Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0006690

Physical Location & Seq

Genomic Coordinates Reverse (-)

12651266 .. 12658134

Gene Structure 6869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g21050.t9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAGTTGCATTCAGATTCAGTCCAACTTTACTACACTGGTCATAATTGAGGGTTGGGTTTATAAATTCAAAGCAAAAGCGTTCTCTGTGGACTTTCTCCAGTGGAAGCAGTACTCTTTGATATCGATGGAACTGTATGTGATTCAGATCCAATTCACTATGCTGCCTTCCGTGAAGTGCTTCAAGAGGATACTTTTCCCTGATGATTTTGAACGAGGCATAAAGTTAACAGATGACAAGGAAGCCATGTTTCGTAGATTGGTTGGAGACAAATTGAAGCCTGTGAGTGGTCTCGATAAAGTGAGGAAATGGGTTGAAGATCGTGGATTGAAACGAGCTGCAGTTACTAATGCTCCCAGACCAAATGCTGAACTAATGATCTCCATCCTTGGCCTCTCAGATTTTTTCCAAGCTGTTATTCTTGGGAGTGAATGTGAGCATGCCAAACCTCACCCAGAGCCCTACTTGAAGGGCCTTGAAGCAATCAAGGCATCAAAAGAGCACACTTTTATCTTTGAGGATTCTGTTTCGGGGATAAAAGCTGGAGTGGCAGCTGGTATGCCGGTTATTGCTTTAACCACCGGAAATCCAGAACACATATTAATGGAAGCAAAACCCTCCCTTATTATCAAGAACTATGATGATCCAAAATTGTGGGCGGCACTAGAAGAGCTTGATAAGAAGAGTGGTACTAGGGGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003850 GO:0004346 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0042578 GO:0044237 GO:0050308 GO:0050309

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

235

Amino Acids

26.32

Weight (kDa)

8.63

Isoelectric Point (pI)

