Rh3AG103900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0011169
Physical Location & Seq
Forward (+)
8642290 .. 8644209
1920 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG103900.1

Sequence Viewer

Length: 993 bp
ATGCACCACAGAAGCCGATTAACCACCGCGGTGCCACCCCCTTCTCCGATCCCAACAGCTAAAGGCTCCCGCTCCGCAGCCTCCGAAACCTTCACGCATTTCCTCGACAACTGCCTCAAGATCCCCGAGCTCATCGCATTGCCGCCTGCCCACCTCTCCGGAGCAGGCCCACGTCACCAGATCCCAGCTGACGTCGACTTCCAATCCCTCTCCGCCGACTCCATCGCGCGCCTCCTCGTCTCGGCCAAGCAACTCGGAGCGTTTCGGATCATCGGTCATGGAATATCAACCGATGAGTTGAGGTCCGTGGTTCAAGAAGCCGAATCCGTTTTTGGAAATGCCGATCATCAATCTAGGAGTTTCGTTGAGCGCGTTGGTGATCGTGAGGAGATTGCTTGGGTTCGGGATCAAAAGAGCAAATCAGACCAACGATATGAGAATTTTTGTAACAATATGGATAAGGTTGCGAGTAAAATTGAAGCGATTGCAGAACAAGTGAGTGAAGTTTTCTATAAAAATGCGAAAGCGGAATCTTTGAGAAGAAGTGAAGAGAAAGATTGGGTTTTTAGGCTATACAGATACAATGATAATACATTAATGGAGAAAAACCACAGGAATTCACTGAATGAGATCGACTGTGATCGTGAGTTTGATGAACATGGTTTTTGCATCCACCTTCTGCTTGAACATTCTCAGTTCTACATTCAATCAGAGCGAGGTCCATCGTCTTTTGATGCAGGCCCTGAAACGCTTGTTGTTACAGTCGGAAAGCAGCTAAAGGGATTTAAATGTGTTTCAGGGGAAATGATCTTTGTGCCTGTCATAAGCAGAAGCCAAGCCTCTTTCTCCTTGCAACTCAAAGTTCCATTTTTGTCTAATTTCAGAAAAAATTCGAAGACAGTTTCGATTGCTGATCAAGTTTTCATTGCAGTCTTCCTCTGCTTATTATACAAAGTTGTGGTGTTCATGTACGCTTACATTACAACTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

330

Amino Acids

37.24

Weight (kDa)

6.84

Isoelectric Point (pI)

