Rmu_sc0007678.1_g000011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007678.1
OG0011169
Physical Location & Seq
Reverse (-)
36988 .. 40477
3490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007678.1_g000011.1.cds

Sequence Viewer

Length: 1365 bp
atgggaaccccttacaccctaagcacaactcaaacaactcaatcttgcacgcaaagcgaccctttcatattcaccaactaccgatcaaccttaccaccactccgattcaacatttcccttatactctacgccgccgtggctatcatgcaccacagaagccgattaaccaccgcggtgccacccccttctcctatcccaacagctaaaggctcccgctccgcagcctccgaaaccttcacgcatttcctcgacaactgcctcaagatccccgagctcatcgcattgccccctgcccacctctccggcaccggcccacgtcaccagatccccgcttacgtcgacttccaatccctctccgccgactccatcgcgcgccttctcgtctcggccaagcaactcggagcgtttcggatcattggtcatggaatatcaaccgatgagttgaggtccgtggttcaagaagccgaatccatttttggaaatgccgatcatcaatctagacgtttcgttgagggcgttggtgatcgtgaggagattgcttgggttcgggatcaaaagagcaaatcagaccaacgatatgagaatttttgtaacaatatggataaggttgcgagtaaaattgaagcgattgcagaacaaatgaatgaagttttctataaaaatgcgaaagctgaatttgtgagaagaagcgaagagaaagattgggtttttaggctatacagatacaatgataatacaatggagcaaaaccacaggaattcactgaatgagatcgactgtgatcgtgagtgtgatgatcatggtttttgcatccaccttccgctagaacattctcagttctccattcaatcagagcgaggtccattgtcttttgatgcaggccctgaaacgcttgttgttacagtcggaaagcagctagagggatttaaatgtgtttcaggggaaatgatctttgtgcctgacataagcagaagccaagcctctttctccttgcaactcaaagttccattttcaaactcccgccaccgttcaacgccgaagctcatcaaccttagctcctccttgactgcctttcctaaaaaagttgagttttgcggccggagcttttgcaacttccggcatcctactgctctcactctcagagattcttctactggcaccgccgtagctgcgaccaccccgcctttcttcaagaagacatatcctcttgagcgaactgacttatactcgaaattgtgctcctcgtcggacatgggtgggctccaatctctgagagaaagaaagagaaatggaattgatcaaaggaggagagatgagaagcgtcagagaaagggattgcagcggtctgattcgccaatggcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

454

Amino Acids

51.17

Weight (kDa)

8.92

Isoelectric Point (pI)

