Rorug07G0101600

Haloacid dehalogenase-like hydrolase domain-containing protein Sgpp

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0006690
Physical Location & Seq
Forward (+)
8013243 .. 8014379
1137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0101600.1

Sequence Viewer

Length: 1137 bp
ATGAGTATTGGTTTCATACCCAAGGGGGTCTTCAATACCCTAAGTGATGAATTCATTGACCGTTTACGTAAGGTCAACACTAACTATATGCTACGCCTTAGAAAACTCCACCTAGTACTTGATCTAAATCACACCCTGCTGGCTCTCACAAAACTCAGTGATCTGACTCCAGAAGAAGAAGAATATTTAAACAATACCCAAACACTGCAAGATGTTTTCAAAGTGCAAGCTCCTGATGACAGTATGAGCCCTATGATTATCAAGTTGAGACCCTTTGTTAGAACCTTTCTCAAGAAAGCAAGTGACAAGTTCGAAATGTATGTTTACGAAGATGCTCCTCAATCTCTTGTGAGGAAGATGGTTGAGCTACTGGATCCTAAGAATGAGTACTTTGGTCAAAGAGTGATTTCGCGCGAGGATTATTTTTGGAGCAACCACATGGGAAAGAAGCATCTTGATCTTGTGCTTGGCCAGGAGTCTGCTGTTTTGATCCTTGGGGATAACCTCGAGGCATGGATGGAGCAAAATCAAAAGAACATAGCAGTACCAGTGCAAAAGTATCCTTTCTTTAAACAAAGTTGTGGCCAGAAGAGCAGGCGCAAGTCTCTTTGTGAGTTGAAAAATGATGAAGGGGGGATTTATCTTGCAAATGTTCTTCAACGTCTTAGGCGAATACACAGCATGTTCTTTAATGATCAAGTGATGTGTGATAAGGTTTTCGACAGAGATGTGAGGATGGTGTTAAAAAGTGTCGAATGGATTTCCAAGACCTATAAGAGGAAGAAGTTAAAAAGTGTCAAAATGATTTCTAAGACCGATAAGCTTCTGTTGAGGAAGAAGGCATTATCAAACTGTATGTGGAAAAAAAGTGATCACCGGAAGAAGAAGAAGACAGAGAAGATGGAAGAGCAGTCACCGGAAGCTTCTTATGTTGAAAAACTAGAGGATCCAGAATCATCGGTGGTGGATGCAGTAGCTGATCATGTTGGAACGTCACCGGCTCCTTGGGTACACCCGAGCTGGATTGAAAAATCAATCCATTTGTGGAAAAAGAGTCATGCAGACAAGGGCCCTGTTATCACCGAGGAGGGCGAATTTAGTTGCAGGCTTGCAGCTCATATTGGAACGCTGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003850 GO:0004346 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0042578 GO:0044237 GO:0050308 GO:0050309
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HAD_2

Protein Analysis

378

Amino Acids

44.04

Weight (kDa)

9.18

Isoelectric Point (pI)

