Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0011169

Physical Location & Seq

Genomic Coordinates Reverse (-)

37106081 .. 37106551

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG194200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGACGTCGGAGGAAGAAGAGGCGCTCTGAGCAGGCGTCAGAAAGCACAGCACCGGAAAGTGGAAGGACATCCAAAAAGACCCCGAGTTCAACCCCTTCCTCTCCGAGCTGACGTCAGAAACTCCCGCCACCGTTCAACGCCGAAGCTCATCAACCTCAGCCCCTCCTTGACTGCCTTTCCTAAAAAAGTTGAGTTTCGCGGTCGGAGCTTCTACAACTTCCGGCATCCTACTGCTCTCACTCTCAGAGCTTCTTCTGTTGGCACCGCCGTAGCTCTGACCACTGCGCCTTTCTTCAAGAAGACATACCCTCTTGAGCGAACTGACTTACACTCGAAATGGTGCTCCTCGTCGGACATGGCTGGGCTCCGATCTCTGAGAGAAAGAAAGAGAAATGGAATTGATCAAAGGAGGAGAGACGAGAAGCATCAGAGAAAGGGATTGCAGCGGTCTGATTCGCCCATGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004556 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016160 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046352 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase

Protein Analysis

156

Amino Acids

17.94

Weight (kDa)

11.77

Isoelectric Point (pI)

