Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0006690

Physical Location & Seq

Genomic Coordinates Reverse (-)

24831771 .. 24835029

Gene Structure 3259 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG241500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGCTTCAAGAGATAGGTTTCAATGGAGGGGTTCCAATTACTGAGGATTACTATATTGAGAATATTGCTGGTAAGCACAATGATGATGTTGCCAGGCTACTATTTCCTGATGATTTTGAACAAGGCATAAAGTTCACAGATGAGAAGGAAGCTTTGTTTCGTAGATTGGTTGGAGACAAATTGAAGCCAGTGAGTGGTCTTGATAAAGTGAGGAAATGGGTTGAAGATCGTGGATTGAAACGGGCTGCAGTTACTAATGCTCCCAAGCCAAATGCTGAACTAATGATCTCTAGCCTTGGCCTCTCGGATTTTTTCCAAGCTGTTATTCTTGGGAGTGAGTGTGAGCATGCCAAACCTCACCCAGAGCCGTACTTGAAGGGCCTTGAAGCGATCAAGGCATCAAAAGAGCACACTTTCATCTTCGAGGATTCTGTTTCGGGGATCAAAGCTGGAGTTGCAGCTGGTATGCCGGTTATTGGTTTAACCACCGGAAATCCAGAACACATATTATTGGAAGCAAAACCCACCCTTATTATCAAGAACTATGATGATCCAAAATTGTGGGCAGCATTAGAAGAGCTTGATAAGAAGAGTGGTACTAGTAGTGCGACAAGTGGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003850 GO:0004346 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0042578 GO:0044237 GO:0050308 GO:0050309

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

207

Amino Acids

22.59

Weight (kDa)

5.31

Isoelectric Point (pI)