57.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011169)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38500
fragaria_vesca FvH4_6g10130
malus_domestica MD12G1185800.v1.1
prunus_persica Prupe.6G291400_v2.0.a1
pyrus_communis pycom12g17450
rosa_chinensis RchiOBHm_Chr3g0460831
rosa_laevigata RLG00000018120 RLG00000024976
rosa_multiflora Rmu_sc0007678.1_g000011
rosa_roxburghii Rroxscaffold_5G00381390 Rroxscaffold_6G00419180
rosa_rugosa Rorug02G0156100 Rorug03G0046800
rosa_samantha Rh1AG194200 Rh3AG103900 Rh3BG107500 Rh3CG109400 Rh3DG109300 Rh7DG284200
rosa_wichuraiana Rw3G008840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 175, 305, 1157
AccBSI CCGCTC 1 cut(s) 216
AccI GTMKAC 1 cut(s) 339
AccII CGCG 3 cut(s) 173, 371, 373
AclWI GGATC 4 cut(s) 259, 319, 419, 558
AcoI YGGCCR 2 cut(s) 387, 1096
AcsI RAATTY 3 cut(s) 583, 674, 757
AgsI TTSAA 7 cut(s) 109, 458, 623, 848, 1014, 1032, 1192
AjiI CACGTC 1 cut(s) 317
AjuI GAANNNNNNNTTGG 2 cut(s) 459, 491
AleI CACNNNNGTG 1 cut(s) 173
AluBI AGCT 8 cut(s) 203, 274, 671, 916, 1042, 1056, 1104, 1169
AluI AGCT 8 cut(s) 203, 274, 671, 916, 1042, 1056, 1104, 1169
Alw21I GWGCWC 2 cut(s) 276, 1241
Alw26I GTCTC 1 cut(s) 388
AlwI GGATC 4 cut(s) 259, 319, 419, 558
AlwNI CAGNNNCTG 1 cut(s) 884
Ama87I CYCGRG 1 cut(s) 269
AoxI GGCC 5 cut(s) 310, 387, 880, 1096, 1359
ApeKI GCWGC 4 cut(s) 221, 913, 1169, 1339
ApoI RAATTY 3 cut(s) 583, 674, 757
AspLEI GCGC 2 cut(s) 373, 375
AspS9I GGNCC 4 cut(s) 311, 447, 860, 881
AsuHPI GGTGA 3 cut(s) 64, 311, 533
AvaI CYCGRG 1 cut(s) 269
AvaII GGWCC 2 cut(s) 447, 860
BanI GGYRCC 3 cut(s) 175, 305, 1157
BanII GRGCYC 2 cut(s) 276, 1263
BbsI GAAGAC 1 cut(s) 1202
Bbv12I GWGCWC 2 cut(s) 276, 1241
BbvI GCAGC 4 cut(s) 233, 925, 1156, 1351
BccI CCATC 1 cut(s) 374
BceAI ACGGC 2 cut(s) 119, 1148
BclI TGATCA 2 cut(s) 796, 1297
BcoDI GTCTC 1 cut(s) 388
BfaI CTAG 3 cut(s) 498, 824, 917
BglI GCCNNNNNGGC 1 cut(s) 137
BisI GCNGC 6 cut(s) 132, 222, 914, 1096, 1170, 1340
BlsI GCNGC 6 cut(s) 133, 223, 915, 1097, 1171, 1341
Bme18I GGWCC 2 cut(s) 447, 860
BmeT110I CYCGRG 1 cut(s) 269
BmgBI CACGTC 1 cut(s) 317
BmgT120I GGNCC 4 cut(s) 311, 447, 860, 881
BmiI GGNNCC 6 cut(s) 7, 177, 211, 307, 1159, 1262
BmsI GCATC 3 cut(s) 819, 865, 1129
BpiI GAAGAC 1 cut(s) 1202
Bpu10I CCTNAGC 2 cut(s) 20, 1052
BpuEI CTTGAG 2 cut(s) 245, 1229
BsaJI CCNNGG 3 cut(s) 135, 171, 450
