut(s) 217
BtsCI GGATG 4 cut(s) 86, 184, 738, 975
BtsI GCAGTG 1 cut(s) 908
BtsIMutI CAGTG 3 cut(s) 381, 801, 908
Cac8I GCNNGC 2 cut(s) 125, 484
CfoI GCGC 5 cut(s) 15, 43, 81, 269, 381
Cfr10I RCCGGY 1 cut(s) 24
Cfr13I GGNCC 2 cut(s) 421, 782
CseI GACGC 1 cut(s) 236
CviAII CATG 4 cut(s) 10, 144, 695, 994
DdeI CTNAG 2 cut(s) 153, 172
DinI GGCGCC 1 cut(s) 42
DraI TTTAAA 1 cut(s) 829
EaeI YGGCCR 3 cut(s) 146, 252, 297
EagI CGGCCG 1 cut(s) 297
EciI GGCGGA 1 cut(s) 449
EclXI CGGCCG 1 cut(s) 297
Eco52I CGGCCG 1 cut(s) 297
EcoRI GAATTC 1 cut(s) 919
EgeI GGCGCC 1 cut(s) 42
EheI GGCGCC 1 cut(s) 42
FaeI CATG 4 cut(s) 13, 147, 698, 997
FaqI GGGAC 2 cut(s) 842, 890
FatI CATG 4 cut(s) 9, 143, 694, 993
FauI CCCGC 2 cut(s) 8, 202
FbaI TGATCA 1 cut(s) 955
FokI GGATG 4 cut(s) 73, 171, 725, 962
FspBI CTAG 1 cut(s) 794
GlaI GCGC 5 cut(s) 14, 42, 80, 268, 380
GsuI CTGGAG 1 cut(s) 205
HaeII RGCGCY 1 cut(s) 44
HaeIII GGCC 5 cut(s) 148, 254, 299, 423, 784
HapII CCGG 3 cut(s) 25, 238, 264
HgaI GACGC 1 cut(s) 236
HhaI GCGC 5 cut(s) 15, 43, 81, 269, 381
Hin1I GRCGYC 2 cut(s) 41, 228
Hin1II CATG 4 cut(s) 13, 147, 698, 997
Hin6I GCGC 5 cut(s) 13, 41, 79, 267, 379
HinP1I GCGC 5 cut(s) 13, 41, 79, 267, 379
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 4 cut(s) 260, 332, 416, 790
HpaI GTTAAC 1 cut(s) 30
HpaII CCGG 3 cut(s) 25, 238, 264
HphI GGTGA 4 cut(s) 45, 152, 271, 701
Hpy166II GTNNAC 3 cut(s) 30, 569, 986
Hpy188I TCNGA 5 cut(s) 212, 276, 344, 743, 748
Hpy188III TCNNGA 6 cut(s) 61, 323, 392, 413, 605, 924
Hpy8I GTNNAC 3 cut(s) 30, 569, 986
Hpy99I CGWCG 3 cut(s) 37, 230, 369
HpyAV CCTTC 4 cut(s) 60, 469, 716, 722
HpyCH4III ACNGT 2 cut(s) 805, 943
HpyCH4IV ACGT 2 cut(s) 32, 367
HpyCH4V TGCA 8 cut(s) 86, 127, 482, 503, 536, 646, 779, 971
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 154
HpyF3I CTNAG 2 cut(s) 153, 172
HpySE526I ACGT 2 cut(s) 32, 367
Hsp92I GRCGYC 2 cut(s) 41, 228
Hsp92II CATG 4 cut(s) 13, 147, 698, 997
HspAI GCGC 5 cut(s) 13, 41, 79, 267, 379
KasI GGCGCC 1 cut(s) 40
Ksp22I TGATCA 1 cut(s) 955
KspAI GTTAAC 1 cut(s) 30
LmnI GCTCC 2 cut(s) 21, 619
LweI GCATC 2 cut(s) 95, 766
MaeI CTAG 1 cut(s) 794
MaeII ACGT 2 cut(s) 32, 367
