Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0011169

Physical Location & Seq

Genomic Coordinates Reverse (-)

61397985 .. 61398585

Gene Structure 601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00381390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTCGACGGTGAGCATTGAGCCTCTTCTCCACCACCACTGTCGCCGGGGAAACTCCCGGCACCGTTCAACGCCGAAGCTCATCCACCTCAGCTCCTCCCTGAGTGCCTTTCCGAAAAAGGTCGAGTTTCGTGGCCGGAGCTTCTGCAAGTTCCGGCATCCCACTGCTCTCACTCTCAGAGCTTCTTCTACTGACACCGCCGTAGCTGCGACCACCGCGCCTTTCTTCAAGGAAACATTTCCTCTTGAGCGAACTGAACTGGTGGAGGGAAAGATCTTTGTGAGATTAGATCACGGGAAGAATGCTCGGAATTGGATTCTCACTGTTGGTTGTACTCTTCCCGGAAAGTGGATTCTGCACTGGGGAGTTTCACAGGTTGATGACGTCGGCAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004556 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016160 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046352 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase

Protein Analysis

131

Amino Acids

14.79

Weight (kDa)

10.42

Isoelectric Point (pI)

44.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38500
fragaria_vesca	FvH4_6g10130
malus_domestica	MD12G1185800.v1.1
prunus_persica	Prupe.6G291400_v2.0.a1
pyrus_communis	pycom12g17450
rosa_chinensis	RchiOBHm_Chr3g0460831
rosa_laevigata	RLG00000018120 RLG00000024976
rosa_multiflora	Rmu_sc0007678.1_g000011
rosa_roxburghii	Rroxscaffold_5G00381390 Rroxscaffold_6G00419180
rosa_rugosa	Rorug02G0156100 Rorug03G0046800
rosa_samantha	Rh1AG194200 Rh3AG103900 Rh3BG107500 Rh3CG109400 Rh3DG109300 Rh7DG284200
rosa_wichuraiana	Rw3G008840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	387
Acc36I	ACCTGC	1 cut(s)	381
AccB1I	GGYRCC	1 cut(s)	60
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	218
AciI	CCGC	2 cut(s)	198, 216
AcoI	YGGCCR	1 cut(s)	133
AcyI	GRCGYC	1 cut(s)	384
AfaI	GTAC	1 cut(s)	334
AfiI	CCNNNNNNNGG	1 cut(s)	348
AgsI	TTSAA	2 cut(s)	69, 229
AluBI	AGCT	5 cut(s)	79, 93, 141, 182, 206
AluI	AGCT	5 cut(s)	79, 93, 141, 182, 206
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	1 cut(s)	206
Asp700I	GAANNNNTTC	1 cut(s)	237
AspLEI	GCGC	1 cut(s)	220
AsuC2I	CCSGG	3 cut(s)	47, 58, 342
AsuHPI	GGTGA	1 cut(s)	22
BanI	GGYRCC	1 cut(s)	60
BbvCI	CCTCAGC	1 cut(s)	89
BbvI	GCAGC	1 cut(s)	193
BceAI	ACGGC	1 cut(s)	185
BcnI	CCSGG	3 cut(s)	47, 58, 342
BfuAI	ACCTGC	1 cut(s)	381
BglII	AGATCT	1 cut(s)	273
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme1390I	CCNGG	3 cut(s)	47, 58, 342
BmiI	GGNNCC	1 cut(s)	62
BmrFI	CCNGG	3 cut(s)	47, 58, 342
BmrI	ACTGGG	1 cut(s)	370
BmsI	GCATC	1 cut(s)	166
BmuI	ACTGGG	1 cut(s)	370
Bpu10I	CCTNAGC	1 cut(s)	89
BpuEI	CTTGAG	1 cut(s)	266
BpuMI	CCSGG	3 cut(s)	47, 58, 342
BsaHI	GRCGYC	1 cut(s)	384
BsaJI	CCNNGG	1 cut(s)	46
BsaXI	ACNNNNNCTCC	2 cut(s)	77, 107
Bsc4I	CCNNNNNNNGG	1 cut(s)	348
Bse1I	ACTGG	2 cut(s)	264, 365
BseDI	CCNNGG	1 cut(s)	46
BseGI	GGATG	2 cut(s)	81, 157
BseLI	CCNNNNNNNGG	1 cut(s)	348
BseMII	CTCAG	3 cut(s)	92, 103, 190
BseNI	ACTGG	2 cut(s)	264, 365
BseRI	GAGGAG	1 cut(s)	85
BseXI	GCAGC	1 cut(s)	193
BsgI	GTGCAG	1 cut(s)	341
Bsh1236I	CGCG	1 cut(s)	218
BshFI	GGCC	1 cut(s)	135
BshNI	GGYRCC	1 cut(s)	60
BsiSI	CCGG	5 cut(s)	46, 58, 136, 154, 342
BslI	CCNNNNNNNGG	1 cut(s)	348
BsmI	GAATGC	1 cut(s)	307
BsnI	GGCC	1 cut(s)	135
Bsp143I	GATC	2 cut(s)	273, 289
BspACI	CCGC	2 cut(s)	198, 216
BspANI	GGCC	1 cut(s)	135
BspCNI	CTCAG	3 cut(s)	93, 102, 189
BspFNI	CGCG	1 cut(s)	218
BspLI	GGNNCC	1 cut(s)	62
BspMI	ACCTGC	1 cut(s)	381
BspT107I	GGYRCC	1 cut(s)	60
BsrI	ACTGG	2 cut(s)	264, 365
BssECI	CCNNGG	1 cut(s)	46