BsaXI ACNNNNNCTCC 4 cut(s) 84, 114, 1040, 1070
Bse118I RCCGGY 1 cut(s) 308
Bse1I ACTGG 1 cut(s) 1159
Bse3DI GCAATG 1 cut(s) 281
BseDI CCNNGG 3 cut(s) 135, 171, 450
BseGI GGATG 2 cut(s) 810, 1120
BseMI GCAATG 1 cut(s) 281
BseMII CTCAG 3 cut(s) 848, 1153, 1262
BseNI ACTGG 1 cut(s) 1159
BsePI GCGCGC 1 cut(s) 371
BseRI GAGGAG 4 cut(s) 545, 1048, 1231, 1321
BseX3I CGGCCG 1 cut(s) 1096
BseXI GCAGC 4 cut(s) 233, 925, 1156, 1351
Bsh1236I CGCG 3 cut(s) 173, 371, 373
Bsh1285I CGRYCG 1 cut(s) 1099
BshFI GGCC 5 cut(s) 312, 389, 882, 1098, 1361
BshNI GGYRCC 3 cut(s) 175, 305, 1157
BsiEI CGRYCG 1 cut(s) 1099
BsiHKAI GWGCWC 2 cut(s) 276, 1241
BsiHKCI CYCGRG 1 cut(s) 269
BsiSI CCGG 4 cut(s) 303, 309, 1099, 1117
BsmAI GTCTC 1 cut(s) 388
BsmBI CGTCTC 1 cut(s) 388
BsnI GGCC 5 cut(s) 312, 389, 882, 1098, 1361
BsoBI CYCGRG 1 cut(s) 269
Bsp1286I GDGCHC 3 cut(s) 276, 1241, 1263
BspANI GGCC 5 cut(s) 312, 389, 882, 1098, 1361
BspCNI CTCAG 3 cut(s) 847, 1152, 1263
BspFNI CGCG 3 cut(s) 173, 371, 373
BspLI GGNNCC 6 cut(s) 7, 177, 211, 307, 1159, 1262
BspPI GGATC 4 cut(s) 259, 319, 419, 558
BspT107I GGYRCC 3 cut(s) 175, 305, 1157
BsrBI CCGCTC 1 cut(s) 216
BsrDI GCAATG 1 cut(s) 281
BsrFI RCCGGY 1 cut(s) 308
BsrI ACTGG 1 cut(s) 1159
BssAI RCCGGY 1 cut(s) 308
BssECI CCNNGG 3 cut(s) 135, 171, 450
BssHII GCGCGC 1 cut(s) 371
Bst4CI ACNGT 3 cut(s) 779, 904, 1028
Bst6I CTCTTC 1 cut(s) 687
BstC8I GCNNGC 3 cut(s) 50, 373, 880
BstDEI CTNAG 5 cut(s) 20, 834, 1052, 1139, 1271
BstDSI CCRYGG 3 cut(s) 135, 171, 450
BstF5I GGATG 2 cut(s) 810, 1120
BstFNI CGCG 3 cut(s) 173, 371, 373
BstHHI GCGC 2 cut(s) 373, 375
BstMAI GTCTC 1 cut(s) 388
BstMCI CGRYCG 1 cut(s) 1099
BstMWI GCNNNNNNNGC 4 cut(s) 54, 137, 1101, 1169
BstUI CGCG 3 cut(s) 173, 371, 373
BstV1I GCAGC 4 cut(s) 233, 925, 1156, 1351
BstV2I GAAGAC 1 cut(s) 1202
BstX2I RGATCY 2 cut(s) 264, 324
BstYI RGATCY 2 cut(s) 264, 324
BstZI CGGCCG 1 cut(s) 1096
BsuRI GGCC 5 cut(s) 312, 389, 882, 1098, 1361
BtgI CCRYGG 3 cut(s) 135, 171, 450
BtgZI GCGATG 2 cut(s) 262, 352
BtrI CACGTC 1 cut(s) 317
BtsCI GGATG 2 cut(s) 810, 1120
BtsIMutI CAGTG 1 cut(s) 761
Cac8I GCNNGC 3 cut(s) 50, 373, 880
CaiI CAGNNNCTG 1 cut(s) 884
CfoI GCGC 2 cut(s) 373, 375
Cfr10I RCCGGY 1 cut(s) 308
Cfr13I GGNCC 4 cut(s) 311, 447, 860, 881
Cfr42I CCGCGG 1 cut(s) 174
CseI GACGC 1 cut(s) 1310
CviAII CATG 4 cut(s) 145, 422, 800, 1252
