Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0006690

Physical Location & Seq

Genomic Coordinates Forward (+)

5034881 .. 5037673

Gene Structure 2793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G047500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCAGTTTATTCTGGTGAAAATTCAGTGGAGAGCAAAAGTTCACTCTCTGGAATTGCTCCACTTGAAGCAGTACTATTTGATATTGATGGAACTCTGTGTGATTCAGATCCCATTCATTGCCATGCCTTCCGTGAAATGCTTCAAGAGATAGGTTTCAGTGGAGGGGTTCCAATTACTGAAGAATACTACATTGAGAATATTGGAGGCAGGCATAATGATGATATTGCCAAGATACTCTTTCCTGATGATTTCCAAAGAGGCTTGAAGTTCACAGATGACAAGGAAGTCATGTTTCGAAAATTGGCCCCAGGACAATTGAAGCCTGTGAAAGGCCTCCATAAATTGAGGAAGTGGATTGAAGATCGCGGGTTGAAACGGGCTGCAGTTAGTAATGCTCCAAGACCAAACGCTGAACTAATGATCTCAATTCTTGGCCTATCAGATTTCTTTCATGCTGTTATTCTCGGGAGTGACTGTGAACATGTGAAGCCACATCCAGAGCCCTACTTAAAGGCACTTGAAACACTCAACGCATCAAAGGATCACACTTTTGTGTTTGAGGATTCTGCTTCAGGGATTAAAGCTGGAGTGGCAGCTGGTATGCCGGTTGTCGGCTTAACCACCGGAAATCCAGCACATCTACTAATGGAAGCAAAACCTACCTTTCTCATAAAGGATTATGAGGATCCAAAGTTGTGGGCAGCATTAGAAGAGCTTGATAAGATGGGTGGTACTGCTATTTCTACAAGTGGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003850 GO:0004346 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0042578 GO:0044237 GO:0050308 GO:0050309

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

254

Amino Acids

27.58

Weight (kDa)

5.28

Isoelectric Point (pI)

