Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006690

Physical Location & Seq

Genomic Coordinates Forward (+)

4301291 .. 4302423

Gene Structure 1133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g03420.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGCCTAATTGTCTTTTTATTTTTCTTTTCTTTGTCTGTGGAACCAGCAAAAGTTCACTCTCTGGAGTTGCTCCACTTGAAGCAGTATTATTTGATATTGATGGAACGCTATGTGATTCGGATCCAATTCATTACTATGCCTTCCGTGAAATGCTACCAGAGATAGGTTTCAACGGAGGTGTTCCGATTACTGAGGAGTACTATATTGAGAATTTCGCTGGGAAGCATAATGATGATGTTGCCAGGATACTCTTTCCGGATGACTTTGAAAGAGGCTTAAAGTTCACAGAAGACAAGGAAGCCATGTTTCGCAGATTGGCCGTAGATAAATTGAAGCCTGTGAATGGTCTCTATAAAGTGAAGAAATGGATTGAAGATCGTGGGTTGAAACGGGCTGCTGTTACTAATGCTCCAAGAGTAAATGCAGAGCTGATGATTTCAATGCTTGGCCTCTCAGATTTTTTTCAAGGTCTTGTCATTGGGAATGAGTGTGAGCATGCTAAGCCACACCCCGAGCCCTACTTGAAGGGTCTTGAAATACTCAAAGCATCAAAAGAACACACTTTTGTGTTCGAGGATTCTGTCTCGGGGATTAAAGCAGCAGTTGCAGCCGGTATGCCAGTCGTTGGATTAACCACGGGAAATCCAGAACACATATTAGTGGAAGCAAAACCCACCTTTCTCATAAAGGACTATGAGGACCCAAAGTTGTGGGCGGCATTGGAAGAACTTGATAAGAAGAGCGGTACAGGTAGCGGTACAAGTAGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003850 GO:0004346 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0042578 GO:0044237 GO:0050308 GO:0050309

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

258

Amino Acids

28.47

Weight (kDa)

