Rorug07G0101700

Haloacid dehalogenase-like hydrolase domain-containing protein Sgpp

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
8014848 .. 8016322
1475 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0101700.1

Sequence Viewer

Length: 1272 bp
ATGAGTCTGGGGACCGATTGTCCTCCAATATTCCATAATAACTCTGGTGATGAATTCTCCATCTGTGAGGAGAGGACCACAAAAAGGCCTAAGGTAGAAGAAGAGATTAATGATCATCATCTGGGAACAACAAGCATACATCAGATAGAGATCAAAGATACTTGTGCTTCTTGTTTGTGTGATGATTGTGCCAACTTTGCTGTGACATTCAGTTTTAAATATAACGATGGTGAAATTGAGCTTTTACGCAAGGTCGCCACTCACGAAATACTCCACCGCAGAAAACTCCAGTTGGTACTCAATCTCAATCACACCTTGTTGAGAGTCGCCGGTATCGATGATCTGACCCTGGAAGAAGAAGCATATTTAGATACCGAATTCACCGATGATCCTCTGCAGCAAGATATTCTCATAGTGACAGTTCCTCCCAAAATGAAATCTATGCTTCTCAAGTTTAGGCCCTTTGTTCAAACCTTTCTCAAGGAAGCCAGTGACATGTTTGAGATGAATGTGTACTCAAATTCCCCTCTATCTCTTGTGCGGGAAATGATTCAGCTACTGGATCCAAGAAATGAGTACTTCGGTTCTAGGGTGTTTTCGCGAGACGATTTTTGCAGCACCCACCCGAAAAACAAGTGCCTCGATGTTTTGCTTGCTCAAGAGTCTGCTGTTTTGATCCTTGATCATAAACTAGAGGCATGGAGGGAGCAAAATCAAAATAATGTAATGCCCATGCAAGAGTATTTTTTCTGTGAAGAAGAGGAGAGCGAGCTCAGATCTTGTTGCGAGATGGAAACTAATGAAGGGTATTATCTTGCACTTATTCTTCAACGTCTTAAGCAGATACACAATAGGTTCTTTGATGACGAAGTAATATGTGACAGACTTATCGACAGAGATGTGAGAAAGGTGTTAGAAACTCTTCGGGGGTCCGTCTTGGGAGGGTGTAAAATTGCTTTCGATCCTCTTCAGGCCGATAAGCTACAGTTGTGGAAGATGGCAGAGCAGTTGGGAGCTACTTGTGTTGAACAAATGGACGCATCGGTCACACATGTGGTTGCAGCTCATGCTGGAACACCGGAATCTCGTTGGGCACTGGAAGAGAAAAAGTTCTTGGTCTATCCGAGTTGGATTGAAGCATCACATTGTATGTGGCAGAAGTGTCATGAAGACAGGTTTCCTGTTTTTGAGGATGACCAAATTGGGCAAGACCACAAGAGAGACAAGAAAAAGAAGAGTAAAAAGGAAGAGATTTTAGCAACATTGTCTTAG
Functional Annotation

Protein Analysis

423

Amino Acids

49.07

Weight (kDa)

5.08

Isoelectric Point (pI)

