Rw3G008840

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0011169
Physical Location & Seq
Forward (+)
8199561 .. 8201354
1794 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G008840.1

Sequence Viewer

Length: 990 bp
ATGCACCACAGAAGCCGATTAACCACCGCGGTGCCACCCCCTTCTCCGATCCCAACAGCTAAAGGCTCCCGCTCCGCAGCCTCCGAAACCTTCACGCATTTCCTCGACAACTGCCTCAAGATCCCCGAGCTCATCGCATTGCCGCCTGCCCACCTCTCCAGCACCGGCCCACGTCACCAGATCCCCGCTTACGTCGACTTCCAATCCCTCTCCGCCGACTCCATCGCGCGCCTCCTCGTCTCGGCCAAGCAACTCGGAGCGTTTCGGATCATCGGTCATGGAATATCAACCGATGAGTTGAGGTCCGTGGTTCAAGAAGCCGAATCCATTTTTGGAAATGCCGATCATCAATCTAGACGTTTCGTTGAGGGCGTTGGTGATCGTGAGGAGATTGCTTGGGTTCGGGATCAAAAGAGCAAATCAGACCAACGATATGAGAATTTTTGTAACAATATGGATAAGGTTGCGAGTAAAATTGAAGCGATTGCAGAACAAATGAGTGAAGTTTTCTATAAAAATGCGAAAGCGGAATTTGTGAGAAGAAGCGAAGAGAAAGATTGGGTTTTTAGGCTATACAGATACAATGATAATACAATGGAGCAAAACCACAGGAATTCACTGAATGAGATCGACTGTGATCGTGAGTGTGATGATCATGGTTTTTGCATCCACCTTCCGCTAGAACATTCTCAGTTCTCCATTCAATCAGAGCGAGGTCCATTGTCTTTTGATGCAGGCCCTGAAACGCTTGTTGTTACAGTCGGAAAGCAGCTAGAGGGATTTAAATGTGTTTCAGGGGAAATGATCTTTGTGCCTGACATAAGCAGAAGCCAAGCCTCTTTCTCCTTGCAACTCAAAGTTCCATTTTCGTCTAATTTAAGAAAAAATTCCAAGACAGTTTCGATTGTTGATCAAGTTTTCATTGCAATCTTCCTCTGCTTATTATACAAAGCTGTGGTGTTCATGTACGCTTACATTACAACTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

329

Amino Acids

37.14

Weight (kDa)

6.27

Isoelectric Point (pI)