30.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	6 - 104	8.6e-17	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	8 - 109	4.9e-20	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38740
fragaria_vesca	FvH4_5g21050 FvH4_5g21050 FvH4_5g21050 FvH4_5g21050 FvH4_5g21050
malus_domestica	MD06G1041200.v1.1 MD12G1227700.v1.1 MD15G1033000.v1.1
prunus_persica	Prupe.5G047500_v2.0.a1 Prupe.5G047600_v2.0.a1 Prupe.5G047600_v2.0.a1
pyrus_communis	pycom06g03420
rosa_chinensis	RchiOBHm_Chr7g0208111
rosa_laevigata	RLG00000003254
rosa_multiflora	Rmu_sc0000706.1_g000042
rosa_roxburghii	Rroxscaffold_3G00250810
rosa_rugosa	Rorug07G0101400 Rorug07G0101500 Rorug07G0101600 Rorug07G0101700
rosa_samantha	Rh7AG234500 Rh7BG231100 Rh7CG250700 Rh7DG241500
rosa_wichuraiana	Rw7G020080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	63
AciI	CCGC	1 cut(s)	659
AclWI	GGATC	2 cut(s)	142, 638
AcsI	RAATTY	1 cut(s)	65
AfaI	GTAC	2 cut(s)	113, 691
AfiI	CCNNNNNNNGG	1 cut(s)	287
AgsI	TTSAA	8 cut(s)	70, 184, 212, 277, 317, 331, 469, 479
AjuI	GAANNNNNNNTTGG	2 cut(s)	402, 434
AluBI	AGCT	5 cut(s)	338, 413, 542, 554, 673
AluI	AGCT	5 cut(s)	338, 413, 542, 554, 673
Alw21I	GWGCWC	1 cut(s)	504
Alw26I	GTCTC	2 cut(s)	261, 296
AlwI	GGATC	2 cut(s)	142, 638
AoxI	GGCC	2 cut(s)	391, 472
ApeKI	GCWGC	3 cut(s)	163, 338, 551
ApoI	RAATTY	1 cut(s)	65
AseI	ATTAAT	1 cut(s)	602
Asp700I	GAANNNNTTC	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	472
AsuHPI	GGTGA	1 cut(s)	443
BanII	GRGCYC	1 cut(s)	462
Bbv12I	GWGCWC	1 cut(s)	504
BbvI	GCAGC	3 cut(s)	150, 325, 563
BccI	CCATC	2 cut(s)	121, 392
BciVI	GTATCC	1 cut(s)	183
BcoDI	GTCTC	2 cut(s)	261, 296
BfaI	CTAG	2 cut(s)	665, 693
BfmI	CTRYAG	1 cut(s)	339
BfuI	GTATCC	1 cut(s)	183
BisI	GCNGC	4 cut(s)	164, 339, 552, 660
BlsI	GCNGC	4 cut(s)	165, 340, 553, 661
BmcAI	AGTACT	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	472
BmsI	GCATC	1 cut(s)	500
BpmI	CTGGAG	2 cut(s)	83, 564
Bsa29I	ATCGAT	1 cut(s)	125
BsaBI	GATNNNNATC	2 cut(s)	146, 383
BsaI	GGTCTC	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	388
BsaWI	WCCGGW	1 cut(s)	581
BsaXI	ACNNNNNCTCC	4 cut(s)	337, 367, 418, 448
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
Bse118I	RCCGGY	1 cut(s)	562
Bse1I	ACTGG	2 cut(s)	42, 100
Bse8I	GATNNNNATC	2 cut(s)	146, 383
BseCI	ATCGAT	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	388
BseGI	GGATG	1 cut(s)	384
BseJI	GATNNNNATC	2 cut(s)	146, 383
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	2 cut(s)	42, 100
BseXI	GCAGC	3 cut(s)	150, 325, 563
BshFI	GGCC	2 cut(s)	393, 474
BshVI	ATCGAT	1 cut(s)	125
