Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006690

Physical Location & Seq

Genomic Coordinates Forward (+)

46180081 .. 46182419

Gene Structure 2339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003254

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGACAGCTTCTTCTGGTGAAAGCTCTGTGGACAGCAAAAATGCACTCTCTGGCCTTGCTCCACTAGAAGCAGTACTCTTTGATATTGATGGAACTGTATGTGATTCAGATCCAATTCACTGTGCTGCCTTCCGTGAAATGCTTCAAGAGATAGGTTTCAATGGAGGGGTTCCAATTACTGAGGATTACTATATTGAGAATATTGCTGGTAAGCACAATGATGATGTTGCCAGGCTACTTTTTCCTGATGATTTTGAACGAGGCATAAAGTTCACAGATGAGAAGGAAGCTTTGTTTCGTAGATTGGTTGGAGACAAATTGAAGCCAGTGAGTGGTCTCGATAAAGTGAGGAAATGGGTTGAAGATCGTGGATTGAAACGGGCTGCAGTTACTAATGCTCCCAAGCCAAATGCTGAACTAATGATCTCTAGCCTTGGCCTCTCGGATTTTTTCCAAGCTGTTATTCTTGGGAGTGAGTGTGAGCATGCCAAACCTCACCCAGAGCCGTACTTGAAGGGCCTTGAAGCGATCAAGGCATCAAAAGAGCACACTTTCATCTTCGAGGATTCTGTTTCGGGGATCAAAGCTGGAGTTGCAGCTGGTATGCCGGTTATTGGTTTAACCACTGGAAATCCAGAACACATATTATTGGAAGCAAAACCCACCCTTATTATCAAGAACTATGATGATCCAAAATTGTGGGCGGCATTAGAAGAGCTTGATAAGAAGAGTGGTACTAGTAGTGCGACAAGTGGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003850 GO:0004346 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0042578 GO:0044237 GO:0050308 GO:0050309

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

254

Amino Acids

27.33

Weight (kDa)