35.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAD_2	PF13419	13 - 160	3.6e-21	Haloacid dehalogenase-like hydrolase
Hydrolase	PF00702	44 - 155	3.6e-17	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38740
fragaria_vesca	FvH4_5g21050 FvH4_5g21050 FvH4_5g21050 FvH4_5g21050 FvH4_5g21050
malus_domestica	MD06G1041200.v1.1 MD12G1227700.v1.1 MD15G1033000.v1.1
prunus_persica	Prupe.5G047500_v2.0.a1 Prupe.5G047600_v2.0.a1 Prupe.5G047600_v2.0.a1
pyrus_communis	pycom06g03420
rosa_chinensis	RchiOBHm_Chr7g0208111
rosa_laevigata	RLG00000003254
rosa_multiflora	Rmu_sc0000706.1_g000042
rosa_roxburghii	Rroxscaffold_3G00250810
rosa_rugosa	Rorug07G0101400 Rorug07G0101500 Rorug07G0101600 Rorug07G0101700
rosa_samantha	Rh7AG234500 Rh7BG231100 Rh7CG250700 Rh7DG241500
rosa_wichuraiana	Rw7G020080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	194
AclWI	GGATC	2 cut(s)	449, 545
AfaI	GTAC	2 cut(s)	371, 598
AfiI	CCNNNNNNNGG	2 cut(s)	194, 476
AgsI	TTSAA	8 cut(s)	8, 22, 119, 184, 224, 238, 376, 386
AhlI	ACTAGT	1 cut(s)	599
AjnI	CCWGG	1 cut(s)	92
AjuI	GAANNNNNNNTTGG	2 cut(s)	309, 341
AluBI	AGCT	5 cut(s)	152, 320, 449, 461, 580
AluI	AGCT	5 cut(s)	152, 320, 449, 461, 580
Alw21I	GWGCWC	1 cut(s)	411
Alw26I	GTCTC	1 cut(s)	168
AlwI	GGATC	2 cut(s)	449, 545
AoxI	GGCC	2 cut(s)	298, 379
ApeKI	GCWGC	3 cut(s)	245, 458, 566
AspS9I	GGNCC	1 cut(s)	379
AsuHPI	GGTGA	1 cut(s)	350
Bbv12I	GWGCWC	1 cut(s)	411
BbvI	GCAGC	3 cut(s)	232, 470, 578
BceAI	ACGGC	1 cut(s)	352
BciT130I	CCWGG	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	168
BcuI	ACTAGT	1 cut(s)	599
BfaI	CTAG	2 cut(s)	291, 600
BfmI	CTRYAG	1 cut(s)	246
BisI	GCNGC	3 cut(s)	246, 459, 567
BlsI	GCNGC	3 cut(s)	247, 460, 568
Bme1390I	CCNGG	1 cut(s)	94
BmgT120I	GGNCC	1 cut(s)	379
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	94
BmsI	GCATC	1 cut(s)	407
BpmI	CTGGAG	1 cut(s)	471
BsaJI	CCNNGG	1 cut(s)	295
BsaWI	WCCGGW	1 cut(s)	488
BsaXI	ACNNNNNCTCC	4 cut(s)	244, 274, 325, 355
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 476
Bse118I	RCCGGY	1 cut(s)	469
Bse1I	ACTGG	1 cut(s)	188
BseBI	CCWGG	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	295
BseLI	CCNNNNNNNGG	2 cut(s)	194, 476
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	188
BseXI	GCAGC	3 cut(s)	232, 470, 578
BshFI	GGCC	2 cut(s)	300, 381
BsiHKAI	GWGCWC	1 cut(s)	411
BsiSI	CCGG	2 cut(s)	470, 489
BslI	CCNNNNNNNGG	2 cut(s)	194, 476
BsmAI	GTCTC	1 cut(s)	168
BsnI	GGCC	2 cut(s)	300, 381
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp143I	GATC	5 cut(s)	226, 285, 390, 441, 550
BspANI	GGCC	2 cut(s)	300, 381
BspCNI	CTCAG	1 cut(s)	34
BspLI	GGNNCC	1 cut(s)	33
BspMAI	CTGCAG	1 cut(s)	250
BspPI	GGATC	2 cut(s)	449, 545
BspQI	GCTCTTC	1 cut(s)	570
BsrFI	RCCGGY	1 cut(s)	469
BsrI	ACTGG	1 cut(s)	188
BssAI	RCCGGY	1 cut(s)	469
BssECI	CCNNGG	1 cut(s)	295
BssMI	GATC	5 cut(s)	226, 285, 390, 441, 550
BssT1I	CCWWGG	1 cut(s)	295
Bst2UI	CCWGG	1 cut(s)	94
Bst6I	CTCTTC	2 cut(s)	570, 584
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	1 cut(s)	42
BstKTI	GATC	5 cut(s)	229, 288, 393, 444, 553
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	5 cut(s)	226, 285, 390, 441, 550
BstMWI	GCNNNNNNNGC	2 cut(s)	395, 455
BstNI	CCWGG	1 cut(s)	94
BstNSI	RCATGY	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	92
BstSFI	CTRYAG	1 cut(s)	246
BstV1I	GCAGC	3 cut(s)	232, 470, 578
BstXI	CCANNNNNNTGG	1 cut(s)	561
BsuRI	GGCC	2 cut(s)	300, 381
BtsIMutI	CAGTG	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	348