DdeI CTNAG 5 cut(s) 20, 834, 1052, 1139, 1271
DraI TTTAAA 1 cut(s) 928
EaeI YGGCCR 2 cut(s) 387, 1096
EagI CGGCCG 1 cut(s) 1096
Eam1104I CTCTTC 1 cut(s) 687
EarI CTCTTC 1 cut(s) 687
EciI GGCGGA 1 cut(s) 346
Ecl136II GAGCTC 1 cut(s) 274
EclXI CGGCCG 1 cut(s) 1096
Eco24I GRGCYC 2 cut(s) 276, 1263
Eco47I GGWCC 2 cut(s) 447, 860
Eco52I CGGCCG 1 cut(s) 1096
Eco53kI GAGCTC 1 cut(s) 274
Eco88I CYCGRG 1 cut(s) 269
EcoICRI GAGCTC 1 cut(s) 274
EcoO109I RGGNCCY 1 cut(s) 881
EcoRI GAATTC 1 cut(s) 757
EcoT38I GRGCYC 2 cut(s) 276, 1263
Esp3I CGTCTC 1 cut(s) 388
FaeI CATG 4 cut(s) 148, 425, 803, 1255
FalI AAGNNNNNCTT 2 cut(s) 46, 78
FatI CATG 4 cut(s) 144, 421, 799, 1251
FauI CCCGC 4 cut(s) 221, 337, 1028, 1188
FbaI TGATCA 2 cut(s) 796, 1297
FblI GTMKAC 1 cut(s) 339
Fnu4HI GCNGC 6 cut(s) 132, 222, 914, 1096, 1170, 1340
FokI GGATG 2 cut(s) 797, 1107
FriOI GRGCYC 2 cut(s) 276, 1263
Fsp4HI GCNGC 6 cut(s) 132, 222, 914, 1096, 1170, 1340
FspBI CTAG 3 cut(s) 498, 824, 917
GlaI GCGC 2 cut(s) 372, 374
GluI GCNGC 6 cut(s) 132, 222, 914, 1096, 1170, 1340
HaeIII GGCC 5 cut(s) 312, 389, 882, 1098, 1361
HapII CCGG 4 cut(s) 303, 309, 1099, 1117
HgaI GACGC 1 cut(s) 1310
HhaI GCGC 2 cut(s) 373, 375
Hin1II CATG 4 cut(s) 148, 425, 803, 1255
Hin6I GCGC 2 cut(s) 371, 373
HinP1I GCGC 2 cut(s) 371, 373
HincII GTYRAC 1 cut(s) 340
HindII GTYRAC 1 cut(s) 340
HinfI GANTC 5 cut(s) 105, 362, 467, 1145, 1349
HpaII CCGG 4 cut(s) 303, 309, 1099, 1117
HphI GGTGA 3 cut(s) 64, 311, 533
Hpy166II GTNNAC 1 cut(s) 340
Hpy188III TCNNGA 8 cut(s) 262, 458, 498, 527, 548, 785, 1192, 1208
Hpy8I GTNNAC 1 cut(s) 340
Hpy99I CGWCG 2 cut(s) 341, 1249
HpyAV CCTTC 4 cut(s) 195, 244, 386, 827
HpyCH4III ACNGT 3 cut(s) 779, 904, 1028
HpyCH4IV ACGT 3 cut(s) 316, 336, 502
HpyCH4V TGCA 8 cut(s) 48, 148, 632, 810, 878, 994, 1110, 1339
HpyF10VI GCNNNNNNNGC 4 cut(s) 54, 137, 1101, 1169
HpyF3I CTNAG 5 cut(s) 20, 834, 1052, 1139, 1271
HpySE526I ACGT 3 cut(s) 316, 336, 502
Hsp92II CATG 4 cut(s) 148, 425, 803, 1255
HspAI GCGC 2 cut(s) 371, 373
Ksp22I TGATCA 2 cut(s) 796, 1297
KspI CCGCGG 1 cut(s) 174
LmnI GCTCC 8 cut(s) 215, 221, 401, 742, 1061, 1101, 1244, 1266
Lsp1109I GCAGC 4 cut(s) 233, 925, 1156, 1351
LweI GCATC 3 cut(s) 819, 865, 1129
MaeI CTAG 3 cut(s) 498, 824, 917
MaeII ACGT 3 cut(s) 316, 336, 502
MaeIII GTNAC 3 cut(s) 317, 590, 898
MbiI CCGCTC 1 cut(s) 216
MboII GAAGA 5 cut(s) 696, 704, 1140, 1180, 1207