BsiHKAI	GWGCWC	1 cut(s)	504
BsiSI	CCGG	2 cut(s)	563, 582
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmAI	GTCTC	2 cut(s)	261, 296
BsmI	GAATGC	1 cut(s)	9
BsnI	GGCC	2 cut(s)	393, 474
Bso31I	GGTCTC	1 cut(s)	296
Bsp1286I	GDGCHC	2 cut(s)	462, 504
Bsp143I	GATC	4 cut(s)	147, 319, 378, 643
BspACI	CCGC	1 cut(s)	659
BspANI	GGCC	2 cut(s)	393, 474
BspCNI	CTCAG	1 cut(s)	410
BspDI	ATCGAT	1 cut(s)	125
BspMAI	CTGCAG	1 cut(s)	343
BspPI	GGATC	2 cut(s)	142, 638
BspQI	GCTCTTC	1 cut(s)	663
BspTNI	GGTCTC	1 cut(s)	296
BsrFI	RCCGGY	1 cut(s)	562
BsrI	ACTGG	2 cut(s)	42, 100
BssAI	RCCGGY	1 cut(s)	562
BssECI	CCNNGG	1 cut(s)	388
BssMI	GATC	4 cut(s)	147, 319, 378, 643
BssT1I	CCWWGG	1 cut(s)	388
Bst4CI	ACNGT	1 cut(s)	135
Bst6I	CTCTTC	2 cut(s)	663, 677
BstC8I	GCNNGC	1 cut(s)	441
BstDEI	CTNAG	1 cut(s)	397
BstF5I	GGATG	1 cut(s)	384
BstKTI	GATC	4 cut(s)	150, 322, 381, 646
BstMAI	GTCTC	2 cut(s)	261, 296
BstMBI	GATC	4 cut(s)	147, 319, 378, 643
BstMWI	GCNNNNNNNGC	2 cut(s)	488, 548
BstNSI	RCATGY	1 cut(s)	443
BstSFI	CTRYAG	1 cut(s)	339
BstV1I	GCAGC	3 cut(s)	150, 325, 563
BstX2I	RGATCY	1 cut(s)	147
BstXI	CCANNNNNNTGG	1 cut(s)	654
BstYI	RGATCY	1 cut(s)	147
Bsu15I	ATCGAT	1 cut(s)	125
BsuI	GTATCC	1 cut(s)	183
BsuRI	GGCC	2 cut(s)	393, 474
BsuTUI	ATCGAT	1 cut(s)	125
BtsCI	GGATG	1 cut(s)	384
BtsIMutI	CAGTG	2 cut(s)	35, 107
Cac8I	GCNNGC	1 cut(s)	441
Cfr10I	RCCGGY	1 cut(s)	562
Cfr13I	GGNCC	1 cut(s)	472
ClaI	ATCGAT	1 cut(s)	125
Csp6I	GTAC	2 cut(s)	112, 690
CviAII	CATG	2 cut(s)	247, 440
CviQI	GTAC	2 cut(s)	112, 690
DdeI	CTNAG	1 cut(s)	397
DpnI	GATC	4 cut(s)	149, 321, 380, 645
DpnII	GATC	4 cut(s)	147, 319, 378, 643
Eam1104I	CTCTTC	2 cut(s)	663, 677
EarI	CTCTTC	2 cut(s)	663, 677
Eco130I	CCWWGG	1 cut(s)	388
Eco24I	GRGCYC	1 cut(s)	462
Eco31I	GGTCTC	1 cut(s)	296
Eco32I	GATATC	1 cut(s)	123
EcoO109I	RGGNCCY	1 cut(s)	472
EcoRV	GATATC	1 cut(s)	123
EcoT14I	CCWWGG	1 cut(s)	388
EcoT38I	GRGCYC	1 cut(s)	462
ErhI	CCWWGG	1 cut(s)	388
FaeI	CATG	2 cut(s)	250, 443
FatI	CATG	2 cut(s)	246, 439
Fnu4HI	GCNGC	4 cut(s)	164, 339, 552, 660
FokI	GGATG	1 cut(s)	371
FriOI	GRGCYC	1 cut(s)	462
Fsp4HI	GCNGC	4 cut(s)	164, 339, 552, 660
FspBI	CTAG	2 cut(s)	665, 693
GluI	GCNGC	4 cut(s)	164, 339, 552, 660
GsuI	CTGGAG	2 cut(s)	83, 564
HaeIII	GGCC	2 cut(s)	393, 474
HapII	CCGG	2 cut(s)	563, 582
Hin1II	CATG	2 cut(s)	250, 443
HincII	GTYRAC	1 cut(s)	228
HindII	GTYRAC	1 cut(s)	228
HinfI	GANTC	3 cut(s)	16, 142, 521
HpaI	GTTAAC	1 cut(s)	228
HpaII	CCGG	2 cut(s)	563, 582
HphI	GGTGA	1 cut(s)	443
Hpy166II	GTNNAC	2 cut(s)	91, 228
Hpy188I	TCNGA	3 cut(s)	15, 147, 400
Hpy188III	TCNNGA	4 cut(s)	184, 293, 590, 631