5.25

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38740
fragaria_vesca	FvH4_5g21050 FvH4_5g21050 FvH4_5g21050 FvH4_5g21050 FvH4_5g21050
malus_domestica	MD06G1041200.v1.1 MD12G1227700.v1.1 MD15G1033000.v1.1
prunus_persica	Prupe.5G047500_v2.0.a1 Prupe.5G047600_v2.0.a1 Prupe.5G047600_v2.0.a1
pyrus_communis	pycom06g03420
rosa_chinensis	RchiOBHm_Chr7g0208111
rosa_laevigata	RLG00000003254
rosa_multiflora	Rmu_sc0000706.1_g000042
rosa_roxburghii	Rroxscaffold_3G00250810
rosa_rugosa	Rorug07G0101400 Rorug07G0101500 Rorug07G0101600 Rorug07G0101700
rosa_samantha	Rh7AG234500 Rh7BG231100 Rh7CG250700 Rh7DG241500
rosa_wichuraiana	Rw7G020080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	626
AccBSI	CCGCTC	1 cut(s)	744
AccIII	TCCGGA	1 cut(s)	256
AciI	CCGC	3 cut(s)	716, 744, 756
AclWI	GGATC	2 cut(s)	116, 129
AcoI	YGGCCR	1 cut(s)	318
AcsI	RAATTY	1 cut(s)	211
AfaI	GTAC	3 cut(s)	200, 748, 760
AfiI	CCNNNNNNNGG	3 cut(s)	164, 344, 626
AjnI	CCWGG	1 cut(s)	242
AleI	CACNNNNGTG	1 cut(s)	566
AluBI	AGCT	1 cut(s)	430
AluI	AGCT	1 cut(s)	430
Alw26I	GTCTC	2 cut(s)	353, 589
AlwI	GGATC	2 cut(s)	116, 129
Ama87I	CYCGRG	2 cut(s)	512, 586
Aor13HI	TCCGGA	1 cut(s)	256
AoxI	GGCC	2 cut(s)	318, 448
ApeKI	GCWGC	3 cut(s)	395, 599, 608
ApoI	RAATTY	1 cut(s)	211
AspS9I	GGNCC	1 cut(s)	700
AvaI	CYCGRG	2 cut(s)	512, 586
AvaII	GGWCC	1 cut(s)	700
BamHI	GGATCC	1 cut(s)	121
BanII	GRGCYC	1 cut(s)	519
BbsI	GAAGAC	1 cut(s)	297
BbvI	GCAGC	3 cut(s)	382, 611, 620
BccI	CCATC	1 cut(s)	95
BceAI	ACGGC	1 cut(s)	305
BciT130I	CCWGG	1 cut(s)	244
BciVI	GTATCC	1 cut(s)	240
BcoDI	GTCTC	2 cut(s)	353, 589
BfuI	GTATCC	1 cut(s)	240
BisI	GCNGC	4 cut(s)	396, 600, 609, 717
BlpI	GCTNAGC	1 cut(s)	501
BlsI	GCNGC	4 cut(s)	397, 601, 610, 718
BmcAI	AGTACT	1 cut(s)	200
Bme1390I	CCNGG	1 cut(s)	244
Bme18I	GGWCC	1 cut(s)	700
BmeT110I	CYCGRG	2 cut(s)	512, 586
BmgT120I	GGNCC	1 cut(s)	700
BmiI	GGNNCC	3 cut(s)	43, 123, 702
BmrFI	CCNGG	1 cut(s)	244
BmsI	GCATC	1 cut(s)	557
BpiI	GAAGAC	1 cut(s)	297
BpmI	CTGGAG	1 cut(s)	84
Bpu1102I	GCTNAGC	1 cut(s)	501
BsaBI	GATNNNNATC	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	353
BsaJI	CCNNGG	1 cut(s)	636
BsaWI	WCCGGW	1 cut(s)	256
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bsc4I	CCNNNNNNNGG	3 cut(s)	164, 344, 626
Bse118I	RCCGGY	1 cut(s)	611
Bse1I	ACTGG	1 cut(s)	620
Bse8I	GATNNNNATC	1 cut(s)	120
BseAI	TCCGGA	1 cut(s)	256
BseBI	CCWGG	1 cut(s)	244
BseDI	CCNNGG	1 cut(s)	636
BseGI	GGATG	1 cut(s)	265
BseJI	GATNNNNATC	1 cut(s)	120
BseLI	CCNNNNNNNGG	3 cut(s)	164, 344, 626
BseMII	CTCAG	2 cut(s)	183, 468
BseNI	ACTGG	1 cut(s)	620
BseRI	GAGGAG	1 cut(s)	209
BseXI	GCAGC	3 cut(s)	382, 611, 620