56.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 98 - 263 1.1e-20 NLI interacting factor-like phosphatase
BRCT PF00533 312 - 381 2e-06 BRCA1 C Terminus (BRCT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1043
AccII CGCG 1 cut(s) 601
AciI CCGC 2 cut(s) 277, 541
AclWI GGATC 5 cut(s) 383, 557, 570, 670, 956
AcsI RAATTY 3 cut(s) 53, 377, 520
AcuI CTGAAG 1 cut(s) 953
AfaI GTAC 3 cut(s) 297, 515, 578
AfiI CCNNNNNNNGG 1 cut(s) 84
AflII CTTAAG 1 cut(s) 836
AflIII ACRYGT 2 cut(s) 495, 1051
AgsI TTSAA 4 cut(s) 470, 830, 1028, 1136
AhdI GACNNNNNGTC 1 cut(s) 18
AjnI CCWGG 1 cut(s) 348
AjuI GAANNNNNNNTTGG 2 cut(s) 1097, 1129
AleI CACNNNNGTG 1 cut(s) 1052
AluBI AGCT 6 cut(s) 241, 556, 772, 982, 1016, 1064
AluI AGCT 6 cut(s) 241, 556, 772, 982, 1016, 1064
Alw21I GWGCWC 1 cut(s) 774
Alw26I GTCTC 2 cut(s) 597, 1215
AlwI GGATC 5 cut(s) 383, 557, 570, 670, 956
AlwNI CAGNNNCTG 1 cut(s) 559
AoxI GGCC 3 cut(s) 86, 458, 972
ApeKI GCWGC 3 cut(s) 397, 615, 1061
ApoI RAATTY 3 cut(s) 53, 377, 520
AseI ATTAAT 1 cut(s) 108
Asp700I GAANNNNTTC 3 cut(s) 549, 921, 1109
AspS9I GGNCC 4 cut(s) 12, 75, 459, 930
AsuHPI GGTGA 3 cut(s) 59, 242, 373
AvaII GGWCC 3 cut(s) 12, 75, 930
AxyI CCTNAGG 1 cut(s) 90
BaeGI GKGCMC 1 cut(s) 1096
BamHI GGATCC 1 cut(s) 562
BanII GRGCYC 1 cut(s) 774
BbsI GAAGAC 1 cut(s) 1176
Bbv12I GWGCWC 1 cut(s) 774
BbvI GCAGC 3 cut(s) 409, 627, 1073
BccI CCATC 4 cut(s) 68, 221, 784, 991
BciT130I CCWGG 1 cut(s) 350
BclI TGATCA 2 cut(s) 112, 682
BcoDI GTCTC 2 cut(s) 597, 1215
BfaI CTAG 2 cut(s) 588, 692
BfmI CTRYAG 2 cut(s) 395, 983
BfrI CTTAAG 1 cut(s) 836
BglII AGATCT 1 cut(s) 776
BisI GCNGC 3 cut(s) 398, 616, 1062
BlsI GCNGC 3 cut(s) 399, 617, 1063
BmcAI AGTACT 1 cut(s) 578
Bme1390I CCNGG 1 cut(s) 350
Bme18I GGWCC 3 cut(s) 12, 75, 930
BmeRI GACNNNNNGTC 1 cut(s) 18
BmgT120I GGNCC 4 cut(s) 12, 75, 459, 930
BmiI GGNNCC 3 cut(s) 13, 564, 931
BmrFI CCNGG 1 cut(s) 350
BmsI GCATC 2 cut(s) 1049, 1148
BpiI GAAGAC 1 cut(s) 1176
BpmI CTGGAG 1 cut(s) 272
BpuEI CTTGAG 3 cut(s) 434, 464, 642
Bsa29I ATCGAT 1 cut(s) 336
BsaBI GATNNNNATC 2 cut(s) 117, 149
BsaJI CCNNGG 1 cut(s) 348
BsaWI WCCGGW 1 cut(s) 1078
BsaXI ACNNNNNCTCC 2 cut(s) 409, 439
Bsc4I CCNNNNNNNGG 1 cut(s) 84
Bse118I RCCGGY 1 cut(s) 329
Bse1I ACTGG 4 cut(s) 289, 489, 564, 1101
Bse21I CCTNAGG 1 cut(s) 90
Bse8I GATNNNNATC 2 cut(s) 117, 149
BseBI CCWGG 1 cut(s) 350
BseCI ATCGAT 1 cut(s) 336
BseDI CCNNGG 1 cut(s) 348
BseGI GGATG 1 cut(s) 1198
BseJI GATNNNNATC 2 cut(s) 117, 149
BseLI CCNNNNNNNGG 1 cut(s) 84
BseMII CTCAG 1 cut(s) 787
BseNI ACTGG 4 cut(s) 289, 489, 564, 1101
