Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0011169

Physical Location & Seq

Genomic Coordinates Reverse (-)

25506859 .. 25507349

Gene Structure 491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018120

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGGAAATCCGAAGCAAAAATGGACGTCGGAGGAAGAAGAGGCGCTCCGAGCAAGCGTTAGAAAGCATGGCACCGGAAAGTGGAAGGACATCCAGAAAGACCCCGAGTTCAACCCCTTCCTCTCCGAGCCGATCTTCTGCAACTTCCGGCATCCTACTGCTCTCACTCTCAGAGCTTCTTCTACTGGCACCACCGTAGCTGCGACCACCGCGCCTTTCTTCAAGAAGACATATCCTCTTGAGCAAACTAACTTACACTCGAAATGGTGCTCCTCGTCGGACATGGCTAGGCTCCAATCTCTGAGAGAAAGAAAGAGAAATGGAATTGATCAAAGGAGGAGAGACGAGAAGCGTCAGAGAAAGGGATTGCAGCGGTCTGATTCGCCGATGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003697 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0031974 GO:0031981 GO:0042162 GO:0042802 GO:0042803 GO:0043047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0046983 GO:0070013 GO:0097159 GO:0098847 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

132

Amino Acids

15.14

Weight (kDa)

10.19

Isoelectric Point (pI)