50.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 37 - 187 4e-20 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 506
AccII CGCG 2 cut(s) 412, 414
AclWI GGATC 5 cut(s) 368, 381, 484, 941, 954
AcoI YGGCCR 2 cut(s) 469, 583
AcsI RAATTY 2 cut(s) 50, 1094
AfaI GTAC 4 cut(s) 117, 389, 546, 1011
AfiI CCNNNNNNNGG 1 cut(s) 777
AgsI TTSAA 6 cut(s) 34, 220, 619, 659, 935, 1028
AjnI CCWGG 1 cut(s) 471
AjuI GAANNNNNNNTTGG 2 cut(s) 14, 46
AluBI AGCT 7 cut(s) 230, 367, 823, 923, 977, 1020, 1115
AluI AGCT 7 cut(s) 230, 367, 823, 923, 977, 1020, 1115
Alw26I GTCTC 2 cut(s) 262, 609
AlwI GGATC 5 cut(s) 368, 381, 484, 941, 954
AlwNI CAGNNNCTG 1 cut(s) 977
Ama87I CYCGRG 2 cut(s) 506, 1015
AoxI GGCC 3 cut(s) 469, 583, 1069
ApaI GGGCCC 1 cut(s) 1073
ApeKI GCWGC 1 cut(s) 1112
ApoI RAATTY 2 cut(s) 50, 1094
AspLEI GCGC 2 cut(s) 414, 600
AspS9I GGNCC 2 cut(s) 1069, 1070
AsuHPI GGTGA 4 cut(s) 866, 906, 987, 1072
AsuII TTCGAA 1 cut(s) 312
AvaI CYCGRG 2 cut(s) 506, 1015
BaeGI GKGCMC 1 cut(s) 1073
BalI TGGCCA 2 cut(s) 471, 585
BamHI GGATCC 2 cut(s) 373, 946
BanII GRGCYC 2 cut(s) 251, 1073
BbsI GAAGAC 2 cut(s) 22, 896
BbvI GCAGC 1 cut(s) 1124
BccI CCATC 4 cut(s) 352, 511, 730, 895
BciT130I CCWGG 1 cut(s) 473
BciVI GTATCC 1 cut(s) 570
BclI TGATCA 3 cut(s) 694, 871, 979
BcoDI GTCTC 2 cut(s) 262, 609
BfaI CTAG 2 cut(s) 113, 941
BfuI GTATCC 1 cut(s) 570
BisI GCNGC 1 cut(s) 1113
BlsI GCNGC 1 cut(s) 1114
BmcAI AGTACT 2 cut(s) 117, 389
Bme1390I CCNGG 1 cut(s) 473
BmeT110I CYCGRG 2 cut(s) 506, 1015
BmgT120I GGNCC 2 cut(s) 1069, 1070
BmiI GGNNCC 4 cut(s) 375, 948, 1002, 1071
BmrFI CCNGG 1 cut(s) 473
BmsI GCATC 3 cut(s) 322, 460, 958
BpiI GAAGAC 2 cut(s) 22, 896
BpmI CTGGAG 1 cut(s) 153
Bpu14I TTCGAA 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 275
BsaAI YACGTR 1 cut(s) 68
BsaBI GATNNNNATC 1 cut(s) 126
BsaI GGTCTC 1 cut(s) 262
BsaJI CCNNGG 4 cut(s) 21, 493, 1004, 1083
BsaWI WCCGGW 2 cut(s) 876, 916
Bsc4I CCNNNNNNNGG 1 cut(s) 777
Bse118I RCCGGY 1 cut(s) 997
Bse1I ACTGG 2 cut(s) 375, 548
Bse8I GATNNNNATC 1 cut(s) 126
BseBI CCWGG 1 cut(s) 473
BseDI CCNNGG 4 cut(s) 21, 493, 1004, 1083
BseGI GGATG 3 cut(s) 522, 741, 973
BseJI GATNNNNATC 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 777
BseMII CTCAG 1 cut(s) 169
BseNI ACTGG 2 cut(s) 375, 548
BseRI GAGGAG 2 cut(s) 327, 1100
BseSI GKGCMC 1 cut(s) 1073
BseXI GCAGC 1 cut(s) 1124
Bsh1236I CGCG 2 cut(s) 412, 414
BshFI GGCC 3 cut(s) 471, 585, 1071
