Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0006690

Physical Location & Seq

Genomic Coordinates Forward (+)

5038287 .. 5041683

Gene Structure 3397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G047600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGACAGCTTCTTCTGGTGAAAACTCTGTGGACAGCAAAAGTTCACTCTCTGGACTTGCCCCACTTGAAGCAGTACTATTTGATATTGATGGAACTCTGTGTGATTCAGATCCCATTCATTTCTATGCCTTCCGCGAAATGCTTCCAGAGATAGGTTTCAATGGAGGGGTTCCAATCACTGCGGAGTACTATATTGAGAATTTTGCTGGGAAGCATAATGATGATGTTGCTAGGATACTCTTTCCTGATGACTTCGAAAGAGGCTTAAAGTTCACTGAGGACAAGGAAGCCATGTTTCGTAGATTGGCAACAGAACAATTGAAGCCTGTGAATGGCATTTATAAAGTGAAGAAATGGGTTGAAGATCGTGGGCTGAAACGGGCTGCCGTTACTAATGCTCCCAGACCAAATGCTGAGCTAATGCTCACAATACTTGGCCTCACAGATTTTTTTCAAGCTCTTATTATTGGGAACGAGTGCAAGCATGCCAAGCCACACCCAGAGCCCTACTTGAAGGCTCTTGAAATACTCAACGTATCAAAAGATCACACTTTTGTGTTTGAGGATTCTGTCTCTGGGATTAAAGCTGGAGTTGCAGCCGGTATGCCAGTTATTGGTTTAACCACCGGAAATCCAGAACACATACTAATTGAAGAAAAACCGACCTTTCTCATAAAGGATTACAATGATTCAAAATTGTGGGCAGCATTAGAAGAGCTTGATAAGAAGAGTGGTAGCAGTAGCGCTACAAGTGGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003850 GO:0004346 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0042578 GO:0044237 GO:0050308 GO:0050309

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

254

Amino Acids

27.78

Weight (kDa)

5.06

Isoelectric Point (pI)