50.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011169)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38500
fragaria_vesca FvH4_6g10130
malus_domestica MD12G1185800.v1.1
prunus_persica Prupe.6G291400_v2.0.a1
pyrus_communis pycom12g17450
rosa_chinensis RchiOBHm_Chr3g0460831
rosa_laevigata RLG00000018120 RLG00000024976
rosa_multiflora Rmu_sc0007678.1_g000011
rosa_roxburghii Rroxscaffold_5G00381390 Rroxscaffold_6G00419180
rosa_rugosa Rorug02G0156100 Rorug03G0046800
rosa_samantha Rh1AG194200 Rh3AG103900 Rh3BG107500 Rh3CG109400 Rh3DG109300 Rh7DG284200
rosa_wichuraiana Rw3G008840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 31
AccBSI CCGCTC 1 cut(s) 72
AccI GTMKAC 1 cut(s) 195
AccII CGCG 3 cut(s) 29, 227, 229
AciI CCGC 9 cut(s) 27, 29, 70, 75, 143, 186, 213, 527, 677
AclWI GGATC 5 cut(s) 43, 115, 175, 275, 414
AcoI YGGCCR 1 cut(s) 243
AcsI RAATTY 4 cut(s) 439, 530, 613, 886
AfaI GTAC 1 cut(s) 968
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 3 cut(s) 314, 479, 704
AjiI CACGTC 1 cut(s) 173
AjuI GAANNNNNNNTTGG 2 cut(s) 315, 347
AleI CACNNNNGTG 1 cut(s) 29
AluBI AGCT 4 cut(s) 59, 130, 772, 953
AluI AGCT 4 cut(s) 59, 130, 772, 953
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 1 cut(s) 244
AlwI GGATC 5 cut(s) 43, 115, 175, 275, 414
AlwNI CAGNNNCTG 1 cut(s) 740
Ama87I CYCGRG 1 cut(s) 125
AoxI GGCC 3 cut(s) 166, 243, 736
ApeKI GCWGC 2 cut(s) 77, 769
ApoI RAATTY 4 cut(s) 439, 530, 613, 886
Asp700I GAANNNNTTC 1 cut(s) 886
AspLEI GCGC 2 cut(s) 229, 231
AspS9I GGNCC 4 cut(s) 167, 303, 716, 737
AsuHPI GGTGA 2 cut(s) 167, 389
AvaI CYCGRG 1 cut(s) 125
AvaII GGWCC 2 cut(s) 303, 716
BanI GGYRCC 1 cut(s) 31
BanII GRGCYC 1 cut(s) 132
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 2 cut(s) 89, 781
BccI CCATC 1 cut(s) 230
BclI TGATCA 2 cut(s) 652, 910
BcoDI GTCTC 1 cut(s) 244
BfaI CTAG 3 cut(s) 354, 680, 773
BisI GCNGC 3 cut(s) 78, 143, 770
BlsI GCNGC 3 cut(s) 79, 144, 771
Bme18I GGWCC 2 cut(s) 303, 716
BmeT110I CYCGRG 1 cut(s) 125
BmgBI CACGTC 1 cut(s) 173
BmgT120I GGNCC 4 cut(s) 167, 303, 716, 737
BmiI GGNNCC 2 cut(s) 33, 67
BmsI GCATC 2 cut(s) 675, 721
BpmI CTGGAG 1 cut(s) 142
BpuEI CTTGAG 1 cut(s) 101
BsaJI CCNNGG 2 cut(s) 27, 306
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse118I RCCGGY 1 cut(s) 164
Bse3DI GCAATG 2 cut(s) 137, 921
BseDI CCNNGG 2 cut(s) 27, 306
BseGI GGATG 1 cut(s) 666
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMI GCAATG 2 cut(s) 137, 921
BseMII CTCAG 1 cut(s) 704
BsePI GCGCGC 1 cut(s) 227
BseRI GAGGAG 2 cut(s) 224, 401
BseXI GCAGC 2 cut(s) 89, 781
Bsh1236I CGCG 3 cut(s) 29, 227, 229
BshFI GGCC 3 cut(s) 168, 245, 738
BshNI GGYRCC 1 cut(s) 31
BsiHKAI GWGCWC 1 cut(s) 132
BsiHKCI CYCGRG 1 cut(s) 125
BsiSI CCGG 1 cut(s) 165
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 1 cut(s) 244
BsmBI CGTCTC 1 cut(s) 244
BsnI GGCC 3 cut(s) 168, 245, 738
