Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006690

Physical Location & Seq

Genomic Coordinates Reverse (-)

16194326 .. 16196183

Gene Structure 1858 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G38740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGAATGGCTTCTCTGATCTTAATCCTTCTGAGAGCAAACCTTCTCTGTCACAACTAGCTCCATTAGAAGCCATTCTGTTTGATGTTGATGGAACACTCTGTGACTCAGATCCCATCCACCTTATTGCCTTCCAAGAACTGCTTCAAGAGATTGGTTTTAACAATGGTGTCCCAATCGATGAGAAATTCTTTGTTGAGAACATTGCTGGAAAACACAATTCTGAAATTGCTCTACTTCTGTTCCCTGATGATGTTTCAAGAGGGTTAAAATTCTGTGATGAAAAGGAAGCTCTTTACCGCAAAATTGTTGCAGAGAAGATAAAGCCACTTGATGGGCTTATAAAACTGACCAAATGGATCGAAGATCGTGGATTGAAACGAGCTGCGGTAACAAACGCTCCAAAAGAAAACGCAGAGCTCATGATATCGAAACTTGGTCTGACTGATTTCTTTCAAGCAGTGATTCTTGGCTCTGAATGTGAATTTCCCAAACCACACCCTGGACCTTACTTGAAGGCTCTTGAAGTGCTTAACGTGTCAAAGGAGCACACGCTAGTTTTCGAAGACTCGATCTCTGGGATAAAAGCTGGAGTTGCAGCTGGAATGCCAGTGATTGGACTGACTACAGGGAATCCAGCAAGCCTGCTTATGCAAGCAAAACCCGCTTTTCTCATCGAGAACTATGCGGATCCAAAACTGTGGGCTGTGTTGGAAGAACTTGATAACAAGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0042578 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050308 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

244

Amino Acids

26.73

Weight (kDa)

4.84

Isoelectric Point (pI)