46.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011169)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38500
fragaria_vesca FvH4_6g10130
malus_domestica MD12G1185800.v1.1
prunus_persica Prupe.6G291400_v2.0.a1
pyrus_communis pycom12g17450
rosa_chinensis RchiOBHm_Chr3g0460831
rosa_laevigata RLG00000018120 RLG00000024976
rosa_multiflora Rmu_sc0007678.1_g000011
rosa_roxburghii Rroxscaffold_5G00381390 Rroxscaffold_6G00419180
rosa_rugosa Rorug02G0156100 Rorug03G0046800
rosa_samantha Rh1AG194200 Rh3AG103900 Rh3BG107500 Rh3CG109400 Rh3DG109300 Rh7DG284200
rosa_wichuraiana Rw3G008840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 195
AccB1I GGYRCC 1 cut(s) 31
AccBSI CCGCTC 1 cut(s) 72
AccI GTMKAC 1 cut(s) 195
AccII CGCG 4 cut(s) 29, 227, 229, 372
AccIII TCCGGA 1 cut(s) 158
AciI CCGC 7 cut(s) 27, 29, 70, 75, 143, 213, 527
AclWI GGATC 5 cut(s) 43, 115, 175, 275, 414
AcoI YGGCCR 1 cut(s) 243
AcsI RAATTY 3 cut(s) 439, 616, 889
AcyI GRCGYC 1 cut(s) 192
AfaI GTAC 1 cut(s) 971
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 4 cut(s) 314, 479, 686, 707
AjiI CACGTC 1 cut(s) 173
AjuI GAANNNNNNNTTGG 2 cut(s) 315, 347
AleI CACNNNNGTG 1 cut(s) 29
AluBI AGCT 4 cut(s) 59, 130, 188, 775
AluI AGCT 4 cut(s) 59, 130, 188, 775
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 1 cut(s) 244
AlwI GGATC 5 cut(s) 43, 115, 175, 275, 414
AlwNI CAGNNNCTG 1 cut(s) 743
Ama87I CYCGRG 1 cut(s) 125
Aor13HI TCCGGA 1 cut(s) 158
AoxI GGCC 3 cut(s) 166, 243, 739
ApeKI GCWGC 2 cut(s) 77, 772
ApoI RAATTY 3 cut(s) 439, 616, 889
AseI ATTAAT 1 cut(s) 596
Asp700I GAANNNNTTC 1 cut(s) 889
AspLEI GCGC 3 cut(s) 229, 231, 372
AspS9I GGNCC 4 cut(s) 167, 303, 719, 740
AsuHPI GGTGA 2 cut(s) 167, 389
AsuII TTCGAA 1 cut(s) 893
AvaI CYCGRG 1 cut(s) 125
AvaII GGWCC 2 cut(s) 303, 719
BanI GGYRCC 1 cut(s) 31
BanII GRGCYC 1 cut(s) 132
BbsI GAAGAC 2 cut(s) 902, 925
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 2 cut(s) 89, 784
BccI CCATC 2 cut(s) 230, 730
BclI TGATCA 1 cut(s) 913
BcoDI GTCTC 1 cut(s) 244
BfaI CTAG 1 cut(s) 354
BisI GCNGC 3 cut(s) 78, 143, 773
BlsI GCNGC 3 cut(s) 79, 144, 774
Bme18I GGWCC 2 cut(s) 303, 719
BmeT110I CYCGRG 1 cut(s) 125
BmgBI CACGTC 1 cut(s) 173
BmgT120I GGNCC 4 cut(s) 167, 303, 719, 740
BmiI GGNNCC 2 cut(s) 33, 67
BmsI GCATC 2 cut(s) 678, 724
BpiI GAAGAC 2 cut(s) 902, 925
Bpu14I TTCGAA 1 cut(s) 893
BpuEI CTTGAG 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 27, 306
BsaWI WCCGGW 1 cut(s) 158
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse3DI GCAATG 2 cut(s) 137, 924
BseAI TCCGGA 1 cut(s) 158
BseDI CCNNGG 2 cut(s) 27, 306
BseGI GGATG 1 cut(s) 669
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMI GCAATG 2 cut(s) 137, 924
BseMII CTCAG 1 cut(s) 707
BsePI GCGCGC 1 cut(s) 227
BseRI GAGGAG 2 cut(s) 224, 401
BseXI GCAGC 2 cut(s) 89, 784
BseYI CCCAGC 1 cut(s) 184
Bsh1236I CGCG 4 cut(s) 29, 227, 229, 372
BshFI GGCC 3 cut(s) 168, 245, 741
BshNI GGYRCC 1 cut(s) 31
BsiHKAI GWGCWC 1 cut(s) 132
BsiHKCI CYCGRG 1 cut(s) 125
BsiSI CCGG 1 cut(s) 159
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 1 cut(s) 244