BsiHKCI CYCGRG 2 cut(s) 506, 1015
BsiSI CCGG 3 cut(s) 877, 917, 998
BslI CCNNNNNNNGG 1 cut(s) 777
BsmAI GTCTC 2 cut(s) 262, 609
BsnI GGCC 3 cut(s) 471, 585, 1071
Bso31I GGTCTC 1 cut(s) 262
BsoBI CYCGRG 2 cut(s) 506, 1015
Bsp119I TTCGAA 1 cut(s) 312
Bsp120I GGGCCC 1 cut(s) 1069
Bsp1286I GDGCHC 2 cut(s) 251, 1073
Bsp143I GATC 9 cut(s) 121, 160, 373, 457, 489, 694, 871, 946, 979
BspANI GGCC 3 cut(s) 471, 585, 1071
BspCNI CTCAG 1 cut(s) 168
BspFNI CGCG 2 cut(s) 412, 414
BspLI GGNNCC 4 cut(s) 375, 948, 1002, 1071
BspPI GGATC 5 cut(s) 368, 381, 484, 941, 954
BspQI GCTCTTC 2 cut(s) 584, 900
BspT104I TTCGAA 1 cut(s) 312
BspTNI GGTCTC 1 cut(s) 262
BsrFI RCCGGY 1 cut(s) 997
BsrI ACTGG 2 cut(s) 375, 548
BssAI RCCGGY 1 cut(s) 997
BssECI CCNNGG 4 cut(s) 21, 493, 1004, 1083
BssMI GATC 9 cut(s) 121, 160, 373, 457, 489, 694, 871, 946, 979
BssT1I CCWWGG 3 cut(s) 21, 493, 1004
Bst2UI CCWGG 1 cut(s) 473
Bst4CI ACNGT 3 cut(s) 62, 242, 854
Bst6I CTCTTC 2 cut(s) 584, 900
BstBAI YACGTR 1 cut(s) 68
BstBI TTCGAA 1 cut(s) 312
BstC8I GCNNGC 5 cut(s) 141, 228, 596, 1106, 1110
BstDEI CTNAG 6 cut(s) 41, 98, 155, 378, 665, 810
BstENI CCTNNNNNAGG 1 cut(s) 775
BstF5I GGATG 3 cut(s) 522, 741, 973
BstFNI CGCG 2 cut(s) 412, 414
BstHHI GCGC 2 cut(s) 414, 600
BstKTI GATC 9 cut(s) 124, 163, 376, 460, 492, 697, 874, 949, 982
BstMAI GTCTC 2 cut(s) 262, 609
BstMBI GATC 9 cut(s) 121, 160, 373, 457, 489, 694, 871, 946, 979
BstMWI GCNNNNNNNGC 1 cut(s) 591
BstNI CCWGG 1 cut(s) 473
BstNSI RCATGY 1 cut(s) 685
BstSCI CCNGG 1 cut(s) 471
BstSLI GKGCMC 1 cut(s) 1073
BstSNI TACGTA 1 cut(s) 68
BstUI CGCG 2 cut(s) 412, 414
BstV1I GCAGC 1 cut(s) 1124
BstV2I GAAGAC 2 cut(s) 22, 896
BstX2I RGATCY 2 cut(s) 373, 946
BstYI RGATCY 2 cut(s) 373, 946
BsuI GTATCC 1 cut(s) 570
BsuRI GGCC 3 cut(s) 471, 585, 1071
BtsCI GGATG 3 cut(s) 522, 741, 973
BtsI GCAGTG 1 cut(s) 203
BtsIMutI CAGTG 3 cut(s) 163, 203, 555
Cac8I GCNNGC 5 cut(s) 141, 228, 596, 1106, 1110
CaiI CAGNNNCTG 1 cut(s) 977
CfoI GCGC 2 cut(s) 414, 600
Cfr10I RCCGGY 1 cut(s) 997
Cfr13I GGNCC 2 cut(s) 1069, 1070
Csp6I GTAC 4 cut(s) 116, 388, 545, 1010
CviAII CATG 5 cut(s) 439, 513, 682, 983, 1058
CviQI GTAC 4 cut(s) 116, 388, 545, 1010
DdeI CTNAG 6 cut(s) 41, 98, 155, 378, 665, 810
DpnI GATC 9 cut(s) 123, 162, 375, 459, 491, 696, 873, 948, 981
DpnII GATC 9 cut(s) 121, 160, 373, 457, 489, 694, 871, 946, 979
DraI TTTAAA 2 cut(s) 189, 571
EaeI YGGCCR 2 cut(s) 469, 583
Eam1104I CTCTTC 2 cut(s) 584, 900
EarI CTCTTC 2 cut(s) 584, 900