5.0

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	23 - 201	5.2e-25	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	25 - 206	1.7e-28	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38740
fragaria_vesca	FvH4_5g21050 FvH4_5g21050 FvH4_5g21050 FvH4_5g21050 FvH4_5g21050
malus_domestica	MD06G1041200.v1.1 MD12G1227700.v1.1 MD15G1033000.v1.1
prunus_persica	Prupe.5G047500_v2.0.a1 Prupe.5G047600_v2.0.a1 Prupe.5G047600_v2.0.a1
pyrus_communis	pycom06g03420
rosa_chinensis	RchiOBHm_Chr7g0208111
rosa_laevigata	RLG00000003254
rosa_multiflora	Rmu_sc0000706.1_g000042
rosa_roxburghii	Rroxscaffold_3G00250810
rosa_rugosa	Rorug07G0101400 Rorug07G0101500 Rorug07G0101600 Rorug07G0101700
rosa_samantha	Rh7AG234500 Rh7BG231100 Rh7CG250700 Rh7DG241500
rosa_wichuraiana	Rw7G020080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	332
AciI	CCGC	1 cut(s)	704
AclWI	GGATC	3 cut(s)	104, 587, 683
AfaI	GTAC	3 cut(s)	75, 509, 736
AfiI	CCNNNNNNNGG	2 cut(s)	332, 614
AgsI	TTSAA	8 cut(s)	146, 160, 257, 322, 362, 376, 514, 524
AhlI	ACTAGT	1 cut(s)	737
AjnI	CCWGG	1 cut(s)	230
AjuI	GAANNNNNNNTTGG	2 cut(s)	447, 479
AluBI	AGCT	7 cut(s)	8, 24, 290, 458, 587, 599, 718
AluI	AGCT	7 cut(s)	8, 24, 290, 458, 587, 599, 718
Alw21I	GWGCWC	1 cut(s)	549
Alw26I	GTCTC	2 cut(s)	306, 341
AlwI	GGATC	3 cut(s)	104, 587, 683
AoxI	GGCC	3 cut(s)	52, 436, 517
ApeKI	GCWGC	3 cut(s)	125, 383, 596
Asp700I	GAANNNNTTC	1 cut(s)	141
AspS9I	GGNCC	1 cut(s)	517
AsuHPI	GGTGA	2 cut(s)	29, 488
Bbv12I	GWGCWC	1 cut(s)	549
BbvI	GCAGC	3 cut(s)	112, 370, 608
BccI	CCATC	1 cut(s)	83
BceAI	ACGGC	1 cut(s)	490
BciT130I	CCWGG	1 cut(s)	232
BcoDI	GTCTC	2 cut(s)	306, 341
BcuI	ACTAGT	1 cut(s)	737
BfaI	CTAG	3 cut(s)	65, 429, 738
BfmI	CTRYAG	1 cut(s)	384
BisI	GCNGC	4 cut(s)	126, 384, 597, 705
BlsI	GCNGC	4 cut(s)	127, 385, 598, 706
BmcAI	AGTACT	1 cut(s)	75
Bme1390I	CCNGG	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	517
BmiI	GGNNCC	1 cut(s)	171
BmrFI	CCNGG	1 cut(s)	232
BmsI	GCATC	1 cut(s)	545
BpmI	CTGGAG	1 cut(s)	609
BsaBI	GATNNNNATC	1 cut(s)	108
BsaI	GGTCTC	1 cut(s)	341
BsaJI	CCNNGG	1 cut(s)	433
BsaXI	ACNNNNNCTCC	4 cut(s)	382, 412, 463, 493
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 614
Bse118I	RCCGGY	1 cut(s)	607
Bse1I	ACTGG	2 cut(s)	326, 631
Bse8I	GATNNNNATC	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	1 cut(s)	433
BseJI	GATNNNNATC	1 cut(s)	108
BseLI	CCNNNNNNNGG	2 cut(s)	332, 614
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	2 cut(s)	326, 631
BseXI	GCAGC	3 cut(s)	112, 370, 608
BshFI	GGCC	3 cut(s)	54, 438, 519
BsiHKAI	GWGCWC	1 cut(s)	549
BsiSI	CCGG	1 cut(s)	608