BseRI GAGGAG 2 cut(s) 83, 776
BseSI GKGCMC 1 cut(s) 1096
BseXI GCAGC 3 cut(s) 409, 627, 1073
Bsh1236I CGCG 1 cut(s) 601
BshFI GGCC 3 cut(s) 88, 460, 974
BshVI ATCGAT 1 cut(s) 336
BsiHKAI GWGCWC 1 cut(s) 774
BsiSI CCGG 2 cut(s) 330, 1079
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 1 cut(s) 84
BsmAI GTCTC 2 cut(s) 597, 1215
BsmBI CGTCTC 1 cut(s) 597
BsmFI GGGAC 1 cut(s) 25
BsnI GGCC 3 cut(s) 88, 460, 974
Bsp1286I GDGCHC 2 cut(s) 774, 1096
Bsp143I GATC 9 cut(s) 112, 150, 340, 388, 562, 675, 682, 776, 961
Bsp68I TCGCGA 1 cut(s) 601
BspACI CCGC 2 cut(s) 277, 541
BspANI GGCC 3 cut(s) 88, 460, 974
BspCNI CTCAG 1 cut(s) 786
BspDI ATCGAT 1 cut(s) 336
BspFNI CGCG 1 cut(s) 601
BspHI TCATGA 1 cut(s) 1165
BspLI GGNNCC 3 cut(s) 13, 564, 931
BspMAI CTGCAG 1 cut(s) 399
BspPI GGATC 5 cut(s) 383, 557, 570, 670, 956
BspTI CTTAAG 1 cut(s) 836
BsrFI RCCGGY 1 cut(s) 329
BsrI ACTGG 4 cut(s) 289, 489, 564, 1101
BssAI RCCGGY 1 cut(s) 329
BssECI CCNNGG 1 cut(s) 348
BssMI GATC 9 cut(s) 112, 150, 340, 388, 562, 675, 682, 776, 961
Bst2UI CCWGG 1 cut(s) 350
Bst4CI ACNGT 2 cut(s) 421, 987
Bst6I CTCTTC 7 cut(s) 96, 753, 927, 972, 1095, 1229, 1242
BstAFI CTTAAG 1 cut(s) 836
BstAPI GCANNNNNTGC 1 cut(s) 1067
BstC8I GCNNGC 2 cut(s) 654, 770
BstDEI CTNAG 3 cut(s) 90, 773, 1269
BstF5I GGATG 1 cut(s) 1198
BstFNI CGCG 1 cut(s) 601
BstKTI GATC 9 cut(s) 115, 153, 343, 391, 565, 678, 685, 779, 964
BstMAI GTCTC 2 cut(s) 597, 1215
BstMBI GATC 9 cut(s) 112, 150, 340, 388, 562, 675, 682, 776, 961
BstMWI GCNNNNNNNGC 2 cut(s) 197, 1067
BstNI CCWGG 1 cut(s) 350
BstNSI RCATGY 2 cut(s) 499, 1055
BstSCI CCNGG 1 cut(s) 348
BstSFI CTRYAG 2 cut(s) 395, 983
BstSLI GKGCMC 1 cut(s) 1096
BstUI CGCG 1 cut(s) 601
BstV1I GCAGC 3 cut(s) 409, 627, 1073
BstV2I GAAGAC 1 cut(s) 1176
BstX2I RGATCY 2 cut(s) 562, 776
BstYI RGATCY 2 cut(s) 562, 776
Bsu15I ATCGAT 1 cut(s) 336
Bsu36I CCTNAGG 1 cut(s) 90
BsuRI GGCC 3 cut(s) 88, 460, 974
BsuTUI ATCGAT 1 cut(s) 336
BtsCI GGATG 1 cut(s) 1198
BtsIMutI CAGTG 2 cut(s) 496, 1094
BtuMI TCGCGA 1 cut(s) 601
Cac8I GCNNGC 2 cut(s) 654, 770
CaiI CAGNNNCTG 1 cut(s) 559
CciI TCATGA 1 cut(s) 1165
Cfr10I RCCGGY 1 cut(s) 329
Cfr13I GGNCC 4 cut(s) 12, 75, 459, 930
ClaI ATCGAT 1 cut(s) 336
CseI GACGC 1 cut(s) 1046
Csp6I GTAC 3 cut(s) 296, 514, 577
CviAII CATG 6 cut(s) 496, 699, 733, 1052, 1067, 1166
CviQI GTAC 3 cut(s) 296, 514, 577
DdeI CTNAG 3 cut(s) 90, 773, 1269
DpnI GATC 9 cut(s) 114, 152, 342, 390, 564, 677, 684, 778, 963
DpnII GATC 9 cut(s) 112, 150, 340, 388, 562, 675, 682, 776, 961
DraI TTTAAA 1 cut(s) 217
DrdI GACNNNNNNGTC 1 cut(s) 1043
DriI GACNNNNNGTC 1 cut(s) 18