35.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	23 - 201	2.2e-27	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	25 - 206	3.4e-30	Haloacid dehalogenase-like hydrolase
Hydrolase_like	PF13242	163 - 230	7.5e-06	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38740
fragaria_vesca	FvH4_5g21050 FvH4_5g21050 FvH4_5g21050 FvH4_5g21050 FvH4_5g21050
malus_domestica	MD06G1041200.v1.1 MD12G1227700.v1.1 MD15G1033000.v1.1
prunus_persica	Prupe.5G047500_v2.0.a1 Prupe.5G047600_v2.0.a1 Prupe.5G047600_v2.0.a1
pyrus_communis	pycom06g03420
rosa_chinensis	RchiOBHm_Chr7g0208111
rosa_laevigata	RLG00000003254
rosa_multiflora	Rmu_sc0000706.1_g000042
rosa_roxburghii	Rroxscaffold_3G00250810
rosa_rugosa	Rorug07G0101400 Rorug07G0101500 Rorug07G0101600 Rorug07G0101700
rosa_samantha	Rh7AG234500 Rh7BG231100 Rh7CG250700 Rh7DG241500
rosa_wichuraiana	Rw7G020080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	341
AccB7I	CCANNNNNTGG	3 cut(s)	332, 500, 614
AciI	CCGC	4 cut(s)	298, 386, 663, 686
AclWI	GGATC	4 cut(s)	104, 365, 683, 696
AcsI	RAATTY	3 cut(s)	185, 269, 482
AdeI	CACNNNGTG	1 cut(s)	101
AfiI	CCNNNNNNNGG	3 cut(s)	332, 500, 614
AflIII	ACRYGT	1 cut(s)	534
AgsI	TTSAA	6 cut(s)	146, 258, 376, 455, 514, 524
AjnI	CCWGG	1 cut(s)	499
AjuI	GAANNNNNNNTTGG	2 cut(s)	126, 158
AluBI	AGCT	6 cut(s)	59, 290, 383, 418, 587, 599
AluI	AGCT	6 cut(s)	59, 290, 383, 418, 587, 599
Alw21I	GWGCWC	2 cut(s)	420, 549
AlwI	GGATC	4 cut(s)	104, 365, 683, 696
ApeKI	GCWGC	2 cut(s)	383, 596
ApoI	RAATTY	3 cut(s)	185, 269, 482
Asp700I	GAANNNNTTC	3 cut(s)	8, 72, 141
AspS9I	GGNCC	1 cut(s)	503
AsuII	TTCGAA	1 cut(s)	561
AvaII	GGWCC	1 cut(s)	503
BamHI	GGATCC	1 cut(s)	688
BanII	GRGCYC	1 cut(s)	420
BbsI	GAAGAC	1 cut(s)	570
Bbv12I	GWGCWC	2 cut(s)	420, 549
BbvI	GCAGC	2 cut(s)	370, 608
BccI	CCATC	3 cut(s)	83, 122, 326
BcgI	CGANNNNNNTGC	2 cut(s)	665, 699
BciT130I	CCWGG	1 cut(s)	501
BfaI	CTAG	2 cut(s)	56, 554
BfmI	CTRYAG	1 cut(s)	624
BisI	GCNGC	2 cut(s)	384, 597
BlsI	GCNGC	2 cut(s)	385, 598
Bme1390I	CCNGG	1 cut(s)	501
Bme18I	GGWCC	1 cut(s)	503
BmgT120I	GGNCC	1 cut(s)	503
BmiI	GGNNCC	1 cut(s)	690
BmrFI	CCNGG	1 cut(s)	501
BpiI	GAAGAC	1 cut(s)	570
BpmI	CTGGAG	1 cut(s)	609
Bpu14I	TTCGAA	1 cut(s)	561
Bsa29I	ATCGAT	1 cut(s)	177
BsaBI	GATNNNNATC	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	499
BsaXI	ACNNNNNCTCC	2 cut(s)	382, 412
Bsc4I	CCNNNNNNNGG	3 cut(s)	332, 500, 614
Bse1I	ACTGG	1 cut(s)	608
Bse3DI	GCAATG	1 cut(s)	201
Bse8I	GATNNNNATC	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	501
BseCI	ATCGAT	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	499
BseGI	GGATG	1 cut(s)	114
BseJI	GATNNNNATC	1 cut(s)	21
BseLI	CCNNNNNNNGG	3 cut(s)	332, 500, 614