BssMI	GATC	2 cut(s)	273, 289
BssNI	GRCGYC	1 cut(s)	384
Bst4CI	ACNGT	4 cut(s)	10, 41, 65, 325
Bst6I	CTCTTC	2 cut(s)	30, 342
BstACI	GRCGYC	1 cut(s)	384
BstDEI	CTNAG	3 cut(s)	89, 101, 176
BstF5I	GGATG	2 cut(s)	81, 157
BstFNI	CGCG	1 cut(s)	218
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	2 cut(s)	276, 292
BstMBI	GATC	2 cut(s)	273, 289
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 215
BstSCI	CCNGG	3 cut(s)	45, 56, 340
BstUI	CGCG	1 cut(s)	218
BstV1I	GCAGC	1 cut(s)	193
BstX2I	RGATCY	1 cut(s)	273
BstYI	RGATCY	1 cut(s)	273
BsuRI	GGCC	1 cut(s)	135
BtsCI	GGATG	2 cut(s)	81, 157
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	4 cut(s)	37, 162, 321, 358
BveI	ACCTGC	1 cut(s)	381
CfoI	GCGC	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	333
CviJI	RGCY	7 cut(s)	22, 79, 93, 135, 141, 182, 206
CviKI_1	RGCY	7 cut(s)	22, 79, 93, 135, 141, 182, 206
CviQI	GTAC	1 cut(s)	333
DdeI	CTNAG	3 cut(s)	89, 101, 176
DpnI	GATC	2 cut(s)	275, 291
DpnII	GATC	2 cut(s)	273, 289
EaeI	YGGCCR	1 cut(s)	133
Eam1104I	CTCTTC	2 cut(s)	30, 342
EarI	CTCTTC	2 cut(s)	30, 342
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	207
FokI	GGATG	2 cut(s)	68, 144
Fsp4HI	GCNGC	1 cut(s)	207
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	1 cut(s)	207
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	5 cut(s)	46, 58, 136, 154, 342
HhaI	GCGC	1 cut(s)	220
Hin1I	GRCGYC	1 cut(s)	384
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	316, 352
HpaII	CCGG	5 cut(s)	46, 58, 136, 154, 342
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	3 cut(s)	114, 179, 309
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	2 cut(s)	10, 389
HpyCH4III	ACNGT	4 cut(s)	10, 41, 65, 325
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	2 cut(s)	147, 358
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 215
HpyF3I	CTNAG	3 cut(s)	89, 101, 176
HpySE526I	ACGT	1 cut(s)	384
Hsp92I	GRCGYC	1 cut(s)	384
HspAI	GCGC	1 cut(s)	218
Kzo9I	GATC	2 cut(s)	273, 289
LmnI	GCTCC	2 cut(s)	98, 138
Lsp1109I	GCAGC	1 cut(s)	193
LweI	GCATC	1 cut(s)	166
MaeII	ACGT	1 cut(s)	384
MalI	GATC	2 cut(s)	275, 291
MboI	GATC	2 cut(s)	273, 289
MboII	GAAGA	5 cut(s)	17, 177, 217, 310, 329
MflI	RGATCY	1 cut(s)	273
MluCI	AATT	1 cut(s)	310
MnlI	CCTC	5 cut(s)	33, 98, 106, 252, 259
MroXI	GAANNNNTTC	1 cut(s)	237
MspI	CCGG	5 cut(s)	46, 58, 136, 154, 342
MspR9I	CCNGG	3 cut(s)	47, 58, 342
Mva1269I	GAATGC	1 cut(s)	307
MvnI	CGCG	1 cut(s)	218
MwoI	GCNNNNNNNGC	2 cut(s)	206, 215
NciI	CCSGG	3 cut(s)	47, 58, 342
NdeII	GATC	2 cut(s)	273, 289
NlaIV	GGNNCC	1 cut(s)	62
PctI	GAATGC	1 cut(s)	307
PdmI	GAANNNNTTC	1 cut(s)	237
PfeI	GAWTC	2 cut(s)	316, 352
PfoI	TCCNGGA	1 cut(s)	340
PkrI	GCNGC	1 cut(s)	208
PspN4I	GGNNCC	1 cut(s)	62
PsuI	RGATCY	1 cut(s)	273
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
SalI	GTCGAC	1 cut(s)	4
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	2 cut(s)	273, 289
ScrFI	CCNGG	3 cut(s)	47, 58, 342
SfaNI	GCATC	1 cut(s)	166
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	1 cut(s)	310
SsiI	CCGC	2 cut(s)	198, 216
StyD4I	CCNGG	3 cut(s)	45, 56, 340
TaaI	ACNGT	4 cut(s)	10, 41, 65, 325
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	2 cut(s)	5, 123
TasI	AATT	1 cut(s)	310
TatI	WGTACW	1 cut(s)	332
TfiI	GAWTC	2 cut(s)	316, 352
TscAI	CASTG	4 cut(s)	44, 169, 328, 365
TseI	GCWGC	1 cut(s)	206
TspRI	CASTG	4 cut(s)	44, 169, 328, 365
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	237
ZraI	GACGTC	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.