BseYI	CCCAGC	1 cut(s)	218
BshFI	GGCC	2 cut(s)	320, 450
BsiHKCI	CYCGRG	2 cut(s)	512, 586
BsiSI	CCGG	2 cut(s)	257, 612
BslI	CCNNNNNNNGG	3 cut(s)	164, 344, 626
BsmAI	GTCTC	2 cut(s)	353, 589
BsnI	GGCC	2 cut(s)	320, 450
Bso31I	GGTCTC	1 cut(s)	353
BsoBI	CYCGRG	2 cut(s)	512, 586
Bsp1286I	GDGCHC	1 cut(s)	519
Bsp13I	TCCGGA	1 cut(s)	256
Bsp143I	GATC	2 cut(s)	121, 376
Bsp1720I	GCTNAGC	1 cut(s)	501
BspACI	CCGC	3 cut(s)	716, 744, 756
BspANI	GGCC	2 cut(s)	320, 450
BspCNI	CTCAG	2 cut(s)	184, 467
BspEI	TCCGGA	1 cut(s)	256
BspLI	GGNNCC	3 cut(s)	43, 123, 702
BspPI	GGATC	2 cut(s)	116, 129
BspQI	GCTCTTC	1 cut(s)	734
BspTNI	GGTCTC	1 cut(s)	353
BsrBI	CCGCTC	1 cut(s)	744
BsrFI	RCCGGY	1 cut(s)	611
BsrI	ACTGG	1 cut(s)	620
BssAI	RCCGGY	1 cut(s)	611
BssECI	CCNNGG	1 cut(s)	636
BssMI	GATC	2 cut(s)	121, 376
Bst2UI	CCWGG	1 cut(s)	244
Bst6I	CTCTTC	1 cut(s)	734
BstAPI	GCANNNNNTGC	1 cut(s)	605
BstC8I	GCNNGC	1 cut(s)	498
BstDEI	CTNAG	3 cut(s)	192, 454, 501
BstDSI	CCRYGG	1 cut(s)	636
BstF5I	GGATG	1 cut(s)	265
BstKTI	GATC	2 cut(s)	124, 379
BstMAI	GTCTC	2 cut(s)	353, 589
BstMBI	GATC	2 cut(s)	121, 376
BstMWI	GCNNNNNNNGC	3 cut(s)	502, 605, 608
BstNI	CCWGG	1 cut(s)	244
BstNSI	RCATGY	1 cut(s)	500
BstSCI	CCNGG	1 cut(s)	242
BstV1I	GCAGC	3 cut(s)	382, 611, 620
BstV2I	GAAGAC	1 cut(s)	297
BstX2I	RGATCY	1 cut(s)	121
BstXI	CCANNNNNNTGG	1 cut(s)	711
BstYI	RGATCY	1 cut(s)	121
BsuI	GTATCC	1 cut(s)	240
BsuRI	GGCC	2 cut(s)	320, 450
BtgI	CCRYGG	1 cut(s)	636
BtsCI	GGATG	1 cut(s)	265
Cac8I	GCNNGC	1 cut(s)	498
Cfr10I	RCCGGY	1 cut(s)	611
Cfr13I	GGNCC	1 cut(s)	700
Csp6I	GTAC	3 cut(s)	199, 747, 759
CviAII	CATG	3 cut(s)	304, 497, 771
CviQI	GTAC	3 cut(s)	199, 747, 759
DdeI	CTNAG	3 cut(s)	192, 454, 501
DpnI	GATC	2 cut(s)	123, 378
DpnII	GATC	2 cut(s)	121, 376
EaeI	YGGCCR	1 cut(s)	318
Eam1104I	CTCTTC	1 cut(s)	734
EarI	CTCTTC	1 cut(s)	734
Eco24I	GRGCYC	1 cut(s)	519
Eco31I	GGTCTC	1 cut(s)	353
Eco47I	GGWCC	1 cut(s)	700
Eco88I	CYCGRG	2 cut(s)	512, 586
EcoO109I	RGGNCCY	1 cut(s)	700
EcoRII	CCWGG	1 cut(s)	242
EcoT38I	GRGCYC	1 cut(s)	519
FaeI	CATG	3 cut(s)	307, 500, 774
FatI	CATG	3 cut(s)	303, 496, 770
Fnu4HI	GCNGC	4 cut(s)	396, 600, 609, 717
FokI	GGATG	1 cut(s)	272
FriOI	GRGCYC	1 cut(s)	519
Fsp4HI	GCNGC	4 cut(s)	396, 600, 609, 717
GluI	GCNGC	4 cut(s)	396, 600, 609, 717
GsaI	CCCAGC	1 cut(s)	222
GsuI	CTGGAG	1 cut(s)	84
HaeIII	GGCC	2 cut(s)	320, 450
HapII	CCGG	2 cut(s)	257, 612
Hin1II	CATG	3 cut(s)	307, 500, 774
HinfI	GANTC	2 cut(s)	116, 578
HpaII	CCGG	2 cut(s)	257, 612
Hpy166II	GTNNAC	2 cut(s)	56, 285
Hpy188I	TCNGA	3 cut(s)	121, 186, 457
Hpy188III	TCNNGA	4 cut(s)	63, 257, 533, 647