39.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38740
fragaria_vesca	FvH4_5g21050 FvH4_5g21050 FvH4_5g21050 FvH4_5g21050 FvH4_5g21050
malus_domestica	MD06G1041200.v1.1 MD12G1227700.v1.1 MD15G1033000.v1.1
prunus_persica	Prupe.5G047500_v2.0.a1 Prupe.5G047600_v2.0.a1 Prupe.5G047600_v2.0.a1
pyrus_communis	pycom06g03420
rosa_chinensis	RchiOBHm_Chr7g0208111
rosa_laevigata	RLG00000003254
rosa_multiflora	Rmu_sc0000706.1_g000042
rosa_roxburghii	Rroxscaffold_3G00250810
rosa_rugosa	Rorug07G0101400 Rorug07G0101500 Rorug07G0101600 Rorug07G0101700
rosa_samantha	Rh7AG234500 Rh7BG231100 Rh7CG250700 Rh7DG241500
rosa_wichuraiana	Rw7G020080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	287
AccII	CGCG	1 cut(s)	369
AciI	CCGC	1 cut(s)	369
AclWI	GGATC	4 cut(s)	104, 552, 683, 696
AcsI	RAATTY	1 cut(s)	22
AcuI	CTGAAG	2 cut(s)	201, 558
AfaI	GTAC	2 cut(s)	75, 736
AfiI	CCNNNNNNNGG	2 cut(s)	332, 614
AflIII	ACRYGT	1 cut(s)	484
AgsI	TTSAA	7 cut(s)	68, 146, 268, 322, 362, 376, 524
AjnI	CCWGG	1 cut(s)	310
AleI	CACNNNNGTG	1 cut(s)	554
AluBI	AGCT	4 cut(s)	587, 599, 718, 758
AluI	AGCT	4 cut(s)	587, 599, 718, 758
AlwI	GGATC	4 cut(s)	104, 552, 683, 696
Ama87I	CYCGRG	1 cut(s)	467
AoxI	GGCC	3 cut(s)	306, 334, 436
ApeKI	GCWGC	3 cut(s)	383, 596, 704
ApoI	RAATTY	1 cut(s)	22
Asp700I	GAANNNNTTC	1 cut(s)	141
AspS9I	GGNCC	1 cut(s)	307
AsuHPI	GGTGA	1 cut(s)	29
AsuII	TTCGAA	1 cut(s)	298
AvaI	CYCGRG	1 cut(s)	467
BamHI	GGATCC	1 cut(s)	688
BanII	GRGCYC	1 cut(s)	507
BbvI	GCAGC	3 cut(s)	370, 608, 716
BccI	CCATC	2 cut(s)	83, 721
BciT130I	CCWGG	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	384
BisI	GCNGC	3 cut(s)	384, 597, 705
BlsI	GCNGC	3 cut(s)	385, 598, 706
BmcAI	AGTACT	1 cut(s)	75
Bme1390I	CCNGG	1 cut(s)	312
BmeT110I	CYCGRG	1 cut(s)	467
BmgT120I	GGNCC	1 cut(s)	307
BmiI	GGNNCC	3 cut(s)	171, 309, 690
BmrFI	CCNGG	1 cut(s)	312
BmsI	GCATC	1 cut(s)	545
BpmI	CTGGAG	1 cut(s)	609
Bpu14I	TTCGAA	1 cut(s)	298
BsaBI	GATNNNNATC	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	310
BsaWI	WCCGGW	1 cut(s)	626
BsaXI	ACNNNNNCTCC	2 cut(s)	463, 493
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 614
Bse118I	RCCGGY	1 cut(s)	607
Bse3DI	GCAATG	1 cut(s)	118
Bse8I	GATNNNNATC	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	310
BseGI	GGATG	1 cut(s)	496
BseJI	GATNNNNATC	1 cut(s)	108
BseLI	CCNNNNNNNGG	2 cut(s)	332, 614
BseMI	GCAATG	1 cut(s)	118
BseXI	GCAGC	3 cut(s)	370, 608, 716
Bsh1236I	CGCG	1 cut(s)	369
BshFI	GGCC	3 cut(s)	308, 336, 438
BsiHKCI	CYCGRG	1 cut(s)	467
BsiSI	CCGG	2 cut(s)	608, 627
BslI	CCNNNNNNNGG	2 cut(s)	332, 614
BsnI	GGCC	3 cut(s)	308, 336, 438
BsoBI	CYCGRG	1 cut(s)	467
Bsp119I	TTCGAA	1 cut(s)	298
Bsp1286I	GDGCHC	1 cut(s)	507