BsmBI CGTCTC 1 cut(s) 244
BsnI GGCC 3 cut(s) 168, 245, 741
BsoBI CYCGRG 1 cut(s) 125
Bsp119I TTCGAA 1 cut(s) 893
Bsp1286I GDGCHC 1 cut(s) 132
Bsp13I TCCGGA 1 cut(s) 158
BspACI CCGC 7 cut(s) 27, 29, 70, 75, 143, 213, 527
BspANI GGCC 3 cut(s) 168, 245, 741
BspCNI CTCAG 1 cut(s) 706
BspEI TCCGGA 1 cut(s) 158
BspFNI CGCG 4 cut(s) 29, 227, 229, 372
BspLI GGNNCC 2 cut(s) 33, 67
BspPI GGATC 5 cut(s) 43, 115, 175, 275, 414
BspT104I TTCGAA 1 cut(s) 893
BspT107I GGYRCC 1 cut(s) 31
BsrBI CCGCTC 1 cut(s) 72
BsrDI GCAATG 2 cut(s) 137, 924
BssECI CCNNGG 2 cut(s) 27, 306
BssHII GCGCGC 1 cut(s) 227
BssNI GRCGYC 1 cut(s) 192
Bst4CI ACNGT 3 cut(s) 638, 763, 901
Bst6I CTCTTC 1 cut(s) 543
BstACI GRCGYC 1 cut(s) 192
BstBI TTCGAA 1 cut(s) 893
BstC8I GCNNGC 4 cut(s) 147, 166, 229, 739
BstDEI CTNAG 1 cut(s) 693
BstDSI CCRYGG 2 cut(s) 27, 306
BstF5I GGATG 1 cut(s) 669
BstFNI CGCG 4 cut(s) 29, 227, 229, 372
BstHHI GCGC 3 cut(s) 229, 231, 372
BstMAI GTCTC 1 cut(s) 244
BstUI CGCG 4 cut(s) 29, 227, 229, 372
BstV1I GCAGC 2 cut(s) 89, 784
BstV2I GAAGAC 2 cut(s) 902, 925
BstX2I RGATCY 2 cut(s) 120, 180
BstYI RGATCY 2 cut(s) 120, 180
BsuRI GGCC 3 cut(s) 168, 245, 741
BtgI CCRYGG 2 cut(s) 27, 306
BtgZI GCGATG 2 cut(s) 118, 208
BtrI CACGTC 1 cut(s) 173
BtsCI GGATG 1 cut(s) 669
BtsIMutI CAGTG 1 cut(s) 620
Cac8I GCNNGC 4 cut(s) 147, 166, 229, 739
CaiI CAGNNNCTG 1 cut(s) 743
CfoI GCGC 3 cut(s) 229, 231, 372
Cfr13I GGNCC 4 cut(s) 167, 303, 719, 740
Cfr42I CCGCGG 1 cut(s) 30
Csp6I GTAC 1 cut(s) 970
CviAII CATG 3 cut(s) 278, 659, 967
CviQI GTAC 1 cut(s) 970
DdeI CTNAG 1 cut(s) 693
DraI TTTAAA 1 cut(s) 787
EaeI YGGCCR 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 543
EarI CTCTTC 1 cut(s) 543
EciI GGCGGA 1 cut(s) 202
Ecl136II GAGCTC 1 cut(s) 130
Eco24I GRGCYC 1 cut(s) 132
Eco47I GGWCC 2 cut(s) 303, 719
Eco53kI GAGCTC 1 cut(s) 130
Eco88I CYCGRG 1 cut(s) 125
EcoICRI GAGCTC 1 cut(s) 130
EcoO109I RGGNCCY 1 cut(s) 740
EcoRI GAATTC 1 cut(s) 616
EcoT38I GRGCYC 1 cut(s) 132
Esp3I CGTCTC 1 cut(s) 244
FaeI CATG 3 cut(s) 281, 662, 970
FatI CATG 3 cut(s) 277, 658, 966
FauI CCCGC 1 cut(s) 77
FbaI TGATCA 1 cut(s) 913
FblI GTMKAC 1 cut(s) 195
Fnu4HI GCNGC 3 cut(s) 78, 143, 773
FokI GGATG 1 cut(s) 656
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 3 cut(s) 78, 143, 773
FspBI CTAG 1 cut(s) 354
GlaI GCGC 3 cut(s) 228, 230, 371
GluI GCNGC 3 cut(s) 78, 143, 773
GsaI CCCAGC 1 cut(s) 188
HaeIII GGCC 3 cut(s) 168, 245, 741
HapII CCGG 1 cut(s) 159
HhaI GCGC 3 cut(s) 229, 231, 372
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 3 cut(s) 281, 662, 970
Hin6I GCGC 3 cut(s) 227, 229, 370
HinP1I GCGC 3 cut(s) 227, 229, 370
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 3 cut(s) 218, 323, 530
HpaII CCGG 1 cut(s) 159
HphI GGTGA 2 cut(s) 167, 389
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 8 cut(s) 48, 85, 257, 267, 424, 712, 767, 884
Hpy188III TCNNGA 6 cut(s) 118, 159, 314, 383, 404, 644
Hpy8I GTNNAC 1 cut(s) 196
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 3 cut(s) 51, 100, 686
HpyCH4III ACNGT 3 cut(s) 638, 763, 901