Hpy8I	GTNNAC	2 cut(s)	91, 228
HpyAV	CCTTC	2 cut(s)	177, 463
HpyCH4III	ACNGT	1 cut(s)	135
HpyCH4V	TGCA	2 cut(s)	9, 341
HpyF10VI	GCNNNNNNNGC	2 cut(s)	488, 548
HpyF3I	CTNAG	1 cut(s)	397
Hsp92II	CATG	2 cut(s)	250, 443
KspAI	GTTAAC	1 cut(s)	228
Kzo9I	GATC	4 cut(s)	147, 319, 378, 643
LguI	GCTCTTC	1 cut(s)	663
LmnI	GCTCC	1 cut(s)	358
Lsp1109I	GCAGC	3 cut(s)	150, 325, 563
LweI	GCATC	1 cut(s)	500
MaeI	CTAG	2 cut(s)	665, 693
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	4 cut(s)	149, 321, 380, 645
MboI	GATC	4 cut(s)	147, 319, 378, 643
MboII	GAAGA	3 cut(s)	329, 680, 694
MflI	RGATCY	1 cut(s)	147
MhlI	GDGCHC	2 cut(s)	462, 504
MluCI	AATT	5 cut(s)	45, 65, 152, 272, 650
MmeI	TCCRAC	2 cut(s)	48, 244
MnlI	CCTC	8 cut(s)	43, 180, 209, 297, 404, 459, 511, 628
MroXI	GAANNNNTTC	1 cut(s)	179
MseI	TTAA	4 cut(s)	227, 575, 602, 703
MslI	CAYNNNNRTG	1 cut(s)	602
MspA1I	CMGCKG	1 cut(s)	554
MspI	CCGG	2 cut(s)	563, 582
Mva1269I	GAATGC	1 cut(s)	9
MwoI	GCNNNNNNNGC	2 cut(s)	488, 548
NdeII	GATC	4 cut(s)	147, 319, 378, 643
NlaIII	CATG	2 cut(s)	250, 443
NspI	RCATGY	1 cut(s)	443
PaeI	GCATGC	1 cut(s)	443
PciSI	GCTCTTC	1 cut(s)	663
PctI	GAATGC	1 cut(s)	9
PdmI	GAANNNNTTC	1 cut(s)	179
PfeI	GAWTC	3 cut(s)	16, 142, 521
PkrI	GCNGC	4 cut(s)	165, 340, 553, 661
PshBI	ATTAAT	1 cut(s)	602
PsiI	TTATAA	1 cut(s)	63
PspPI	GGNCC	1 cut(s)	472
PstI	CTGCAG	1 cut(s)	343
PsuI	RGATCY	1 cut(s)	147
PvuII	CAGCTG	1 cut(s)	554
RsaI	GTAC	2 cut(s)	113, 691
RsaNI	GTAC	2 cut(s)	112, 690
RseI	CAYNNNNRTG	1 cut(s)	602
SapI	GCTCTTC	1 cut(s)	663
SaqAI	TTAA	4 cut(s)	227, 575, 602, 703
SatI	GCNGC	4 cut(s)	164, 339, 552, 660
Sau3AI	GATC	4 cut(s)	147, 319, 378, 643
Sau96I	GGNCC	1 cut(s)	472
ScaI	AGTACT	1 cut(s)	113
SduI	GDGCHC	2 cut(s)	462, 504
SetI	ASST	6 cut(s)	340, 415, 451, 544, 556, 675
SfaNI	GCATC	1 cut(s)	500
SfcI	CTRYAG	1 cut(s)	339
SmiMI	CAYNNNNRTG	1 cut(s)	602
SphI	GCATGC	1 cut(s)	443
Sse9I	AATT	5 cut(s)	45, 65, 152, 272, 650
SsiI	CCGC	1 cut(s)	659
SspMI	CTAG	2 cut(s)	665, 693
StyI	CCWWGG	1 cut(s)	388
TaaI	ACNGT	1 cut(s)	135
TaqI	TCGA	2 cut(s)	125, 294
TasI	AATT	5 cut(s)	45, 65, 152, 272, 650
TatI	WGTACW	1 cut(s)	111
TauI	GCSGC	1 cut(s)	662
TfiI	GAWTC	3 cut(s)	16, 142, 521
Tru1I	TTAA	4 cut(s)	227, 575, 602, 703
Tru9I	TTAA	4 cut(s)	227, 575, 602, 703
TscAI	CASTG	2 cut(s)	42, 107
TseI	GCWGC	3 cut(s)	163, 338, 551
TspGWI	ACGGA	1 cut(s)	160
TspRI	CASTG	2 cut(s)	42, 107
VspI	ATTAAT	1 cut(s)	602
XapI	RAATTY	1 cut(s)	65
XceI	RCATGY	1 cut(s)	443
XmnI	GAANNNNTTC	1 cut(s)	179
XspI	CTAG	2 cut(s)	665, 693
ZrmI	AGTACT	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.