41.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38740
fragaria_vesca	FvH4_5g21050 FvH4_5g21050 FvH4_5g21050 FvH4_5g21050 FvH4_5g21050
malus_domestica	MD06G1041200.v1.1 MD12G1227700.v1.1 MD15G1033000.v1.1
prunus_persica	Prupe.5G047500_v2.0.a1 Prupe.5G047600_v2.0.a1 Prupe.5G047600_v2.0.a1
pyrus_communis	pycom06g03420
rosa_chinensis	RchiOBHm_Chr7g0208111
rosa_laevigata	RLG00000003254
rosa_multiflora	Rmu_sc0000706.1_g000042
rosa_roxburghii	Rroxscaffold_3G00250810
rosa_rugosa	Rorug07G0101400 Rorug07G0101500 Rorug07G0101600 Rorug07G0101700
rosa_samantha	Rh7AG234500 Rh7BG231100 Rh7CG250700 Rh7DG241500
rosa_wichuraiana	Rw7G020080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	342
AccB7I	CCANNNNNTGG	1 cut(s)	614
AccII	CGCG	1 cut(s)	135
AciI	CCGC	2 cut(s)	133, 182
AclWI	GGATC	1 cut(s)	104
AcsI	RAATTY	1 cut(s)	199
AfaI	GTAC	2 cut(s)	75, 188
AfeI	AGCGCT	1 cut(s)	745
AfiI	CCNNNNNNNGG	3 cut(s)	152, 332, 614
AgsI	TTSAA	9 cut(s)	68, 160, 322, 362, 455, 514, 524, 653, 693
AleI	CACNNNNGTG	1 cut(s)	554
AluBI	AGCT	6 cut(s)	8, 418, 458, 587, 718, 758
AluI	AGCT	6 cut(s)	8, 418, 458, 587, 718, 758
Alw26I	GTCTC	1 cut(s)	577
AlwI	GGATC	1 cut(s)	104
Aor51HI	AGCGCT	1 cut(s)	745
AoxI	GGCC	1 cut(s)	436
ApeKI	GCWGC	3 cut(s)	383, 596, 704
ApoI	RAATTY	1 cut(s)	199
Asp700I	GAANNNNTTC	1 cut(s)	141
AspLEI	GCGC	1 cut(s)	746
AsuHPI	GGTGA	1 cut(s)	29
AsuII	TTCGAA	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	507
BbvI	GCAGC	3 cut(s)	370, 608, 716
BccI	CCATC	1 cut(s)	83
BceAI	ACGGC	1 cut(s)	371
BciVI	GTATCC	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	577
BfaI	CTAG	1 cut(s)	231
BfoI	RGCGCY	1 cut(s)	747
BfuI	GTATCC	1 cut(s)	228
BisI	GCNGC	3 cut(s)	384, 597, 705
BlpI	GCTNAGC	1 cut(s)	414
BlsI	GCNGC	3 cut(s)	385, 598, 706
BmcAI	AGTACT	2 cut(s)	75, 188
BmiI	GGNNCC	1 cut(s)	171
BpmI	CTGGAG	1 cut(s)	609
Bpu1102I	GCTNAGC	1 cut(s)	414
Bpu14I	TTCGAA	1 cut(s)	255
BsaBI	GATNNNNATC	1 cut(s)	108
BsaWI	WCCGGW	1 cut(s)	626
BsaXI	ACNNNNNCTCC	2 cut(s)	382, 412
Bsc4I	CCNNNNNNNGG	3 cut(s)	152, 332, 614
Bse118I	RCCGGY	1 cut(s)	599
Bse1I	ACTGG	1 cut(s)	608
Bse8I	GATNNNNATC	1 cut(s)	108
BseJI	GATNNNNATC	1 cut(s)	108
BseLI	CCNNNNNNNGG	3 cut(s)	152, 332, 614
BseMII	CTCAG	2 cut(s)	267, 405
BseNI	ACTGG	1 cut(s)	608
BseXI	GCAGC	3 cut(s)	370, 608, 716
BseYI	CCCAGC	1 cut(s)	206
Bsh1236I	CGCG	1 cut(s)	135
BshFI	GGCC	1 cut(s)	438
BsiSI	CCGG	2 cut(s)	600, 627
BslI	CCNNNNNNNGG	3 cut(s)	152, 332, 614
BsmAI	GTCTC	1 cut(s)	577
BsnI	GGCC	1 cut(s)	438
Bsp119I	TTCGAA	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	507
Bsp143I	GATC	3 cut(s)	109, 364, 544
Bsp1720I	GCTNAGC	1 cut(s)	414
BspACI	CCGC	2 cut(s)	133, 182
BspANI	GGCC	1 cut(s)	438
BspCNI	CTCAG	2 cut(s)	268, 406
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	1 cut(s)	171
BspPI	GGATC	1 cut(s)	104
BspQI	GCTCTTC	1 cut(s)	708
BspT104I	TTCGAA	1 cut(s)	255
BsrFI	RCCGGY	1 cut(s)	599
BsrI	ACTGG	1 cut(s)	608
BssAI	RCCGGY	1 cut(s)	599
BssMI	GATC	3 cut(s)	109, 364, 544
Bst6I	CTCTTC	2 cut(s)	708, 722
BstBI	TTCGAA	1 cut(s)	255
BstC8I	GCNNGC	2 cut(s)	482, 486
BstDEI	CTNAG	2 cut(s)	276, 414
BstFNI	CGCG	1 cut(s)	135
BstH2I	RGCGCY	1 cut(s)	747
BstHHI	GCGC	1 cut(s)	746
BstKTI	GATC	3 cut(s)	112, 367, 547
BstMAI	GTCTC	1 cut(s)	577
BstMBI	GATC	3 cut(s)	109, 364, 544
BstMWI	GCNNNNNNNGC	2 cut(s)	490, 593
BstNSI	RCATGY	1 cut(s)	488
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	3 cut(s)	370, 608, 716
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BsuI	GTATCC	1 cut(s)	228
BsuRI	GGCC	1 cut(s)	438
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	2 cut(s)	177, 273
Cac8I	GCNNGC	2 cut(s)	482, 486
CfoI	GCGC	1 cut(s)	746
Cfr10I	RCCGGY	1 cut(s)	599