HpyCH4IV ACGT 2 cut(s) 172, 192
HpyCH4V TGCA 6 cut(s) 4, 488, 669, 737, 853, 929
HpyF3I CTNAG 1 cut(s) 693
HpySE526I ACGT 2 cut(s) 172, 192
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 3 cut(s) 281, 662, 970
HspAI GCGC 3 cut(s) 227, 229, 370
Kpn2I TCCGGA 1 cut(s) 158
Ksp22I TGATCA 1 cut(s) 913
KspI CCGCGG 1 cut(s) 30
LmnI GCTCC 4 cut(s) 71, 77, 161, 257
Lsp1109I GCAGC 2 cut(s) 89, 784
LweI GCATC 2 cut(s) 678, 724
MaeI CTAG 1 cut(s) 354
MaeII ACGT 2 cut(s) 172, 192
MaeIII GTNAC 3 cut(s) 173, 446, 757
MbiI CCGCTC 1 cut(s) 72
MboII GAAGA 4 cut(s) 552, 560, 907, 925
MflI RGATCY 2 cut(s) 120, 180
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 5 cut(s) 439, 474, 616, 877, 889
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 1 cut(s) 745
MroI TCCGGA 1 cut(s) 158
MroXI GAANNNNTTC 1 cut(s) 889
MseI TTAA 3 cut(s) 20, 596, 786
MslI CAYNNNNRTG 1 cut(s) 29
MspA1I CMGCKG 2 cut(s) 29, 188
MspI CCGG 1 cut(s) 159
MvnI CGCG 4 cut(s) 29, 227, 229, 372
NlaIII CATG 3 cut(s) 281, 662, 970
NlaIV GGNNCC 2 cut(s) 33, 67
NmeAIII GCCGAG 1 cut(s) 221
NmuCI GTSAC 1 cut(s) 173
NspV TTCGAA 1 cut(s) 893
OliI CACNNNNGTG 1 cut(s) 29
PauI GCGCGC 1 cut(s) 227
PcsI WCGNNNNNNNCGW 1 cut(s) 369
PdmI GAANNNNTTC 1 cut(s) 889
PfeI GAWTC 2 cut(s) 323, 530
PkrI GCNGC 3 cut(s) 79, 144, 774
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PshBI ATTAAT 1 cut(s) 596
Psp124BI GAGCTC 1 cut(s) 132
PspFI CCCAGC 1 cut(s) 184
PspN4I GGNNCC 2 cut(s) 33, 67
PspPI GGNCC 4 cut(s) 167, 303, 719, 740
PstNI CAGNNNCTG 1 cut(s) 743
PsuI RGATCY 2 cut(s) 120, 180
PteI GCGCGC 1 cut(s) 227
PvuII CAGCTG 1 cut(s) 188
RsaI GTAC 1 cut(s) 971
RsaNI GTAC 1 cut(s) 970
RseI CAYNNNNRTG 1 cut(s) 29
SacI GAGCTC 1 cut(s) 132
SacII CCGCGG 1 cut(s) 30
SalI GTCGAC 1 cut(s) 194
SaqAI TTAA 3 cut(s) 20, 596, 786
SatI GCNGC 3 cut(s) 78, 143, 773
Sau96I GGNCC 4 cut(s) 167, 303, 719, 740
SchI GAGTC 1 cut(s) 212
SduI GDGCHC 1 cut(s) 132
SfaNI GCATC 2 cut(s) 678, 724
Sfr303I CCGCGG 1 cut(s) 30
SfuI TTCGAA 1 cut(s) 893
SgrBI CCGCGG 1 cut(s) 30
SinI GGWCC 2 cut(s) 303, 719
SmiI ATTTAAAT 1 cut(s) 787
SmiMI CAYNNNNRTG 1 cut(s) 29
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 5 cut(s) 439, 474, 616, 877, 889
SsiI CCGC 7 cut(s) 27, 29, 70, 75, 143, 213, 527
SspMI CTAG 1 cut(s) 354
SstI GAGCTC 1 cut(s) 132
SwaI ATTTAAAT 1 cut(s) 787
TaaI ACNGT 3 cut(s) 638, 763, 901
TaiI ACGT 2 cut(s) 175, 195
TaqI TCGA 5 cut(s) 105, 195, 633, 893, 905
TaqII GACCGA 1 cut(s) 263
TasI AATT 5 cut(s) 439, 474, 616, 877, 889
TauI GCSGC 1 cut(s) 145
TfiI GAWTC 2 cut(s) 323, 530
Tru1I TTAA 3 cut(s) 20, 596, 786
Tru9I TTAA 3 cut(s) 20, 596, 786
TscAI CASTG 1 cut(s) 627
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 2 cut(s) 77, 772
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 3 cut(s) 669, 913, 955
TspGWI ACGGA 2 cut(s) 295, 316
TspRI CASTG 1 cut(s) 627
VpaK11BI GGWCC 2 cut(s) 303, 719
VspI ATTAAT 1 cut(s) 596
XapI RAATTY 3 cut(s) 439, 616, 889
XmiI GTMKAC 1 cut(s) 195
XmnI GAANNNNTTC 1 cut(s) 889
XspI CTAG 1 cut(s) 354
ZraI GACGTC 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.