Bsp143I	GATC	5 cut(s)	109, 364, 423, 544, 688
BspACI	CCGC	1 cut(s)	369
BspANI	GGCC	3 cut(s)	308, 336, 438
BspFNI	CGCG	1 cut(s)	369
BspLI	GGNNCC	3 cut(s)	171, 309, 690
BspMAI	CTGCAG	1 cut(s)	388
BspPI	GGATC	4 cut(s)	104, 552, 683, 696
BspQI	GCTCTTC	1 cut(s)	708
BspT104I	TTCGAA	1 cut(s)	298
BsrDI	GCAATG	1 cut(s)	118
BsrFI	RCCGGY	1 cut(s)	607
BssAI	RCCGGY	1 cut(s)	607
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	5 cut(s)	109, 364, 423, 544, 688
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	1 cut(s)	479
Bst6I	CTCTTC	1 cut(s)	708
BstBI	TTCGAA	1 cut(s)	298
BstC8I	GCNNGC	1 cut(s)	212
BstENI	CCTNNNNNAGG	1 cut(s)	330
BstF5I	GGATG	1 cut(s)	496
BstFNI	CGCG	1 cut(s)	369
BstKTI	GATC	5 cut(s)	112, 367, 426, 547, 691
BstMBI	GATC	5 cut(s)	109, 364, 423, 544, 688
BstMWI	GCNNNNNNNGC	1 cut(s)	593
BstNI	CCWGG	1 cut(s)	312
BstNSI	RCATGY	1 cut(s)	488
BstSCI	CCNGG	1 cut(s)	310
BstSFI	CTRYAG	1 cut(s)	384
BstUI	CGCG	1 cut(s)	369
BstV1I	GCAGC	3 cut(s)	370, 608, 716
BstX2I	RGATCY	2 cut(s)	109, 688
BstXI	CCANNNNNNTGG	1 cut(s)	699
BstYI	RGATCY	2 cut(s)	109, 688
BsuRI	GGCC	3 cut(s)	308, 336, 438
BtsCI	GGATG	1 cut(s)	496
BtsIMutI	CAGTG	2 cut(s)	33, 166
Cac8I	GCNNGC	1 cut(s)	212
Cfr10I	RCCGGY	1 cut(s)	607
Cfr13I	GGNCC	1 cut(s)	307
Csp6I	GTAC	2 cut(s)	74, 735
CviAII	CATG	4 cut(s)	125, 292, 455, 485
CviQI	GTAC	2 cut(s)	74, 735
DpnI	GATC	5 cut(s)	111, 366, 425, 546, 690
DpnII	GATC	5 cut(s)	109, 364, 423, 544, 688
DrdI	GACNNNNNNGTC	1 cut(s)	287
DseDI	GACNNNNNNGTC	1 cut(s)	287
Eam1104I	CTCTTC	1 cut(s)	708
EarI	CTCTTC	1 cut(s)	708
Eco147I	AGGCCT	1 cut(s)	336
Eco24I	GRGCYC	1 cut(s)	507
Eco57I	CTGAAG	2 cut(s)	201, 558
Eco88I	CYCGRG	1 cut(s)	467
EcoNI	CCTNNNNNAGG	1 cut(s)	330
EcoRII	CCWGG	1 cut(s)	310
EcoT38I	GRGCYC	1 cut(s)	507
FaeI	CATG	4 cut(s)	128, 295, 458, 488
FaiI	YATR	9 cut(s)	126, 216, 293, 342, 456, 486, 605, 674, 684
FalI	AAGNNNNNCTT	3 cut(s)	224, 256, 742
FatI	CATG	4 cut(s)	124, 291, 454, 484
FauI	CCCGC	1 cut(s)	362
Fnu4HI	GCNGC	3 cut(s)	384, 597, 705
FokI	GGATG	1 cut(s)	483
FriOI	GRGCYC	1 cut(s)	507
Fsp4HI	GCNGC	3 cut(s)	384, 597, 705
GluI	GCNGC	3 cut(s)	384, 597, 705
GsuI	CTGGAG	1 cut(s)	609
HaeIII	GGCC	3 cut(s)	308, 336, 438
HapII	CCGG	2 cut(s)	608, 627
Hin1II	CATG	4 cut(s)	128, 295, 458, 488
HinfI	GANTC	2 cut(s)	104, 566
HpaII	CCGG	2 cut(s)	608, 627
HphI	GGTGA	1 cut(s)	29
Hpy166II	GTNNAC	3 cut(s)	44, 273, 482
Hpy188I	TCNGA	2 cut(s)	109, 445
Hpy188III	TCNNGA	5 cut(s)	51, 146, 245, 469, 500
Hpy8I	GTNNAC	3 cut(s)	44, 273, 482
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	1 cut(s)	479
HpyCH4V	TGCA	1 cut(s)	386
HpyF10VI	GCNNNNNNNGC	1 cut(s)	593
Hsp92II	CATG	4 cut(s)	128, 295, 458, 488
Kzo9I	GATC	5 cut(s)	109, 364, 423, 544, 688