MflI RGATCY 2 cut(s) 264, 324
MhlI GDGCHC 3 cut(s) 276, 1241, 1263
MluCI AATT 6 cut(s) 583, 618, 674, 757, 1232, 1293
MlyI GAGTC 1 cut(s) 356
MmeI TCCRAC 2 cut(s) 886, 1227
MseI TTAA 2 cut(s) 164, 927
MslI CAYNNNNRTG 1 cut(s) 173
MspA1I CMGCKG 2 cut(s) 173, 1342
MspI CCGG 4 cut(s) 303, 309, 1099, 1117
MvnI CGCG 3 cut(s) 173, 371, 373
MwoI GCNNNNNNNGC 4 cut(s) 54, 137, 1101, 1169
NlaIII CATG 4 cut(s) 148, 425, 803, 1255
NlaIV GGNNCC 6 cut(s) 7, 177, 211, 307, 1159, 1262
NmeAIII GCCGAG 1 cut(s) 365
NmuCI GTSAC 1 cut(s) 317
OliI CACNNNNGTG 1 cut(s) 173
PauI GCGCGC 1 cut(s) 371
PcsI WCGNNNNNNNCGW 1 cut(s) 513
PfeI GAWTC 4 cut(s) 105, 467, 1145, 1349
PkrI GCNGC 6 cut(s) 133, 223, 915, 1097, 1171, 1341
PleI GAGTC 1 cut(s) 356
PpsI GAGTC 1 cut(s) 356
Psp124BI GAGCTC 1 cut(s) 276
PspN4I GGNNCC 6 cut(s) 7, 177, 211, 307, 1159, 1262
PspPI GGNCC 4 cut(s) 311, 447, 860, 881
PstNI CAGNNNCTG 1 cut(s) 884
PsuI RGATCY 2 cut(s) 264, 324
PteI GCGCGC 1 cut(s) 371
RseI CAYNNNNRTG 1 cut(s) 173
SacI GAGCTC 1 cut(s) 276
SacII CCGCGG 1 cut(s) 174
SalI GTCGAC 1 cut(s) 338
SaqAI TTAA 2 cut(s) 164, 927
SatI GCNGC 6 cut(s) 132, 222, 914, 1096, 1170, 1340
Sau96I GGNCC 4 cut(s) 311, 447, 860, 881
SchI GAGTC 1 cut(s) 356
SduI GDGCHC 3 cut(s) 276, 1241, 1263
SfaNI GCATC 3 cut(s) 819, 865, 1129
Sfr303I CCGCGG 1 cut(s) 174
SgrBI CCGCGG 1 cut(s) 174
SinI GGWCC 2 cut(s) 447, 860
SmiI ATTTAAAT 1 cut(s) 928
SmiMI CAYNNNNRTG 1 cut(s) 173
SmlI CTYRAG 2 cut(s) 260, 1208
SmoI CTYRAG 2 cut(s) 260, 1208
Sse9I AATT 6 cut(s) 583, 618, 674, 757, 1232, 1293
SspMI CTAG 3 cut(s) 498, 824, 917
SstI GAGCTC 1 cut(s) 276
SwaI ATTTAAAT 1 cut(s) 928
TaaI ACNGT 3 cut(s) 779, 904, 1028
TaiI ACGT 3 cut(s) 319, 339, 505
TaqI TCGA 4 cut(s) 249, 339, 774, 1229
TasI AATT 6 cut(s) 583, 618, 674, 757, 1232, 1293
TauI GCSGC 2 cut(s) 134, 1098
TfiI GAWTC 4 cut(s) 105, 467, 1145, 1349
Tru1I TTAA 2 cut(s) 164, 927
Tru9I TTAA 2 cut(s) 164, 927
TscAI CASTG 1 cut(s) 768
TseFI GTSAC 1 cut(s) 317
TseI GCWGC 4 cut(s) 221, 913, 1169, 1339
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 3 cut(s) 55, 656, 660
TspGWI ACGGA 1 cut(s) 439
TspRI CASTG 1 cut(s) 768
VpaK11BI GGWCC 2 cut(s) 447, 860
XapI RAATTY 3 cut(s) 583, 674, 757
XbaI TCTAGA 1 cut(s) 497
XmiI GTMKAC 1 cut(s) 339
XspI CTAG 3 cut(s) 498, 824, 917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.