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	2 cut(s)	21, 120
BseNI	ACTGG	1 cut(s)	608
BseXI	GCAGC	2 cut(s)	370, 608
BshVI	ATCGAT	1 cut(s)	177
BsiHKAI	GWGCWC	2 cut(s)	420, 549
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	3 cut(s)	332, 500, 614
BsmFI	GGGAC	1 cut(s)	155
BsmI	GAATGC	1 cut(s)	609
Bsp119I	TTCGAA	1 cut(s)	561
Bsp1286I	GDGCHC	2 cut(s)	420, 549
Bsp143I	GATC	6 cut(s)	16, 109, 357, 364, 570, 688
BspACI	CCGC	4 cut(s)	298, 386, 663, 686
BspCNI	CTCAG	2 cut(s)	22, 119
BspDI	ATCGAT	1 cut(s)	177
BspHI	TCATGA	1 cut(s)	420
BspLI	GGNNCC	1 cut(s)	690
BspPI	GGATC	4 cut(s)	104, 365, 683, 696
BspT104I	TTCGAA	1 cut(s)	561
BsrDI	GCAATG	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	608
BssECI	CCNNGG	1 cut(s)	499
BssMI	GATC	6 cut(s)	16, 109, 357, 364, 570, 688
Bst2UI	CCWGG	1 cut(s)	501
Bst4CI	ACNGT	1 cut(s)	699
BstBI	TTCGAA	1 cut(s)	561
BstC8I	GCNNGC	3 cut(s)	640, 644, 654
BstDEI	CTNAG	2 cut(s)	30, 106
BstF5I	GGATG	1 cut(s)	114
BstKTI	GATC	6 cut(s)	19, 112, 360, 367, 573, 691
BstMBI	GATC	6 cut(s)	16, 109, 357, 364, 570, 688
BstMWI	GCNNNNNNNGC	2 cut(s)	593, 662
BstNI	CCWGG	1 cut(s)	501
BstSCI	CCNGG	1 cut(s)	499
BstSFI	CTRYAG	1 cut(s)	624
BstV1I	GCAGC	2 cut(s)	370, 608
BstV2I	GAAGAC	1 cut(s)	570
BstX2I	RGATCY	2 cut(s)	109, 688
BstXI	CCANNNNNNTGG	1 cut(s)	699
BstYI	RGATCY	2 cut(s)	109, 688
Bsu15I	ATCGAT	1 cut(s)	177
BsuTUI	ATCGAT	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	114
BtsI	GCAGTG	1 cut(s)	465
BtsIMutI	CAGTG	2 cut(s)	465, 615
Cac8I	GCNNGC	3 cut(s)	640, 644, 654
CciI	TCATGA	1 cut(s)	420
Cfr13I	GGNCC	1 cut(s)	503
ClaI	ATCGAT	1 cut(s)	177
CviAII	CATG	1 cut(s)	421
DdeI	CTNAG	2 cut(s)	30, 106
DpnI	GATC	6 cut(s)	18, 111, 359, 366, 572, 690
DpnII	GATC	6 cut(s)	16, 109, 357, 364, 570, 688
DraIII	CACNNNGTG	1 cut(s)	101
Ecl136II	GAGCTC	1 cut(s)	418
Eco24I	GRGCYC	1 cut(s)	420
Eco32I	GATATC	1 cut(s)	426
Eco47I	GGWCC	1 cut(s)	503
Eco53kI	GAGCTC	1 cut(s)	418
EcoICRI	GAGCTC	1 cut(s)	418
EcoRII	CCWGG	1 cut(s)	499
EcoRV	GATATC	1 cut(s)	426
EcoT38I	GRGCYC	1 cut(s)	420
FaeI	CATG	1 cut(s)	424
FaiI	YATR	4 cut(s)	341, 422, 650, 684
FalI	AAGNNNNNCTT	2 cut(s)	126, 158
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	1 cut(s)	420
FauI	CCCGC	1 cut(s)	670
Fnu4HI	GCNGC	2 cut(s)	384, 597
FokI	GGATG	1 cut(s)	101
FriOI	GRGCYC	1 cut(s)	420
Fsp4HI	GCNGC	2 cut(s)	384, 597
FspBI	CTAG	2 cut(s)	56, 554
GluI	GCNGC	2 cut(s)	384, 597
GsuI	CTGGAG	1 cut(s)	609
Hin1II	CATG	1 cut(s)	424
HinfI	GANTC	4 cut(s)	104, 463, 566, 631
Hpy188I	TCNGA	6 cut(s)	16, 31, 109, 223, 441, 475
Hpy188III	TCNNGA	5 cut(s)	146, 258, 421, 521, 676
HpyAV	CCTTC	4 cut(s)	36, 51, 139, 508
HpyCH4III	ACNGT	1 cut(s)	699
HpyCH4IV	ACGT	1 cut(s)	534