LguI	GCTCTTC	1 cut(s)	708
LmnI	GCTCC	3 cut(s)	64, 403, 755
Lsp1109I	GCAGC	3 cut(s)	370, 608, 716
LweI	GCATC	1 cut(s)	545
MaeIII	GTNAC	1 cut(s)	473
MalI	GATC	5 cut(s)	111, 366, 425, 546, 690
MboI	GATC	5 cut(s)	109, 364, 423, 544, 688
MboII	GAAGA	3 cut(s)	194, 374, 725
MfeI	CAATTG	1 cut(s)	317
MflI	RGATCY	2 cut(s)	109, 688
MhlI	GDGCHC	1 cut(s)	507
MluCI	AATT	7 cut(s)	22, 54, 174, 302, 317, 344, 429
MnlI	CCTC	7 cut(s)	158, 200, 254, 342, 347, 556, 679
MroXI	GAANNNNTTC	1 cut(s)	141
MseI	TTAA	4 cut(s)	512, 582, 620, 760
MslI	CAYNNNNRTG	3 cut(s)	123, 219, 554
MspA1I	CMGCKG	1 cut(s)	599
MspI	CCGG	2 cut(s)	608, 627
MspR9I	CCNGG	1 cut(s)	312
MunI	CAATTG	1 cut(s)	317
MvaI	CCWGG	1 cut(s)	312
MvnI	CGCG	1 cut(s)	369
MwoI	GCNNNNNNNGC	1 cut(s)	593
NdeII	GATC	5 cut(s)	109, 364, 423, 544, 688
NlaIII	CATG	4 cut(s)	128, 295, 458, 488
NlaIV	GGNNCC	3 cut(s)	171, 309, 690
NmuCI	GTSAC	1 cut(s)	473
NspI	RCATGY	1 cut(s)	488
NspV	TTCGAA	1 cut(s)	298
OliI	CACNNNNGTG	1 cut(s)	554
PceI	AGGCCT	1 cut(s)	336
PciI	ACATGT	1 cut(s)	484
PciSI	GCTCTTC	1 cut(s)	708
PdmI	GAANNNNTTC	1 cut(s)	141
PfeI	GAWTC	2 cut(s)	104, 566
PkrI	GCNGC	3 cut(s)	385, 598, 706
PscI	ACATGT	1 cut(s)	484
Psp6I	CCWGG	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	3 cut(s)	171, 309, 690
PspPI	GGNCC	1 cut(s)	307
PstI	CTGCAG	1 cut(s)	388
PsuI	RGATCY	2 cut(s)	109, 688
PvuII	CAGCTG	1 cut(s)	599
RsaI	GTAC	2 cut(s)	75, 736
RsaNI	GTAC	2 cut(s)	74, 735
RseI	CAYNNNNRTG	3 cut(s)	123, 219, 554
SapI	GCTCTTC	1 cut(s)	708
SaqAI	TTAA	4 cut(s)	512, 582, 620, 760
SatI	GCNGC	3 cut(s)	384, 597, 705
Sau3AI	GATC	5 cut(s)	109, 364, 423, 544, 688
Sau96I	GGNCC	1 cut(s)	307
ScaI	AGTACT	1 cut(s)	75
ScrFI	CCNGG	1 cut(s)	312
SduI	GDGCHC	1 cut(s)	507
SetI	ASST	7 cut(s)	157, 589, 601, 664, 668, 720, 760
SfaNI	GCATC	1 cut(s)	545
SfcI	CTRYAG	1 cut(s)	384
SfuI	TTCGAA	1 cut(s)	298
SmiMI	CAYNNNNRTG	3 cut(s)	123, 219, 554
Sse9I	AATT	7 cut(s)	22, 54, 174, 302, 317, 344, 429
SseBI	AGGCCT	1 cut(s)	336
SsiI	CCGC	1 cut(s)	369
SspI	AATATT	1 cut(s)	202
StuI	AGGCCT	1 cut(s)	336
StyD4I	CCNGG	1 cut(s)	310
TaaI	ACNGT	1 cut(s)	479
TaqI	TCGA	1 cut(s)	298
TasI	AATT	7 cut(s)	22, 54, 174, 302, 317, 344, 429
TatI	WGTACW	1 cut(s)	73
TfiI	GAWTC	2 cut(s)	104, 566
Tru1I	TTAA	4 cut(s)	512, 582, 620, 760
Tru9I	TTAA	4 cut(s)	512, 582, 620, 760
TscAI	CASTG	2 cut(s)	33, 166
TseFI	GTSAC	1 cut(s)	473
TseI	GCWGC	3 cut(s)	383, 596, 704
Tsp45I	GTSAC	1 cut(s)	473
TspDTI	ATGAA	2 cut(s)	107, 443
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	2 cut(s)	33, 166
XagI	CCTNNNNNAGG	1 cut(s)	330
XapI	RAATTY	1 cut(s)	22
XceI	RCATGY	1 cut(s)	488
XmnI	GAANNNNTTC	1 cut(s)	141
ZrmI	AGTACT	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.