62.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	5 - 33	1.6e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38500
fragaria_vesca	FvH4_6g10130
malus_domestica	MD12G1185800.v1.1
prunus_persica	Prupe.6G291400_v2.0.a1
pyrus_communis	pycom12g17450
rosa_chinensis	RchiOBHm_Chr3g0460831
rosa_laevigata	RLG00000018120 RLG00000024976
rosa_multiflora	Rmu_sc0007678.1_g000011
rosa_roxburghii	Rroxscaffold_5G00381390 Rroxscaffold_6G00419180
rosa_rugosa	Rorug02G0156100 Rorug03G0046800
rosa_samantha	Rh1AG194200 Rh3AG103900 Rh3BG107500 Rh3CG109400 Rh3DG109300 Rh7DG284200
rosa_wichuraiana	Rw3G008840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	29
AccB1I	GGYRCC	2 cut(s)	71, 188
AccII	CGCG	1 cut(s)	212
AciI	CCGC	2 cut(s)	210, 373
AcyI	GRCGYC	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	81
AgsI	TTSAA	2 cut(s)	112, 223
AluBI	AGCT	2 cut(s)	176, 200
AluI	AGCT	2 cut(s)	176, 200
Alw21I	GWGCWC	1 cut(s)	272
Alw26I	GTCTC	1 cut(s)	336
Ama87I	CYCGRG	1 cut(s)	104
ApeKI	GCWGC	2 cut(s)	200, 370
AspLEI	GCGC	2 cut(s)	46, 214
AvaI	CYCGRG	1 cut(s)	104
BanI	GGYRCC	2 cut(s)	71, 188
BbsI	GAAGAC	1 cut(s)	233
Bbv12I	GWGCWC	1 cut(s)	272
BbvI	GCAGC	2 cut(s)	187, 382
BccI	CCATC	1 cut(s)	382
BclI	TGATCA	1 cut(s)	328
BcoDI	GTCTC	1 cut(s)	336
BfaI	CTAG	1 cut(s)	288
BfoI	RGCGCY	1 cut(s)	47
BisI	GCNGC	2 cut(s)	201, 371
BlsI	GCNGC	2 cut(s)	202, 372
BmeT110I	CYCGRG	1 cut(s)	104
BmiI	GGNNCC	3 cut(s)	73, 190, 293
BmsI	GCATC	1 cut(s)	160
BpiI	GAAGAC	1 cut(s)	233
BpuEI	CTTGAG	1 cut(s)	260
BsaHI	GRCGYC	1 cut(s)	26
BsaWI	WCCGGW	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse1I	ACTGG	1 cut(s)	190
BseGI	GGATG	2 cut(s)	90, 151
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseMII	CTCAG	2 cut(s)	184, 293
BseNI	ACTGG	1 cut(s)	190
BseRI	GAGGAG	2 cut(s)	262, 352
BseXI	GCAGC	2 cut(s)	187, 382
Bsh1236I	CGCG	1 cut(s)	212
BshNI	GGYRCC	2 cut(s)	71, 188
BsiHKAI	GWGCWC	1 cut(s)	272
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	2 cut(s)	75, 148
BslI	CCNNNNNNNGG	1 cut(s)	81
BsmAI	GTCTC	1 cut(s)	336
BsmBI	CGTCTC	1 cut(s)	336
BsoBI	CYCGRG	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp143I	GATC	2 cut(s)	132, 328
BspACI	CCGC	2 cut(s)	210, 373
BspCNI	CTCAG	2 cut(s)	183, 294
BspFNI	CGCG	1 cut(s)	212
BspLI	GGNNCC	3 cut(s)	73, 190, 293
BspT107I	GGYRCC	2 cut(s)	71, 188
BsrI	ACTGG	1 cut(s)	190
BssMI	GATC	2 cut(s)	132, 328
BssNI	GRCGYC	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	196
Bst6I	CTCTTC	1 cut(s)	33
BstACI	GRCGYC	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	2 cut(s)	170, 302
BstF5I	GGATG	2 cut(s)	90, 151
BstFNI	CGCG	1 cut(s)	212
BstH2I	RGCGCY	1 cut(s)	47
BstHHI	GCGC	2 cut(s)	46, 214
BstKTI	GATC	2 cut(s)	135, 331
BstMAI	GTCTC	1 cut(s)	336
BstMBI	GATC	2 cut(s)	132, 328
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 209
BstUI	CGCG	1 cut(s)	212
BstV1I	GCAGC	2 cut(s)	187, 382
BstV2I	GAAGAC	1 cut(s)	233
BtsCI	GGATG	2 cut(s)	90, 151
Cac8I	GCNNGC	1 cut(s)	55
CfoI	GCGC	2 cut(s)	46, 214
CseI	GACGC	1 cut(s)	341
CviAII	CATG	2 cut(s)	68, 283
CviJI	RGCY	6 cut(s)	130, 176, 200, 287, 292, 393
CviKI_1	RGCY	6 cut(s)	130, 176, 200, 287, 292, 393
DdeI	CTNAG	2 cut(s)	170, 302
DpnI	GATC	2 cut(s)	134, 330
DpnII	GATC	2 cut(s)	132, 328
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Eco88I	CYCGRG	1 cut(s)	104
Esp3I	CGTCTC	1 cut(s)	336
FaeI	CATG	2 cut(s)	71, 286
FaiI	YATR	3 cut(s)	69, 232, 284
FatI	CATG	2 cut(s)	67, 282
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	2 cut(s)	201, 371
FokI	GGATG	2 cut(s)	77, 138
Fsp4HI	GCNGC	2 cut(s)	201, 371
FspBI	CTAG	1 cut(s)	288
GlaI	GCGC	2 cut(s)	45, 213
GluI	GCNGC	2 cut(s)	201, 371
HaeII	RGCGCY	1 cut(s)	47
HapII	CCGG	2 cut(s)	75, 148
HgaI	GACGC	1 cut(s)	341
HhaI	GCGC	2 cut(s)	46, 214
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	2 cut(s)	71, 286
Hin6I	GCGC	2 cut(s)	44, 212
HinP1I	GCGC	2 cut(s)	44, 212
HinfI	GANTC	1 cut(s)	380
HpaII	CCGG	2 cut(s)	75, 148
Hpy188I	TCNGA	9 cut(s)	12, 31, 50, 127, 173, 280, 303, 357, 379
Hpy188III	TCNNGA	3 cut(s)	94, 223, 239
Hpy99I	CGWCG	2 cut(s)	31, 280
HpyAV	CCTTC	2 cut(s)	79, 127
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	2 cut(s)	141, 370
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 209
HpyF3I	CTNAG	2 cut(s)	170, 302
HpySE526I	ACGT	1 cut(s)	26
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	2 cut(s)	71, 286
HspAI	GCGC	2 cut(s)	44, 212
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	132, 328
LmnI	GCTCC	3 cut(s)	51, 275, 297
LpnPI	CCDG	4 cut(s)	88, 107, 161, 171
Lsp1109I	GCAGC	2 cut(s)	187, 382
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	1 cut(s)	288
MaeII	ACGT	1 cut(s)	26
MalI	GATC	2 cut(s)	134, 330
MboI	GATC	2 cut(s)	132, 328
MboII	GAAGA	6 cut(s)	47, 50, 127, 171, 211, 238
MhlI	GDGCHC	1 cut(s)	272
MluCI	AATT	1 cut(s)	324
MmeI	TCCRAC	2 cut(s)	9, 258
MnlI	CCTC	6 cut(s)	25, 34, 131, 246, 283, 330
MspA1I	CMGCKG	1 cut(s)	373
MspI	CCGG	2 cut(s)	75, 148
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	2 cut(s)	50, 209
NdeII	GATC	2 cut(s)	132, 328
NlaIII	CATG	2 cut(s)	71, 286
NlaIV	GGNNCC	3 cut(s)	73, 190, 293
PfeI	GAWTC	1 cut(s)	380
PkrI	GCNGC	2 cut(s)	202, 372
PspN4I	GGNNCC	3 cut(s)	73, 190, 293
SatI	GCNGC	2 cut(s)	201, 371
Sau3AI	GATC	2 cut(s)	132, 328
SduI	GDGCHC	1 cut(s)	272
SetI	ASST	3 cut(s)	29, 178, 202
SfaNI	GCATC	1 cut(s)	160
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	1 cut(s)	324
SsiI	CCGC	2 cut(s)	210, 373
SspMI	CTAG	1 cut(s)	288
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	1 cut(s)	29
TaqI	TCGA	1 cut(s)	260
TasI	AATT	1 cut(s)	324
TfiI	GAWTC	1 cut(s)	380
TseI	GCWGC	2 cut(s)	200, 370
XspI	CTAG	1 cut(s)	288
ZraI	GACGTC	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.