Cfr10I	RCCGGY	1 cut(s)	469
Cfr13I	GGNCC	1 cut(s)	379
Csp6I	GTAC	2 cut(s)	370, 597
CviAII	CATG	1 cut(s)	347
CviQI	GTAC	2 cut(s)	370, 597
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	5 cut(s)	228, 287, 392, 443, 552
DpnII	GATC	5 cut(s)	226, 285, 390, 441, 550
Eam1104I	CTCTTC	2 cut(s)	570, 584
EarI	CTCTTC	2 cut(s)	570, 584
Eco130I	CCWWGG	1 cut(s)	295
EcoO109I	RGGNCCY	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	92
EcoT14I	CCWWGG	1 cut(s)	295
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	1 cut(s)	350
FaiI	YATR	6 cut(s)	54, 128, 348, 467, 506, 546
FalI	AAGNNNNNCTT	1 cut(s)	604
FatI	CATG	1 cut(s)	346
Fnu4HI	GCNGC	3 cut(s)	246, 459, 567
Fsp4HI	GCNGC	3 cut(s)	246, 459, 567
FspBI	CTAG	2 cut(s)	291, 600
GluI	GCNGC	3 cut(s)	246, 459, 567
GsuI	CTGGAG	1 cut(s)	471
HaeIII	GGCC	2 cut(s)	300, 381
HapII	CCGG	2 cut(s)	470, 489
Hin1II	CATG	1 cut(s)	350
HindIII	AAGCTT	1 cut(s)	150
HinfI	GANTC	1 cut(s)	428
HpaII	CCGG	2 cut(s)	470, 489
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188I	TCNGA	1 cut(s)	307
Hpy188III	TCNNGA	5 cut(s)	8, 107, 200, 497, 538
Hpy8I	GTNNAC	1 cut(s)	135
HpyAV	CCTTC	2 cut(s)	139, 370
HpyCH4V	TGCA	2 cut(s)	248, 458
HpyF10VI	GCNNNNNNNGC	2 cut(s)	395, 455
HpyF3I	CTNAG	1 cut(s)	42
Hsp92II	CATG	1 cut(s)	350
Kzo9I	GATC	5 cut(s)	226, 285, 390, 441, 550
LguI	GCTCTTC	1 cut(s)	570
LmnI	GCTCC	1 cut(s)	265
Lsp1109I	GCAGC	3 cut(s)	232, 470, 578
LweI	GCATC	1 cut(s)	407
MaeI	CTAG	2 cut(s)	291, 600
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	5 cut(s)	228, 287, 392, 443, 552
MboI	GATC	5 cut(s)	226, 285, 390, 441, 550
MboII	GAAGA	4 cut(s)	236, 412, 587, 601
MhlI	GDGCHC	1 cut(s)	411
MluCI	AATT	3 cut(s)	36, 179, 557
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	6 cut(s)	20, 37, 204, 311, 366, 418
MseI	TTAA	2 cut(s)	482, 622
MslI	CAYNNNNRTG	1 cut(s)	81
MspA1I	CMGCKG	1 cut(s)	461
MspI	CCGG	2 cut(s)	470, 489
MspR9I	CCNGG	1 cut(s)	94
MvaI	CCWGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	2 cut(s)	395, 455
NdeII	GATC	5 cut(s)	226, 285, 390, 441, 550
NlaIII	CATG	1 cut(s)	350
NlaIV	GGNNCC	1 cut(s)	33
NspI	RCATGY	1 cut(s)	350
PaeI	GCATGC	1 cut(s)	350
PciSI	GCTCTTC	1 cut(s)	570
PfeI	GAWTC	1 cut(s)	428
PflMI	CCANNNNNTGG	1 cut(s)	194
PkrI	GCNGC	3 cut(s)	247, 460, 568
Psp6I	CCWGG	1 cut(s)	92
PspGI	CCWGG	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	379
PstI	CTGCAG	1 cut(s)	250
PvuII	CAGCTG	1 cut(s)	461
RsaI	GTAC	2 cut(s)	371, 598
RsaNI	GTAC	2 cut(s)	370, 597
RseI	CAYNNNNRTG	1 cut(s)	81
SapI	GCTCTTC	1 cut(s)	570
SaqAI	TTAA	2 cut(s)	482, 622
SatI	GCNGC	3 cut(s)	246, 459, 567
Sau3AI	GATC	5 cut(s)	226, 285, 390, 441, 550
Sau96I	GGNCC	1 cut(s)	379
ScrFI	CCNGG	1 cut(s)	94
SduI	GDGCHC	1 cut(s)	411
SetI	ASST	7 cut(s)	19, 154, 322, 358, 451, 463, 582
SfaNI	GCATC	1 cut(s)	407
SfcI	CTRYAG	1 cut(s)	246
SmiMI	CAYNNNNRTG	1 cut(s)	81
SpeI	ACTAGT	1 cut(s)	599
SphI	GCATGC	1 cut(s)	350
Sse9I	AATT	3 cut(s)	36, 179, 557
SspI	AATATT	1 cut(s)	64
SspMI	CTAG	2 cut(s)	291, 600
StyD4I	CCNGG	1 cut(s)	92
StyI	CCWWGG	1 cut(s)	295
TaqI	TCGA	1 cut(s)	423
TasI	AATT	3 cut(s)	36, 179, 557
TfiI	GAWTC	1 cut(s)	428
Tru1I	TTAA	2 cut(s)	482, 622
Tru9I	TTAA	2 cut(s)	482, 622
TscAI	CASTG	1 cut(s)	195
TseI	GCWGC	3 cut(s)	245, 458, 566
TspDTI	ATGAA	1 cut(s)	406
TspRI	CASTG	1 cut(s)	195
Van91I	CCANNNNNTGG	1 cut(s)	194
XceI	RCATGY	1 cut(s)	350
XspI	CTAG	2 cut(s)	291, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.