MaeIII GTNAC 1 cut(s) 799
MboII GAAGA 2 cut(s) 565, 568
MfeI CAATTG 1 cut(s) 498
MlsI TGGCCA 1 cut(s) 148
MluCI AATT 8 cut(s) 107, 498, 637, 670, 896, 919, 948, 960
MluNI TGGCCA 1 cut(s) 148
Mly113I GGCGCC 1 cut(s) 41
MlyI GAGTC 1 cut(s) 784
MmeI TCCRAC 2 cut(s) 114, 787
Mox20I TGGCCA 1 cut(s) 148
MscI TGGCCA 1 cut(s) 148
MseI TTAA 4 cut(s) 29, 402, 660, 828
Msp20I TGGCCA 1 cut(s) 148
MspI CCGG 3 cut(s) 25, 238, 264
MspR9I CCNGG 1 cut(s) 238
MunI CAATTG 1 cut(s) 498
Mva1269I GAATGC 1 cut(s) 724
MvnI CGCG 3 cut(s) 15, 79, 269
MwoI GCNNNNNNNGC 2 cut(s) 21, 154
NarI GGCGCC 1 cut(s) 41
NciI CCSGG 1 cut(s) 238
NlaIII CATG 4 cut(s) 13, 147, 698, 997
NlaIV GGNNCC 2 cut(s) 23, 42
NmeAIII GCCGAG 1 cut(s) 325
NmuCI GTSAC 1 cut(s) 799
NspV TTCGAA 1 cut(s) 917
PctI GAATGC 1 cut(s) 724
PfeI GAWTC 3 cut(s) 260, 332, 416
PflMI CCANNNNNTGG 1 cut(s) 430
Ple19I CGATCG 1 cut(s) 215
PleI GAGTC 1 cut(s) 784
PluTI GGCGCC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 784
PshBI ATTAAT 1 cut(s) 660
PspN4I GGNNCC 2 cut(s) 23, 42
PspPI GGNCC 2 cut(s) 421, 782
PvuI CGATCG 1 cut(s) 215
SaqAI TTAA 4 cut(s) 29, 402, 660, 828
Sau96I GGNCC 2 cut(s) 421, 782
SchI GAGTC 1 cut(s) 784
ScrFI CCNGG 1 cut(s) 238
SetI ASST 9 cut(s) 35, 141, 154, 159, 370, 456, 480, 714, 819
SfaNI GCATC 2 cut(s) 95, 766
SfoI GGCGCC 1 cut(s) 42
SfuI TTCGAA 1 cut(s) 917
SmlI CTYRAG 2 cut(s) 719, 818
SmoI CTYRAG 2 cut(s) 719, 818
Sse9I AATT 8 cut(s) 107, 498, 637, 670, 896, 919, 948, 960
SsiI CCGC 5 cut(s) 15, 47, 195, 434, 716
SspDI GGCGCC 1 cut(s) 40
SspMI CTAG 1 cut(s) 794
StyD4I CCNGG 1 cut(s) 236
TaaI ACNGT 2 cut(s) 805, 943
TaiI ACGT 2 cut(s) 35, 370
TaqI TCGA 5 cut(s) 114, 204, 364, 917, 923
TasI AATT 8 cut(s) 107, 498, 637, 670, 896, 919, 948, 960
TfiI GAWTC 3 cut(s) 260, 332, 416
Tru1I TTAA 4 cut(s) 29, 402, 660, 828
Tru9I TTAA 4 cut(s) 29, 402, 660, 828
TscAI CASTG 3 cut(s) 388, 808, 915
TseFI GTSAC 1 cut(s) 799
Tsp45I GTSAC 1 cut(s) 799
TspDTI ATGAA 2 cut(s) 361, 955
TspGWI ACGGA 1 cut(s) 366
TspRI CASTG 3 cut(s) 388, 808, 915
Van91I CCANNNNNTGG 1 cut(s) 430
VspI ATTAAT 1 cut(s) 660
XapI RAATTY 2 cut(s) 919, 960
XspI CTAG 1 cut(s) 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.