BsoBI CYCGRG 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 132
BspACI CCGC 9 cut(s) 27, 29, 70, 75, 143, 186, 213, 527, 677
BspANI GGCC 3 cut(s) 168, 245, 738
BspCNI CTCAG 1 cut(s) 703
BspFNI CGCG 3 cut(s) 29, 227, 229
BspLI GGNNCC 2 cut(s) 33, 67
BspPI GGATC 5 cut(s) 43, 115, 175, 275, 414
BspT107I GGYRCC 1 cut(s) 31
BsrBI CCGCTC 1 cut(s) 72
BsrDI GCAATG 2 cut(s) 137, 921
BsrFI RCCGGY 1 cut(s) 164
BssAI RCCGGY 1 cut(s) 164
BssECI CCNNGG 2 cut(s) 27, 306
BssHII GCGCGC 1 cut(s) 227
Bst4CI ACNGT 3 cut(s) 635, 760, 898
Bst6I CTCTTC 1 cut(s) 543
BstC8I GCNNGC 3 cut(s) 147, 229, 736
BstDEI CTNAG 1 cut(s) 690
BstDSI CCRYGG 2 cut(s) 27, 306
BstF5I GGATG 1 cut(s) 666
BstFNI CGCG 3 cut(s) 29, 227, 229
BstHHI GCGC 2 cut(s) 229, 231
BstMAI GTCTC 1 cut(s) 244
BstUI CGCG 3 cut(s) 29, 227, 229
BstV1I GCAGC 2 cut(s) 89, 781
BstX2I RGATCY 2 cut(s) 120, 180
BstYI RGATCY 2 cut(s) 120, 180
BsuRI GGCC 3 cut(s) 168, 245, 738
BtgI CCRYGG 2 cut(s) 27, 306
BtgZI GCGATG 2 cut(s) 118, 208
BtrI CACGTC 1 cut(s) 173
BtsCI GGATG 1 cut(s) 666
BtsIMutI CAGTG 1 cut(s) 617
Cac8I GCNNGC 3 cut(s) 147, 229, 736
CaiI CAGNNNCTG 1 cut(s) 740
CfoI GCGC 2 cut(s) 229, 231
Cfr10I RCCGGY 1 cut(s) 164
Cfr13I GGNCC 4 cut(s) 167, 303, 716, 737
Cfr42I CCGCGG 1 cut(s) 30
Csp6I GTAC 1 cut(s) 967
CviAII CATG 3 cut(s) 278, 656, 964
CviQI GTAC 1 cut(s) 967
DdeI CTNAG 1 cut(s) 690
DraI TTTAAA 1 cut(s) 784
EaeI YGGCCR 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 543
EarI CTCTTC 1 cut(s) 543
EciI GGCGGA 1 cut(s) 202
Ecl136II GAGCTC 1 cut(s) 130
Eco24I GRGCYC 1 cut(s) 132
Eco47I GGWCC 2 cut(s) 303, 716
Eco53kI GAGCTC 1 cut(s) 130
Eco88I CYCGRG 1 cut(s) 125
EcoICRI GAGCTC 1 cut(s) 130
EcoO109I RGGNCCY 1 cut(s) 737
EcoRI GAATTC 1 cut(s) 613
EcoT38I GRGCYC 1 cut(s) 132
Esp3I CGTCTC 1 cut(s) 244
FaeI CATG 3 cut(s) 281, 659, 967
FatI CATG 3 cut(s) 277, 655, 963
FauI CCCGC 2 cut(s) 77, 193
FbaI TGATCA 2 cut(s) 652, 910
FblI GTMKAC 1 cut(s) 195
Fnu4HI GCNGC 3 cut(s) 78, 143, 770
FokI GGATG 1 cut(s) 653
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 3 cut(s) 78, 143, 770
FspBI CTAG 3 cut(s) 354, 680, 773
GlaI GCGC 2 cut(s) 228, 230
GluI GCNGC 3 cut(s) 78, 143, 770
GsuI CTGGAG 1 cut(s) 142
HaeIII GGCC 3 cut(s) 168, 245, 738
HapII CCGG 1 cut(s) 165
HhaI GCGC 2 cut(s) 229, 231
Hin1II CATG 3 cut(s) 281, 659, 967
Hin6I GCGC 2 cut(s) 227, 229
HinP1I GCGC 2 cut(s) 227, 229
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 2 cut(s) 218, 323
HpaII CCGG 1 cut(s) 165
HphI GGTGA 2 cut(s) 167, 389
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 7 cut(s) 48, 85, 257, 267, 424, 709, 764
Hpy188III TCNNGA 6 cut(s) 118, 314, 354, 383, 404, 641
Hpy8I GTNNAC 1 cut(s) 196
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 3 cut(s) 51, 100, 683
HpyCH4III ACNGT 3 cut(s) 635, 760, 898
HpyCH4IV ACGT 3 cut(s) 172, 192, 358
HpyCH4V TGCA 6 cut(s) 4, 488, 666, 734, 850, 926