DseDI GACNNNNNNGTC 1 cut(s) 1043
Eam1104I CTCTTC 7 cut(s) 96, 753, 927, 972, 1095, 1229, 1242
Eam1105I GACNNNNNGTC 1 cut(s) 18
EarI CTCTTC 7 cut(s) 96, 753, 927, 972, 1095, 1229, 1242
Ecl136II GAGCTC 1 cut(s) 772
Eco147I AGGCCT 1 cut(s) 88
Eco24I GRGCYC 1 cut(s) 774
Eco47I GGWCC 3 cut(s) 12, 75, 930
Eco53kI GAGCTC 1 cut(s) 772
Eco57I CTGAAG 1 cut(s) 953
Eco81I CCTNAGG 1 cut(s) 90
EcoICRI GAGCTC 1 cut(s) 772
EcoO109I RGGNCCY 1 cut(s) 459
EcoRI GAATTC 2 cut(s) 53, 377
EcoRII CCWGG 1 cut(s) 348
EcoT38I GRGCYC 1 cut(s) 774
Esp3I CGTCTC 1 cut(s) 597
FaeI CATG 6 cut(s) 499, 702, 736, 1055, 1070, 1169
FaqI GGGAC 1 cut(s) 25
FatI CATG 6 cut(s) 495, 698, 732, 1051, 1066, 1165
FauI CCCGC 1 cut(s) 534
FbaI TGATCA 2 cut(s) 112, 682
Fnu4HI GCNGC 3 cut(s) 398, 616, 1062
FokI GGATG 1 cut(s) 1205
FriOI GRGCYC 1 cut(s) 774
Fsp4HI GCNGC 3 cut(s) 398, 616, 1062
FspBI CTAG 2 cut(s) 588, 692
GluI GCNGC 3 cut(s) 398, 616, 1062
GsuI CTGGAG 1 cut(s) 272
HaeIII GGCC 3 cut(s) 88, 460, 974
HapII CCGG 2 cut(s) 330, 1079
HgaI GACGC 1 cut(s) 1046
Hin1II CATG 6 cut(s) 499, 702, 736, 1055, 1070, 1169
HinfI GANTC 5 cut(s) 4, 324, 550, 662, 1082
HpaII CCGG 2 cut(s) 330, 1079
HphI GGTGA 3 cut(s) 59, 242, 373
Hpy166II GTNNAC 1 cut(s) 514
Hpy188I TCNGA 4 cut(s) 144, 345, 776, 1125
Hpy188III TCNNGA 4 cut(s) 263, 600, 659, 1166
Hpy8I GTNNAC 1 cut(s) 514
HpyAV CCTTC 1 cut(s) 797
HpyCH4III ACNGT 2 cut(s) 421, 987
HpyCH4IV ACGT 1 cut(s) 832
HpyCH4V TGCA 5 cut(s) 397, 615, 736, 818, 1061
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 1067
HpyF3I CTNAG 3 cut(s) 90, 773, 1269
HpySE526I ACGT 1 cut(s) 832
Hsp92II CATG 6 cut(s) 499, 702, 736, 1055, 1070, 1169
Ksp22I TGATCA 2 cut(s) 112, 682
Kzo9I GATC 9 cut(s) 112, 150, 340, 388, 562, 675, 682, 776, 961
LmnI GCTCC 2 cut(s) 706, 1013
Lsp1109I GCAGC 3 cut(s) 409, 627, 1073
LweI GCATC 2 cut(s) 1049, 1148
MaeI CTAG 2 cut(s) 588, 692
MaeII ACGT 1 cut(s) 832
MaeIII GTNAC 5 cut(s) 202, 415, 491, 878, 1045
MalI GATC 9 cut(s) 114, 152, 342, 390, 564, 677, 684, 778, 963
MboI GATC 9 cut(s) 112, 150, 340, 388, 562, 675, 682, 776, 961
MflI RGATCY 2 cut(s) 562, 776
MhlI GDGCHC 2 cut(s) 774, 1096
MluCI AATT 6 cut(s) 53, 234, 377, 520, 951, 1200
MlyI GAGTC 3 cut(s) 13, 333, 671
MmeI TCCRAC 1 cut(s) 1109
MroXI GAANNNNTTC 3 cut(s) 549, 921, 1109
MseI TTAA 3 cut(s) 108, 216, 837
MslI CAYNNNNRTG 1 cut(s) 1052
MspCI CTTAAG 1 cut(s) 836
MspI CCGG 2 cut(s) 330, 1079
MspR9I CCNGG 1 cut(s) 350
MvaI CCWGG 1 cut(s) 350
MvnI CGCG 1 cut(s) 601
MwoI GCNNNNNNNGC 2 cut(s) 197, 1067
NdeII GATC 9 cut(s) 112, 150, 340, 388, 562, 675, 682, 776, 961