Csp6I	GTAC	2 cut(s)	74, 187
CviAII	CATG	2 cut(s)	292, 485
CviQI	GTAC	2 cut(s)	74, 187
DdeI	CTNAG	2 cut(s)	276, 414
DpnI	GATC	3 cut(s)	111, 366, 546
DpnII	GATC	3 cut(s)	109, 364, 544
Eam1104I	CTCTTC	2 cut(s)	708, 722
EarI	CTCTTC	2 cut(s)	708, 722
Eco24I	GRGCYC	1 cut(s)	507
Eco47III	AGCGCT	1 cut(s)	745
EcoT38I	GRGCYC	1 cut(s)	507
FaeI	CATG	2 cut(s)	295, 488
FaiI	YATR	9 cut(s)	126, 192, 216, 293, 342, 486, 605, 644, 674
FalI	AAGNNNNNCTT	1 cut(s)	742
FatI	CATG	2 cut(s)	291, 484
Fnu4HI	GCNGC	3 cut(s)	384, 597, 705
FriOI	GRGCYC	1 cut(s)	507
Fsp4HI	GCNGC	3 cut(s)	384, 597, 705
FspBI	CTAG	1 cut(s)	231
GlaI	GCGC	1 cut(s)	745
GluI	GCNGC	3 cut(s)	384, 597, 705
GsaI	CCCAGC	1 cut(s)	210
GsuI	CTGGAG	1 cut(s)	609
HaeII	RGCGCY	1 cut(s)	747
HaeIII	GGCC	1 cut(s)	438
HapII	CCGG	2 cut(s)	600, 627
HhaI	GCGC	1 cut(s)	746
Hin1II	CATG	2 cut(s)	295, 488
Hin6I	GCGC	1 cut(s)	744
HinP1I	GCGC	1 cut(s)	744
HinfI	GANTC	3 cut(s)	104, 566, 689
HpaII	CCGG	2 cut(s)	600, 627
HphI	GGTGA	1 cut(s)	29
Hpy166II	GTNNAC	3 cut(s)	31, 44, 273
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	5 cut(s)	51, 146, 245, 521, 635
Hpy8I	GTNNAC	3 cut(s)	31, 44, 273
HpyAV	CCTTC	2 cut(s)	139, 508
HpyCH4IV	ACGT	1 cut(s)	534
HpyCH4V	TGCA	2 cut(s)	480, 596
HpyF10VI	GCNNNNNNNGC	2 cut(s)	490, 593
HpyF3I	CTNAG	2 cut(s)	276, 414
HpySE526I	ACGT	1 cut(s)	534
Hsp92II	CATG	2 cut(s)	295, 488
HspAI	GCGC	1 cut(s)	744
Kzo9I	GATC	3 cut(s)	109, 364, 544
LguI	GCTCTTC	1 cut(s)	708
LmnI	GCTCC	2 cut(s)	403, 755
Lsp1109I	GCAGC	3 cut(s)	370, 608, 716
MaeI	CTAG	1 cut(s)	231
MaeII	ACGT	1 cut(s)	534
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	3 cut(s)	111, 366, 546
MboI	GATC	3 cut(s)	109, 364, 544
MboII	GAAGA	6 cut(s)	3, 361, 374, 665, 725, 739
MfeI	CAATTG	1 cut(s)	317
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	507
MluCI	AATT	4 cut(s)	199, 317, 648, 695
MnlI	CCTC	5 cut(s)	158, 254, 271, 449, 556
MroXI	GAANNNNTTC	1 cut(s)	141
MseI	TTAA	4 cut(s)	266, 582, 620, 760
MslI	CAYNNNNRTG	3 cut(s)	123, 219, 554
MspI	CCGG	2 cut(s)	600, 627
MunI	CAATTG	1 cut(s)	317
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	2 cut(s)	490, 593
NdeII	GATC	3 cut(s)	109, 364, 544
NlaIII	CATG	2 cut(s)	295, 488
NlaIV	GGNNCC	1 cut(s)	171
NspI	RCATGY	1 cut(s)	488
NspV	TTCGAA	1 cut(s)	255
OliI	CACNNNNGTG	1 cut(s)	554
PaeI	GCATGC	1 cut(s)	488
PciSI	GCTCTTC	1 cut(s)	708
PdmI	GAANNNNTTC	1 cut(s)	141
PfeI	GAWTC	3 cut(s)	104, 566, 689
PflMI	CCANNNNNTGG	1 cut(s)	614
PkrI	GCNGC	3 cut(s)	385, 598, 706
PsiI	TTATAA	1 cut(s)	342
PspFI	CCCAGC	1 cut(s)	206
PspN4I	GGNNCC	1 cut(s)	171
PsuI	RGATCY	1 cut(s)	109
RsaI	GTAC	2 cut(s)	75, 188
RsaNI	GTAC	2 cut(s)	74, 187
RseI	CAYNNNNRTG	3 cut(s)	123, 219, 554
SapI	GCTCTTC	1 cut(s)	708
SaqAI	TTAA	4 cut(s)	266, 582, 620, 760
SatI	GCNGC	3 cut(s)	384, 597, 705
Sau3AI	GATC	3 cut(s)	109, 364, 544
ScaI	AGTACT	2 cut(s)	75, 188
SduI	GDGCHC	1 cut(s)	507
SetI	ASST	9 cut(s)	10, 157, 420, 460, 537, 589, 668, 720, 760
SfuI	TTCGAA	1 cut(s)	255
SmiMI	CAYNNNNRTG	3 cut(s)	123, 219, 554
SphI	GCATGC	1 cut(s)	488
Sse9I	AATT	4 cut(s)	199, 317, 648, 695
SsiI	CCGC	2 cut(s)	133, 182
SspMI	CTAG	1 cut(s)	231
TaiI	ACGT	1 cut(s)	537
TaqI	TCGA	1 cut(s)	255
TasI	AATT	4 cut(s)	199, 317, 648, 695
TatI	WGTACW	2 cut(s)	73, 186
TfiI	GAWTC	3 cut(s)	104, 566, 689
Tru1I	TTAA	4 cut(s)	266, 582, 620, 760
Tru9I	TTAA	4 cut(s)	266, 582, 620, 760
TscAI	CASTG	2 cut(s)	184, 280
TseI	GCWGC	3 cut(s)	383, 596, 704
TspDTI	ATGAA	1 cut(s)	107
TspRI	CASTG	2 cut(s)	184, 280
Van91I	CCANNNNNTGG	1 cut(s)	614
XapI	RAATTY	1 cut(s)	199
XceI	RCATGY	1 cut(s)	488
XmnI	GAANNNNTTC	1 cut(s)	141
XspI	CTAG	1 cut(s)	231
ZrmI	AGTACT	2 cut(s)	75, 188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.