HpyF3I CTNAG 1 cut(s) 690
HpySE526I ACGT 3 cut(s) 172, 192, 358
Hsp92II CATG 3 cut(s) 281, 659, 967
HspAI GCGC 2 cut(s) 227, 229
Ksp22I TGATCA 2 cut(s) 652, 910
KspI CCGCGG 1 cut(s) 30
LmnI GCTCC 4 cut(s) 71, 77, 257, 598
LpnPI CCDG 9 cut(s) 159, 172, 178, 191, 595, 720, 753, 780, 828
Lsp1109I GCAGC 2 cut(s) 89, 781
LweI GCATC 2 cut(s) 675, 721
MaeI CTAG 3 cut(s) 354, 680, 773
MaeII ACGT 3 cut(s) 172, 192, 358
MaeIII GTNAC 3 cut(s) 173, 446, 754
MbiI CCGCTC 1 cut(s) 72
MboII GAAGA 3 cut(s) 552, 560, 922
MflI RGATCY 2 cut(s) 120, 180
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 6 cut(s) 439, 474, 530, 613, 874, 886
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 1 cut(s) 742
MroXI GAANNNNTTC 1 cut(s) 886
MseI TTAA 3 cut(s) 20, 783, 878
MslI CAYNNNNRTG 1 cut(s) 29
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 1 cut(s) 165
MvnI CGCG 3 cut(s) 29, 227, 229
NlaIII CATG 3 cut(s) 281, 659, 967
NlaIV GGNNCC 2 cut(s) 33, 67
NmeAIII GCCGAG 1 cut(s) 221
NmuCI GTSAC 1 cut(s) 173
OliI CACNNNNGTG 1 cut(s) 29
PauI GCGCGC 1 cut(s) 227
PcsI WCGNNNNNNNCGW 1 cut(s) 369
PdmI GAANNNNTTC 1 cut(s) 886
PfeI GAWTC 1 cut(s) 323
PkrI GCNGC 3 cut(s) 79, 144, 771
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
Psp124BI GAGCTC 1 cut(s) 132
PspN4I GGNNCC 2 cut(s) 33, 67
PspPI GGNCC 4 cut(s) 167, 303, 716, 737
PstNI CAGNNNCTG 1 cut(s) 740
PsuI RGATCY 2 cut(s) 120, 180
PteI GCGCGC 1 cut(s) 227
RsaI GTAC 1 cut(s) 968
RsaNI GTAC 1 cut(s) 967
RseI CAYNNNNRTG 1 cut(s) 29
SacI GAGCTC 1 cut(s) 132
SacII CCGCGG 1 cut(s) 30
SalI GTCGAC 1 cut(s) 194
SaqAI TTAA 3 cut(s) 20, 783, 878
SatI GCNGC 3 cut(s) 78, 143, 770
Sau96I GGNCC 4 cut(s) 167, 303, 716, 737
SchI GAGTC 1 cut(s) 212
SduI GDGCHC 1 cut(s) 132
SfaNI GCATC 2 cut(s) 675, 721
Sfr303I CCGCGG 1 cut(s) 30
SgrBI CCGCGG 1 cut(s) 30
SinI GGWCC 2 cut(s) 303, 716
SmiI ATTTAAAT 1 cut(s) 784
SmiMI CAYNNNNRTG 1 cut(s) 29
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 6 cut(s) 439, 474, 530, 613, 874, 886
SsiI CCGC 9 cut(s) 27, 29, 70, 75, 143, 186, 213, 527, 677
SspMI CTAG 3 cut(s) 354, 680, 773
SstI GAGCTC 1 cut(s) 132
SwaI ATTTAAAT 1 cut(s) 784
TaaI ACNGT 3 cut(s) 635, 760, 898
TaiI ACGT 3 cut(s) 175, 195, 361
TaqI TCGA 4 cut(s) 105, 195, 630, 902
TaqII GACCGA 1 cut(s) 263
TasI AATT 6 cut(s) 439, 474, 530, 613, 874, 886
TauI GCSGC 1 cut(s) 145
TfiI GAWTC 1 cut(s) 323
Tru1I TTAA 3 cut(s) 20, 783, 878
Tru9I TTAA 3 cut(s) 20, 783, 878
TscAI CASTG 1 cut(s) 624
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 2 cut(s) 77, 769
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 2 cut(s) 910, 952
TspGWI ACGGA 1 cut(s) 295
TspRI CASTG 1 cut(s) 624
VpaK11BI GGWCC 2 cut(s) 303, 716
XapI RAATTY 4 cut(s) 439, 530, 613, 886
XbaI TCTAGA 1 cut(s) 353
XmiI GTMKAC 1 cut(s) 195
XmnI GAANNNNTTC 1 cut(s) 886
XspI CTAG 3 cut(s) 354, 680, 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.