Hpy8I	GTNNAC	2 cut(s)	56, 285
HpyAV	CCTTC	2 cut(s)	151, 520
HpyCH4V	TGCA	2 cut(s)	425, 608
HpyF10VI	GCNNNNNNNGC	3 cut(s)	502, 605, 608
HpyF3I	CTNAG	3 cut(s)	192, 454, 501
Hsp92II	CATG	3 cut(s)	307, 500, 774
Kpn2I	TCCGGA	1 cut(s)	256
Kzo9I	GATC	2 cut(s)	121, 376
LguI	GCTCTTC	1 cut(s)	734
LmnI	GCTCC	2 cut(s)	76, 415
Lsp1109I	GCAGC	3 cut(s)	382, 611, 620
LweI	GCATC	1 cut(s)	557
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	2 cut(s)	123, 378
MbiI	CCGCTC	1 cut(s)	744
MboI	GATC	2 cut(s)	121, 376
MboII	GAAGA	5 cut(s)	302, 373, 386, 737, 751
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	1 cut(s)	519
MluCI	AATT	4 cut(s)	7, 126, 211, 329
MmeI	TCCRAC	1 cut(s)	607
MnlI	CCTC	6 cut(s)	170, 187, 266, 461, 568, 691
MroI	TCCGGA	1 cut(s)	256
MseI	TTAA	3 cut(s)	278, 594, 632
MslI	CAYNNNNRTG	4 cut(s)	135, 231, 566, 659
MspI	CCGG	2 cut(s)	257, 612
MspR9I	CCNGG	1 cut(s)	244
MvaI	CCWGG	1 cut(s)	244
MwoI	GCNNNNNNNGC	3 cut(s)	502, 605, 608
NdeII	GATC	2 cut(s)	121, 376
NlaIII	CATG	3 cut(s)	307, 500, 774
NlaIV	GGNNCC	3 cut(s)	43, 123, 702
NspI	RCATGY	1 cut(s)	500
OliI	CACNNNNGTG	1 cut(s)	566
PaeI	GCATGC	1 cut(s)	500
PciSI	GCTCTTC	1 cut(s)	734
PfeI	GAWTC	2 cut(s)	116, 578
PflMI	CCANNNNNTGG	1 cut(s)	626
PkrI	GCNGC	4 cut(s)	397, 601, 610, 718
PpuMI	RGGWCCY	1 cut(s)	700
Psp5II	RGGWCCY	1 cut(s)	700
Psp6I	CCWGG	1 cut(s)	242
PspFI	CCCAGC	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	242
PspN4I	GGNNCC	3 cut(s)	43, 123, 702
PspPI	GGNCC	1 cut(s)	700
PspPPI	RGGWCCY	1 cut(s)	700
PsuI	RGATCY	1 cut(s)	121
RsaI	GTAC	3 cut(s)	200, 748, 760
RsaNI	GTAC	3 cut(s)	199, 747, 759
RseI	CAYNNNNRTG	4 cut(s)	135, 231, 566, 659
SapI	GCTCTTC	1 cut(s)	734
SaqAI	TTAA	3 cut(s)	278, 594, 632
SatI	GCNGC	4 cut(s)	396, 600, 609, 717
Sau3AI	GATC	2 cut(s)	121, 376
Sau96I	GGNCC	1 cut(s)	700
ScaI	AGTACT	1 cut(s)	200
ScrFI	CCNGG	1 cut(s)	244
SduI	GDGCHC	1 cut(s)	519
SetI	ASST	6 cut(s)	169, 181, 432, 472, 680, 754
SfaNI	GCATC	1 cut(s)	557
SinI	GGWCC	1 cut(s)	700
SmiMI	CAYNNNNRTG	4 cut(s)	135, 231, 566, 659
SphI	GCATGC	1 cut(s)	500
Sse9I	AATT	4 cut(s)	7, 126, 211, 329
SsiI	CCGC	3 cut(s)	716, 744, 756
StyD4I	CCNGG	1 cut(s)	242
TaqI	TCGA	1 cut(s)	573
TasI	AATT	4 cut(s)	7, 126, 211, 329
TatI	WGTACW	1 cut(s)	198
TauI	GCSGC	1 cut(s)	719
TfiI	GAWTC	2 cut(s)	116, 578
Tru1I	TTAA	3 cut(s)	278, 594, 632
Tru9I	TTAA	3 cut(s)	278, 594, 632
TseI	GCWGC	3 cut(s)	395, 599, 608
TspDTI	ATGAA	1 cut(s)	119
TspGWI	ACGGA	2 cut(s)	134, 189
Van91I	CCANNNNNTGG	1 cut(s)	626
VpaK11BI	GGWCC	1 cut(s)	700
XapI	RAATTY	1 cut(s)	211
XceI	RCATGY	1 cut(s)	500
ZrmI	AGTACT	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.