NlaIII CATG 6 cut(s) 499, 702, 736, 1055, 1070, 1169
NlaIV GGNNCC 3 cut(s) 13, 564, 931
NmuCI GTSAC 5 cut(s) 202, 415, 491, 878, 1045
NruI TCGCGA 1 cut(s) 601
NspI RCATGY 2 cut(s) 499, 1055
OliI CACNNNNGTG 1 cut(s) 1052
PagI TCATGA 1 cut(s) 1165
PceI AGGCCT 1 cut(s) 88
PciI ACATGT 2 cut(s) 495, 1051
PcsI WCGNNNNNNNCGW 2 cut(s) 261, 333
PdmI GAANNNNTTC 3 cut(s) 549, 921, 1109
PfeI GAWTC 2 cut(s) 550, 1082
PkrI GCNGC 3 cut(s) 399, 617, 1063
PleI GAGTC 3 cut(s) 12, 332, 670
PpsI GAGTC 3 cut(s) 12, 332, 670
PscI ACATGT 2 cut(s) 495, 1051
PshBI ATTAAT 1 cut(s) 108
Psp124BI GAGCTC 1 cut(s) 774
Psp6I CCWGG 1 cut(s) 348
PspGI CCWGG 1 cut(s) 348
PspN4I GGNNCC 3 cut(s) 13, 564, 931
PspPI GGNCC 4 cut(s) 12, 75, 459, 930
PstI CTGCAG 1 cut(s) 399
PstNI CAGNNNCTG 1 cut(s) 559
PsuI RGATCY 2 cut(s) 562, 776
RruI TCGCGA 1 cut(s) 601
RsaI GTAC 3 cut(s) 297, 515, 578
RsaNI GTAC 3 cut(s) 296, 514, 577
RseI CAYNNNNRTG 1 cut(s) 1052
SacI GAGCTC 1 cut(s) 774
SaqAI TTAA 3 cut(s) 108, 216, 837
SatI GCNGC 3 cut(s) 398, 616, 1062
Sau3AI GATC 9 cut(s) 112, 150, 340, 388, 562, 675, 682, 776, 961
Sau96I GGNCC 4 cut(s) 12, 75, 459, 930
ScaI AGTACT 1 cut(s) 578
SchI GAGTC 3 cut(s) 13, 333, 671
ScrFI CCNGG 1 cut(s) 350
SduI GDGCHC 2 cut(s) 774, 1096
SfaNI GCATC 2 cut(s) 1049, 1148
SfcI CTRYAG 2 cut(s) 395, 983
SinI GGWCC 3 cut(s) 12, 75, 930
SmiMI CAYNNNNRTG 1 cut(s) 1052
SmlI CTYRAG 4 cut(s) 449, 479, 657, 836
SmoI CTYRAG 4 cut(s) 449, 479, 657, 836
Sse9I AATT 6 cut(s) 53, 234, 377, 520, 951, 1200
SseBI AGGCCT 1 cut(s) 88
SsiI CCGC 2 cut(s) 277, 541
SspI AATATT 1 cut(s) 30
SspMI CTAG 2 cut(s) 588, 692
SstI GAGCTC 1 cut(s) 774
StuI AGGCCT 1 cut(s) 88
StyD4I CCNGG 1 cut(s) 348
TaaI ACNGT 2 cut(s) 421, 987
TaiI ACGT 1 cut(s) 835
TaqI TCGA 4 cut(s) 336, 642, 891, 960
TaqII GACCGA 2 cut(s) 29, 1033
TasI AATT 6 cut(s) 53, 234, 377, 520, 951, 1200
TatI WGTACW 2 cut(s) 513, 576
TfiI GAWTC 2 cut(s) 550, 1082
Tru1I TTAA 3 cut(s) 108, 216, 837
Tru9I TTAA 3 cut(s) 108, 216, 837
TscAI CASTG 2 cut(s) 496, 1101
TseFI GTSAC 5 cut(s) 202, 415, 491, 878, 1045
TseI GCWGC 3 cut(s) 397, 615, 1061
Tsp45I GTSAC 5 cut(s) 202, 415, 491, 878, 1045
TspDTI ATGAA 5 cut(s) 66, 449, 521, 816, 1182
TspGWI ACGGA 1 cut(s) 922
TspRI CASTG 2 cut(s) 496, 1101
Vha464I CTTAAG 1 cut(s) 836
VpaK11BI GGWCC 3 cut(s) 12, 75, 930
VspI ATTAAT 1 cut(s) 108
XapI RAATTY 3 cut(s) 53, 377, 520
XceI RCATGY 2 cut(s) 499, 1055
XcmI CCANNNNNNNNNTGG 1 cut(s) 41
XmnI GAANNNNTTC 3 cut(s) 549, 921, 1109
XspI CTAG 2 cut(s) 588, 692
ZrmI AGTACT 1 cut(s) 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.