Eco105I TACGTA 1 cut(s) 68
Eco130I CCWWGG 3 cut(s) 21, 493, 1004
Eco24I GRGCYC 2 cut(s) 251, 1073
Eco31I GGTCTC 1 cut(s) 262
Eco88I CYCGRG 2 cut(s) 506, 1015
EcoNI CCTNNNNNAGG 1 cut(s) 775
EcoO109I RGGNCCY 2 cut(s) 1069, 1070
EcoRI GAATTC 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 471
EcoT14I CCWWGG 3 cut(s) 21, 493, 1004
EcoT38I GRGCYC 2 cut(s) 251, 1073
ErhI CCWWGG 3 cut(s) 21, 493, 1004
FaeI CATG 5 cut(s) 442, 516, 685, 986, 1061
FalI AAGNNNNNCTT 2 cut(s) 14, 46
FatI CATG 5 cut(s) 438, 512, 681, 982, 1057
FbaI TGATCA 3 cut(s) 694, 871, 979
Fnu4HI GCNGC 1 cut(s) 1113
FokI GGATG 3 cut(s) 529, 748, 980
FriOI GRGCYC 2 cut(s) 251, 1073
Fsp4HI GCNGC 1 cut(s) 1113
FspBI CTAG 2 cut(s) 113, 941
GlaI GCGC 2 cut(s) 413, 599
GluI GCNGC 1 cut(s) 1113
GsuI CTGGAG 1 cut(s) 153
HaeIII GGCC 3 cut(s) 471, 585, 1071
HapII CCGG 3 cut(s) 877, 917, 998
HhaI GCGC 2 cut(s) 414, 600
Hin1II CATG 5 cut(s) 442, 516, 685, 986, 1061
Hin6I GCGC 2 cut(s) 412, 598
HinP1I GCGC 2 cut(s) 412, 598
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HindIII AAGCTT 2 cut(s) 821, 921
HinfI GANTC 4 cut(s) 166, 476, 953, 1054
HpaII CCGG 3 cut(s) 877, 917, 998
HphI GGTGA 4 cut(s) 866, 906, 987, 1072
Hpy166II GTNNAC 4 cut(s) 65, 76, 325, 1012
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 5 cut(s) 170, 233, 292, 455, 950
Hpy8I GTNNAC 4 cut(s) 65, 76, 325, 1012
HpyAV CCTTC 2 cut(s) 623, 832
HpyCH4III ACNGT 3 cut(s) 62, 242, 854
HpyCH4IV ACGT 3 cut(s) 67, 661, 992
HpyCH4V TGCA 8 cut(s) 208, 226, 553, 647, 971, 1061, 1104, 1112
HpyF10VI GCNNNNNNNGC 1 cut(s) 591
HpyF3I CTNAG 6 cut(s) 41, 98, 155, 378, 665, 810
HpySE526I ACGT 3 cut(s) 67, 661, 992
Hsp92II CATG 5 cut(s) 442, 516, 685, 986, 1061
HspAI GCGC 2 cut(s) 412, 598
Ksp22I TGATCA 3 cut(s) 694, 871, 979
Kzo9I GATC 9 cut(s) 121, 160, 373, 457, 489, 694, 871, 946, 979
LguI GCTCTTC 2 cut(s) 584, 900
LmnI GCTCC 5 cut(s) 235, 340, 429, 520, 1006
Lsp1109I GCAGC 1 cut(s) 1124
LweI GCATC 3 cut(s) 322, 460, 958
MaeI CTAG 2 cut(s) 113, 941
MaeII ACGT 3 cut(s) 67, 661, 992
MaeIII GTNAC 3 cut(s) 302, 912, 993
MalI GATC 9 cut(s) 123, 162, 375, 459, 491, 696, 873, 948, 981
MboI GATC 9 cut(s) 121, 160, 373, 457, 489, 694, 871, 946, 979
MflI RGATCY 2 cut(s) 373, 946
MhlI GDGCHC 2 cut(s) 251, 1073
MlsI TGGCCA 2 cut(s) 471, 585
MluCI AATT 2 cut(s) 50, 1094
MluNI TGGCCA 2 cut(s) 471, 585
MlyI GAGTC 3 cut(s) 160, 485, 1063
MmeI TCCRAC 1 cut(s) 967
Mox20I TGGCCA 2 cut(s) 471, 585