BslI	CCNNNNNNNGG	2 cut(s)	332, 614
BsmAI	GTCTC	2 cut(s)	306, 341
BsnI	GGCC	3 cut(s)	54, 438, 519
Bso31I	GGTCTC	1 cut(s)	341
Bsp1286I	GDGCHC	1 cut(s)	549
Bsp143I	GATC	6 cut(s)	109, 364, 423, 528, 579, 688
BspACI	CCGC	1 cut(s)	704
BspANI	GGCC	3 cut(s)	54, 438, 519
BspCNI	CTCAG	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	171
BspMAI	CTGCAG	1 cut(s)	388
BspPI	GGATC	3 cut(s)	104, 587, 683
BspQI	GCTCTTC	1 cut(s)	708
BspTNI	GGTCTC	1 cut(s)	341
BsrFI	RCCGGY	1 cut(s)	607
BsrI	ACTGG	2 cut(s)	326, 631
BssAI	RCCGGY	1 cut(s)	607
BssECI	CCNNGG	1 cut(s)	433
BssMI	GATC	6 cut(s)	109, 364, 423, 528, 579, 688
BssT1I	CCWWGG	1 cut(s)	433
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	2 cut(s)	97, 122
Bst6I	CTCTTC	2 cut(s)	708, 722
BstC8I	GCNNGC	1 cut(s)	486
BstDEI	CTNAG	1 cut(s)	180
BstKTI	GATC	6 cut(s)	112, 367, 426, 531, 582, 691
BstMAI	GTCTC	2 cut(s)	306, 341
BstMBI	GATC	6 cut(s)	109, 364, 423, 528, 579, 688
BstMWI	GCNNNNNNNGC	2 cut(s)	533, 593
BstNI	CCWGG	1 cut(s)	232
BstNSI	RCATGY	1 cut(s)	488
BstSCI	CCNGG	1 cut(s)	230
BstSFI	CTRYAG	1 cut(s)	384
BstV1I	GCAGC	3 cut(s)	112, 370, 608
BstX2I	RGATCY	1 cut(s)	109
BstXI	CCANNNNNNTGG	1 cut(s)	699
BstYI	RGATCY	1 cut(s)	109
BsuRI	GGCC	3 cut(s)	54, 438, 519
BtsIMutI	CAGTG	3 cut(s)	118, 333, 624
Cac8I	GCNNGC	1 cut(s)	486
Cfr10I	RCCGGY	1 cut(s)	607
Cfr13I	GGNCC	1 cut(s)	517
Csp6I	GTAC	3 cut(s)	74, 508, 735
CviAII	CATG	1 cut(s)	485
CviQI	GTAC	3 cut(s)	74, 508, 735
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	6 cut(s)	111, 366, 425, 530, 581, 690
DpnII	GATC	6 cut(s)	109, 364, 423, 528, 579, 688
Eam1104I	CTCTTC	2 cut(s)	708, 722
EarI	CTCTTC	2 cut(s)	708, 722
Eco130I	CCWWGG	1 cut(s)	433
Eco31I	GGTCTC	1 cut(s)	341
EcoO109I	RGGNCCY	1 cut(s)	517
EcoRII	CCWGG	1 cut(s)	230
EcoT14I	CCWWGG	1 cut(s)	433
ErhI	CCWWGG	1 cut(s)	433
FaeI	CATG	1 cut(s)	488
FaiI	YATR	7 cut(s)	100, 192, 266, 486, 605, 644, 684
FalI	AAGNNNNNCTT	1 cut(s)	742
FatI	CATG	1 cut(s)	484
Fnu4HI	GCNGC	4 cut(s)	126, 384, 597, 705
Fsp4HI	GCNGC	4 cut(s)	126, 384, 597, 705
FspBI	CTAG	3 cut(s)	65, 429, 738
GluI	GCNGC	4 cut(s)	126, 384, 597, 705
GsuI	CTGGAG	1 cut(s)	609
HaeIII	GGCC	3 cut(s)	54, 438, 519
HapII	CCGG	1 cut(s)	608
Hin1II	CATG	1 cut(s)	488
HindIII	AAGCTT	1 cut(s)	288
HinfI	GANTC	2 cut(s)	104, 566
HpaII	CCGG	1 cut(s)	608
HphI	GGTGA	2 cut(s)	29, 488
Hpy166II	GTNNAC	2 cut(s)	31, 273
Hpy188I	TCNGA	2 cut(s)	109, 445
Hpy188III	TCNNGA	5 cut(s)	146, 245, 338, 635, 676
Hpy8I	GTNNAC	2 cut(s)	31, 273
HpyAV	CCTTC	3 cut(s)	139, 277, 508
HpyCH4III	ACNGT	2 cut(s)	97, 122
HpyCH4V	TGCA	3 cut(s)	44, 386, 596
HpyF10VI	GCNNNNNNNGC	2 cut(s)	533, 593