68.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38500
fragaria_vesca	FvH4_6g10130
malus_domestica	MD12G1185800.v1.1
prunus_persica	Prupe.6G291400_v2.0.a1
pyrus_communis	pycom12g17450
rosa_chinensis	RchiOBHm_Chr3g0460831
rosa_laevigata	RLG00000018120 RLG00000024976
rosa_multiflora	Rmu_sc0007678.1_g000011
rosa_roxburghii	Rroxscaffold_5G00381390 Rroxscaffold_6G00419180
rosa_rugosa	Rorug02G0156100 Rorug03G0046800
rosa_samantha	Rh1AG194200 Rh3AG103900 Rh3BG107500 Rh3CG109400 Rh3DG109300 Rh7DG284200
rosa_wichuraiana	Rw3G008840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	9, 117
AccB1I	GGYRCC	1 cut(s)	263
AccII	CGCG	1 cut(s)	201
AciI	CCGC	4 cut(s)	127, 201, 267, 448
AcyI	GRCGYC	3 cut(s)	6, 37, 114
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	3 cut(s)	92, 138, 298
AluBI	AGCT	5 cut(s)	110, 148, 210, 251, 275
AluI	AGCT	5 cut(s)	110, 148, 210, 251, 275
Alw21I	GWGCWC	1 cut(s)	347
Alw26I	GTCTC	1 cut(s)	411
Ama87I	CYCGRG	1 cut(s)	84
AoxI	GGCC	1 cut(s)	465
ApeKI	GCWGC	1 cut(s)	445
AspLEI	GCGC	2 cut(s)	26, 289
AvaI	CYCGRG	1 cut(s)	84
BanI	GGYRCC	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	369
BbsI	GAAGAC	1 cut(s)	308
Bbv12I	GWGCWC	1 cut(s)	347
BbvCI	CCTCAGC	1 cut(s)	158
BbvI	GCAGC	1 cut(s)	457
BceAI	ACGGC	1 cut(s)	254
BclI	TGATCA	1 cut(s)	403
BcoDI	GTCTC	1 cut(s)	411
BfoI	RGCGCY	1 cut(s)	27
BisI	GCNGC	1 cut(s)	446
BlsI	GCNGC	1 cut(s)	447
BmeT110I	CYCGRG	1 cut(s)	84
BmiI	GGNNCC	2 cut(s)	265, 368
BmsI	GCATC	2 cut(s)	235, 436
BpiI	GAAGAC	1 cut(s)	308
Bpu10I	CCTNAGC	1 cut(s)	158
BpuEI	CTTGAG	1 cut(s)	335
BsaHI	GRCGYC	3 cut(s)	6, 37, 114
BsaJI	CCNNGG	1 cut(s)	462
BsaWI	WCCGGW	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
BseDI	CCNNGG	1 cut(s)	462
BseGI	GGATG	2 cut(s)	70, 226
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMII	CTCAG	4 cut(s)	20, 172, 259, 368
BseRI	GAGGAG	2 cut(s)	337, 427
BseXI	GCAGC	1 cut(s)	457
BseYI	CCCAGC	1 cut(s)	362
Bsh1236I	CGCG	1 cut(s)	201
Bsh1285I	CGRYCG	1 cut(s)	205
BshFI	GGCC	1 cut(s)	467
BshNI	GGYRCC	1 cut(s)	263
BsiEI	CGRYCG	1 cut(s)	205
BsiHKAI	GWGCWC	1 cut(s)	347
BsiHKCI	CYCGRG	1 cut(s)	84
BsiSI	CCGG	2 cut(s)	55, 223
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	1 cut(s)	411
BsmBI	CGTCTC	1 cut(s)	411
BsnI	GGCC	1 cut(s)	467
BsoBI	CYCGRG	1 cut(s)	84
Bsp1286I	GDGCHC	2 cut(s)	347, 369
Bsp143I	GATC	2 cut(s)	371, 403
Bsp19I	CCATGG	1 cut(s)	462
BspACI	CCGC	4 cut(s)	127, 201, 267, 448
BspANI	GGCC	1 cut(s)	467
BspCNI	CTCAG	4 cut(s)	21, 171, 258, 369
BspFNI	CGCG	1 cut(s)	201
BspLI	GGNNCC	2 cut(s)	265, 368
BspT107I	GGYRCC	1 cut(s)	263
BssECI	CCNNGG	1 cut(s)	462
BssMI	GATC	2 cut(s)	371, 403
BssNI	GRCGYC	3 cut(s)	6, 37, 114
BssT1I	CCWWGG	1 cut(s)	462
Bst4CI	ACNGT	1 cut(s)	134
Bst6I	CTCTTC	1 cut(s)	13
BstACI	GRCGYC	3 cut(s)	6, 37, 114
BstC8I	GCNNGC	1 cut(s)	35
BstDEI	CTNAG	4 cut(s)	29, 158, 245, 377
BstDSI	CCRYGG	1 cut(s)	462
BstF5I	GGATG	2 cut(s)	70, 226
BstFNI	CGCG	1 cut(s)	201
BstH2I	RGCGCY	1 cut(s)	27
BstHHI	GCGC	2 cut(s)	26, 289
BstKTI	GATC	2 cut(s)	374, 406
BstMAI	GTCTC	1 cut(s)	411
BstMBI	GATC	2 cut(s)	371, 403
BstMCI	CGRYCG	1 cut(s)	205
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 207
BstUI	CGCG	1 cut(s)	201
BstV1I	GCAGC	1 cut(s)	457