MscI TGGCCA 2 cut(s) 471, 585
MseI TTAA 5 cut(s) 188, 570, 690, 743, 788
Msp20I TGGCCA 2 cut(s) 471, 585
MspI CCGG 3 cut(s) 877, 917, 998
MspR9I CCNGG 1 cut(s) 473
MvaI CCWGG 1 cut(s) 473
MvnI CGCG 2 cut(s) 412, 414
MwoI GCNNNNNNNGC 1 cut(s) 591
NdeII GATC 9 cut(s) 121, 160, 373, 457, 489, 694, 871, 946, 979
NlaIII CATG 5 cut(s) 442, 516, 685, 986, 1061
NlaIV GGNNCC 4 cut(s) 375, 948, 1002, 1071
NmuCI GTSAC 3 cut(s) 302, 912, 993
NspI RCATGY 1 cut(s) 685
NspV TTCGAA 1 cut(s) 312
PaeR7I CTCGAG 1 cut(s) 506
PciSI GCTCTTC 2 cut(s) 584, 900
PcsI WCGNNNNNNNCGW 1 cut(s) 667
PfeI GAWTC 1 cut(s) 953
PkrI GCNGC 1 cut(s) 1114
PleI GAGTC 3 cut(s) 160, 484, 1062
PpsI GAGTC 3 cut(s) 160, 484, 1062
Ppu21I YACGTR 1 cut(s) 68
Psp6I CCWGG 1 cut(s) 471
PspGI CCWGG 1 cut(s) 471
PspN4I GGNNCC 4 cut(s) 375, 948, 1002, 1071
PspOMI GGGCCC 1 cut(s) 1069
PspPI GGNCC 2 cut(s) 1069, 1070
PspXI VCTCGAGB 1 cut(s) 506
PstNI CAGNNNCTG 1 cut(s) 977
PsuI RGATCY 2 cut(s) 373, 946
RsaI GTAC 4 cut(s) 117, 389, 546, 1011
RsaNI GTAC 4 cut(s) 116, 388, 545, 1010
SapI GCTCTTC 2 cut(s) 584, 900
SaqAI TTAA 5 cut(s) 188, 570, 690, 743, 788
SatI GCNGC 1 cut(s) 1113
Sau3AI GATC 9 cut(s) 121, 160, 373, 457, 489, 694, 871, 946, 979
Sau96I GGNCC 2 cut(s) 1069, 1070
ScaI AGTACT 2 cut(s) 117, 389
SchI GAGTC 3 cut(s) 160, 485, 1063
ScrFI CCNGG 1 cut(s) 473
SduI GDGCHC 2 cut(s) 251, 1073
SfaNI GCATC 3 cut(s) 322, 460, 958
Sfr274I CTCGAG 1 cut(s) 506
SfuI TTCGAA 1 cut(s) 312
SlaI CTCGAG 1 cut(s) 506
SmlI CTYRAG 2 cut(s) 290, 506
SmoI CTYRAG 2 cut(s) 290, 506
SnaBI TACGTA 1 cut(s) 68
Sse9I AATT 2 cut(s) 50, 1094
SspI AATATT 1 cut(s) 185
SspMI CTAG 2 cut(s) 113, 941
StyD4I CCNGG 1 cut(s) 471
StyI CCWWGG 3 cut(s) 21, 493, 1004
TaaI ACNGT 3 cut(s) 62, 242, 854
TaiI ACGT 3 cut(s) 70, 664, 995
TaqI TCGA 4 cut(s) 312, 507, 720, 753
TaqII GACCGA 1 cut(s) 830
TasI AATT 2 cut(s) 50, 1094
TatI WGTACW 2 cut(s) 115, 387
TfiI GAWTC 1 cut(s) 953
Tru1I TTAA 5 cut(s) 188, 570, 690, 743, 788
Tru9I TTAA 5 cut(s) 188, 570, 690, 743, 788
TscAI CASTG 3 cut(s) 163, 210, 555
TseFI GTSAC 3 cut(s) 302, 912, 993
TseI GCWGC 1 cut(s) 1112
Tsp45I GTSAC 3 cut(s) 302, 912, 993
TspDTI ATGAA 4 cut(s) 4, 43, 63, 642
TspRI CASTG 3 cut(s) 163, 210, 555
XagI CCTNNNNNAGG 1 cut(s) 775
XapI RAATTY 2 cut(s) 50, 1094
XceI RCATGY 1 cut(s) 685
XhoI CTCGAG 1 cut(s) 506
XspI CTAG 2 cut(s) 113, 941
ZrmI AGTACT 2 cut(s) 117, 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.