HpyF3I	CTNAG	1 cut(s)	180
Hsp92II	CATG	1 cut(s)	488
Kzo9I	GATC	6 cut(s)	109, 364, 423, 528, 579, 688
LguI	GCTCTTC	1 cut(s)	708
LmnI	GCTCC	2 cut(s)	64, 403
Lsp1109I	GCAGC	3 cut(s)	112, 370, 608
LweI	GCATC	1 cut(s)	545
MaeI	CTAG	3 cut(s)	65, 429, 738
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	6 cut(s)	111, 366, 425, 530, 581, 690
MboI	GATC	6 cut(s)	109, 364, 423, 528, 579, 688
MboII	GAAGA	5 cut(s)	3, 374, 550, 725, 739
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	549
MluCI	AATT	4 cut(s)	114, 174, 317, 695
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	7 cut(s)	158, 175, 254, 342, 449, 504, 556
MroXI	GAANNNNTTC	1 cut(s)	141
MseI	TTAA	2 cut(s)	620, 760
MslI	CAYNNNNRTG	1 cut(s)	219
MspA1I	CMGCKG	1 cut(s)	599
MspI	CCGG	1 cut(s)	608
MspR9I	CCNGG	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	2 cut(s)	533, 593
NdeII	GATC	6 cut(s)	109, 364, 423, 528, 579, 688
NlaIII	CATG	1 cut(s)	488
NlaIV	GGNNCC	1 cut(s)	171
NspI	RCATGY	1 cut(s)	488
PaeI	GCATGC	1 cut(s)	488
PciSI	GCTCTTC	1 cut(s)	708
PdmI	GAANNNNTTC	1 cut(s)	141
PfeI	GAWTC	2 cut(s)	104, 566
PflMI	CCANNNNNTGG	1 cut(s)	332
PkrI	GCNGC	4 cut(s)	127, 385, 598, 706
Psp6I	CCWGG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	517
PstI	CTGCAG	1 cut(s)	388
PsuI	RGATCY	1 cut(s)	109
PvuII	CAGCTG	1 cut(s)	599
RsaI	GTAC	3 cut(s)	75, 509, 736
RsaNI	GTAC	3 cut(s)	74, 508, 735
RseI	CAYNNNNRTG	1 cut(s)	219
SapI	GCTCTTC	1 cut(s)	708
SaqAI	TTAA	2 cut(s)	620, 760
SatI	GCNGC	4 cut(s)	126, 384, 597, 705
Sau3AI	GATC	6 cut(s)	109, 364, 423, 528, 579, 688
Sau96I	GGNCC	1 cut(s)	517
ScaI	AGTACT	1 cut(s)	75
ScrFI	CCNGG	1 cut(s)	232
SduI	GDGCHC	1 cut(s)	549
SetI	ASST	9 cut(s)	10, 26, 157, 292, 460, 496, 589, 601, 720
SfaNI	GCATC	1 cut(s)	545
SfcI	CTRYAG	1 cut(s)	384
SmiMI	CAYNNNNRTG	1 cut(s)	219
SpeI	ACTAGT	1 cut(s)	737
SphI	GCATGC	1 cut(s)	488
Sse9I	AATT	4 cut(s)	114, 174, 317, 695
SsiI	CCGC	1 cut(s)	704
SspI	AATATT	1 cut(s)	202
SspMI	CTAG	3 cut(s)	65, 429, 738
StyD4I	CCNGG	1 cut(s)	230
StyI	CCWWGG	1 cut(s)	433
TaaI	ACNGT	2 cut(s)	97, 122
TaqI	TCGA	2 cut(s)	339, 561
TasI	AATT	4 cut(s)	114, 174, 317, 695
TatI	WGTACW	1 cut(s)	73
TauI	GCSGC	1 cut(s)	707
TfiI	GAWTC	2 cut(s)	104, 566
Tru1I	TTAA	2 cut(s)	620, 760
Tru9I	TTAA	2 cut(s)	620, 760
TscAI	CASTG	3 cut(s)	125, 333, 631
TseI	GCWGC	3 cut(s)	125, 383, 596
TspDTI	ATGAA	1 cut(s)	544
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	3 cut(s)	125, 333, 631
Van91I	CCANNNNNTGG	1 cut(s)	332
XceI	RCATGY	1 cut(s)	488
XmnI	GAANNNNTTC	1 cut(s)	141
XspI	CTAG	3 cut(s)	65, 429, 738
ZrmI	AGTACT	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.