BstV2I	GAAGAC	1 cut(s)	308
BsuRI	GGCC	1 cut(s)	467
BtgI	CCRYGG	1 cut(s)	462
BtsCI	GGATG	2 cut(s)	70, 226
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	35
CfoI	GCGC	2 cut(s)	26, 289
CseI	GACGC	1 cut(s)	26
CviAII	CATG	2 cut(s)	358, 463
CviJI	RGCY	9 cut(s)	110, 148, 162, 210, 251, 275, 362, 367, 467
CviKI_1	RGCY	9 cut(s)	110, 148, 162, 210, 251, 275, 362, 367, 467
DdeI	CTNAG	4 cut(s)	29, 158, 245, 377
DpnI	GATC	2 cut(s)	373, 405
DpnII	GATC	2 cut(s)	371, 403
Eam1104I	CTCTTC	1 cut(s)	13
EarI	CTCTTC	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	462
Eco24I	GRGCYC	1 cut(s)	369
Eco88I	CYCGRG	1 cut(s)	84
EcoT14I	CCWWGG	1 cut(s)	462
EcoT38I	GRGCYC	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	462
Esp3I	CGTCTC	1 cut(s)	411
FaeI	CATG	2 cut(s)	361, 466
FaiI	YATR	3 cut(s)	307, 359, 464
FatI	CATG	2 cut(s)	357, 462
FauI	CCCGC	1 cut(s)	134
FbaI	TGATCA	1 cut(s)	403
Fnu4HI	GCNGC	1 cut(s)	446
FokI	GGATG	2 cut(s)	57, 213
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	1 cut(s)	446
GlaI	GCGC	2 cut(s)	25, 288
GluI	GCNGC	1 cut(s)	446
GsaI	CCCAGC	1 cut(s)	366
HaeII	RGCGCY	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	467
HapII	CCGG	2 cut(s)	55, 223
HgaI	GACGC	1 cut(s)	26
HhaI	GCGC	2 cut(s)	26, 289
Hin1I	GRCGYC	3 cut(s)	6, 37, 114
Hin1II	CATG	2 cut(s)	361, 466
Hin6I	GCGC	2 cut(s)	24, 287
HinP1I	GCGC	2 cut(s)	24, 287
HinfI	GANTC	1 cut(s)	455
HpaII	CCGG	2 cut(s)	55, 223
Hpy188III	TCNNGA	2 cut(s)	298, 314
Hpy99I	CGWCG	2 cut(s)	11, 355
HpyAV	CCTTC	2 cut(s)	59, 107
HpyCH4III	ACNGT	1 cut(s)	134
HpyCH4IV	ACGT	2 cut(s)	6, 114
HpyCH4V	TGCA	1 cut(s)	445
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 207
HpyF3I	CTNAG	4 cut(s)	29, 158, 245, 377
HpySE526I	ACGT	2 cut(s)	6, 114
Hsp92I	GRCGYC	3 cut(s)	6, 37, 114
Hsp92II	CATG	2 cut(s)	361, 466
HspAI	GCGC	2 cut(s)	24, 287
Ksp22I	TGATCA	1 cut(s)	403
Kzo9I	GATC	2 cut(s)	371, 403
LmnI	GCTCC	3 cut(s)	207, 350, 372
LpnPI	CCDG	4 cut(s)	19, 68, 236, 348
Lsp1109I	GCAGC	1 cut(s)	457
LweI	GCATC	2 cut(s)	235, 436
MaeII	ACGT	2 cut(s)	6, 114
MalI	GATC	2 cut(s)	373, 405
MboI	GATC	2 cut(s)	371, 403
MboII	GAAGA	5 cut(s)	27, 30, 246, 286, 313
MhlI	GDGCHC	2 cut(s)	347, 369
MluCI	AATT	1 cut(s)	399
MmeI	TCCRAC	2 cut(s)	185, 333
MnlI	CCTC	8 cut(s)	5, 14, 111, 167, 175, 321, 358, 405
MspA1I	CMGCKG	1 cut(s)	448
MspI	CCGG	2 cut(s)	55, 223
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	2 cut(s)	30, 207
NcoI	CCATGG	1 cut(s)	462
NdeII	GATC	2 cut(s)	371, 403
NlaIII	CATG	2 cut(s)	361, 466
NlaIV	GGNNCC	2 cut(s)	265, 368
PfeI	GAWTC	1 cut(s)	455
PkrI	GCNGC	1 cut(s)	447
PspFI	CCCAGC	1 cut(s)	362
PspN4I	GGNNCC	2 cut(s)	265, 368
SatI	GCNGC	1 cut(s)	446
Sau3AI	GATC	2 cut(s)	371, 403
SduI	GDGCHC	2 cut(s)	347, 369
SetI	ASST	8 cut(s)	9, 112, 117, 150, 159, 212, 253, 277
SfaNI	GCATC	2 cut(s)	235, 436
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	1 cut(s)	399
SsiI	CCGC	4 cut(s)	127, 201, 267, 448
StyI	CCWWGG	1 cut(s)	462
TaaI	ACNGT	1 cut(s)	134
TaiI	ACGT	2 cut(s)	9, 117
TaqI	TCGA	1 cut(s)	335
TasI	AATT	1 cut(s)	399
TfiI	GAWTC	1 cut(s)	455
TscAI	CASTG	1 cut(s)	289
TseI	GCWGC	1 cut(s)	445
TspRI	CASTG	1 cut(s)	289
ZraI	GACGTC	2 cut(s)	7, 115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.