HpyCH4V	TGCA	3 cut(s)	311, 596, 652
HpyF10VI	GCNNNNNNNGC	2 cut(s)	593, 662
HpyF3I	CTNAG	2 cut(s)	30, 106
HpySE526I	ACGT	1 cut(s)	534
Hsp92II	CATG	1 cut(s)	424
Kzo9I	GATC	6 cut(s)	16, 109, 357, 364, 570, 688
LmnI	GCTCC	3 cut(s)	64, 403, 544
Lsp1109I	GCAGC	2 cut(s)	370, 608
MaeI	CTAG	2 cut(s)	56, 554
MaeII	ACGT	1 cut(s)	534
MaeIII	GTNAC	3 cut(s)	48, 101, 388
MalI	GATC	6 cut(s)	18, 111, 359, 366, 572, 690
MboI	GATC	6 cut(s)	16, 109, 357, 364, 570, 688
MboII	GAAGA	4 cut(s)	328, 374, 575, 725
MflI	RGATCY	2 cut(s)	109, 688
MhlI	GDGCHC	2 cut(s)	420, 549
MluCI	AATT	6 cut(s)	185, 217, 225, 269, 303, 482
MlyI	GAGTC	2 cut(s)	98, 560
MmeI	TCCRAC	1 cut(s)	690
MnlI	CCTC	1 cut(s)	254
MroXI	GAANNNNTTC	3 cut(s)	8, 72, 141
MseI	TTAA	5 cut(s)	21, 159, 266, 531, 733
MspA1I	CMGCKG	1 cut(s)	599
MspR9I	CCNGG	1 cut(s)	501
Mva1269I	GAATGC	1 cut(s)	609
MvaI	CCWGG	1 cut(s)	501
MwoI	GCNNNNNNNGC	2 cut(s)	593, 662
NdeII	GATC	6 cut(s)	16, 109, 357, 364, 570, 688
NlaIII	CATG	1 cut(s)	424
NlaIV	GGNNCC	1 cut(s)	690
NmuCI	GTSAC	2 cut(s)	48, 101
NspV	TTCGAA	1 cut(s)	561
PagI	TCATGA	1 cut(s)	420
PctI	GAATGC	1 cut(s)	609
PdmI	GAANNNNTTC	3 cut(s)	8, 72, 141
PfeI	GAWTC	2 cut(s)	463, 631
PflMI	CCANNNNNTGG	3 cut(s)	332, 500, 614
PkrI	GCNGC	2 cut(s)	385, 598
PleI	GAGTC	2 cut(s)	98, 560
PpsI	GAGTC	2 cut(s)	98, 560
PsiI	TTATAA	1 cut(s)	341
Psp124BI	GAGCTC	1 cut(s)	420
Psp6I	CCWGG	1 cut(s)	499
PspGI	CCWGG	1 cut(s)	499
PspN4I	GGNNCC	1 cut(s)	690
PspPI	GGNCC	1 cut(s)	503
PsuI	RGATCY	2 cut(s)	109, 688
PvuII	CAGCTG	1 cut(s)	599
SacI	GAGCTC	1 cut(s)	420
SaqAI	TTAA	5 cut(s)	21, 159, 266, 531, 733
SatI	GCNGC	2 cut(s)	384, 597
Sau3AI	GATC	6 cut(s)	16, 109, 357, 364, 570, 688
Sau96I	GGNCC	1 cut(s)	503
SchI	GAGTC	2 cut(s)	98, 560
ScrFI	CCNGG	1 cut(s)	501
SduI	GDGCHC	2 cut(s)	420, 549
SfcI	CTRYAG	1 cut(s)	624
SfuI	TTCGAA	1 cut(s)	561
SinI	GGWCC	1 cut(s)	503
Sse9I	AATT	6 cut(s)	185, 217, 225, 269, 303, 482
SsiI	CCGC	4 cut(s)	298, 386, 663, 686
SspMI	CTAG	2 cut(s)	56, 554
SstI	GAGCTC	1 cut(s)	420
StyD4I	CCNGG	1 cut(s)	499
TaaI	ACNGT	1 cut(s)	699
TaiI	ACGT	1 cut(s)	537
TaqI	TCGA	6 cut(s)	177, 360, 428, 561, 569, 675
TasI	AATT	6 cut(s)	185, 217, 225, 269, 303, 482
TfiI	GAWTC	2 cut(s)	463, 631
Tru1I	TTAA	5 cut(s)	21, 159, 266, 531, 733
Tru9I	TTAA	5 cut(s)	21, 159, 266, 531, 733
TscAI	CASTG	2 cut(s)	465, 615
TseFI	GTSAC	2 cut(s)	48, 101
TseI	GCWGC	2 cut(s)	383, 596
Tsp45I	GTSAC	2 cut(s)	48, 101
TspDTI	ATGAA	2 cut(s)	17, 294
TspRI	CASTG	2 cut(s)	465, 615
Van91I	CCANNNNNTGG	3 cut(s)	332, 500, 614
VpaK11BI	GGWCC	1 cut(s)	503
XapI	RAATTY	3 cut(s)	185, 269, 482
XmnI	GAANNNNTTC	3 cut(s)	8, 72, 141
XspI	CTAG	2 cut(s)	56, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.