Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006690

Physical Location & Seq

Genomic Coordinates Forward (+)

44644918 .. 44647890

Gene Structure 2973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00250810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGACAGCTTCTTCTGGTGAAAGCTCTGTTGTGGACAGCAAAAATGCACTCTCTGGCCTTGCTCCACTAGAAGCAGTACTCTTTGATATTGATGGAACTGTATGTGATTCAGATCCAATTCACTGTGCAGCCTTCCGTGAAATGCTTCAAGAGATAGGTTTCAATGGAGGGGTTCCAATTACTGAGGATTACTATATTCAGAATATTGCTGGTAAGCACAATGATGATGTTGCCAGGCTACTTTTTCCTGATGATTTTGAACGAGGCATAAAGTTCACAGATGAGAAGGAAGCTTTGTTTCGAAGATTGGTTGGAGACAAATTGAAGCCAGTGAGTGGTCTTGATAAAGTGAGGAAATGGGTTGAAGATCGTGGATTGAAACGGGCTGCAGTTACTAATGCTCCCAAGCCAAATGCTGAACTAATGATCTCTATCCTTGGCCTCTCGGATTTTTTCCAAGCTGTTATTCTTGGGAGTGAGTGTGAGCATGCCAAACCTCATCCAGAGCCATACTTGAAGGGCCTTGAAGCGATCAAGGCATCAAAAGAGCACACTTTCATCTTCGAGGATTCTGTTTCGGGGATCAAAGCTGGAGTTGCAGCTGGTATGCCGGTTATTGGTTTAACCACCGGAAATCCAGAACACATATTATTGGAAGCAAAACCCACCCTTATTATCAAGAACTATGATGATCCAAAATTGTGGGCGGCATTAGAAGAGCTTGATAAGAAGAGTGGTACTAGTAGTGCGACAAGTGGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003850 GO:0004346 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0042578 GO:0044237 GO:0050308 GO:0050309

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

254

Amino Acids

27.45

Weight (kDa)

5.06

Isoelectric Point (pI)

32.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	24 - 202	2.4e-25	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	26 - 207	2.6e-28	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006690)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38740
fragaria_vesca	FvH4_5g21050 FvH4_5g21050 FvH4_5g21050 FvH4_5g21050 FvH4_5g21050
malus_domestica	MD06G1041200.v1.1 MD12G1227700.v1.1 MD15G1033000.v1.1
prunus_persica	Prupe.5G047500_v2.0.a1 Prupe.5G047600_v2.0.a1 Prupe.5G047600_v2.0.a1
pyrus_communis	pycom06g03420
rosa_chinensis	RchiOBHm_Chr7g0208111
rosa_laevigata	RLG00000003254
rosa_multiflora	Rmu_sc0000706.1_g000042
rosa_roxburghii	Rroxscaffold_3G00250810
rosa_rugosa	Rorug07G0101400 Rorug07G0101500 Rorug07G0101600 Rorug07G0101700
rosa_samantha	Rh7AG234500 Rh7BG231100 Rh7CG250700 Rh7DG241500
rosa_wichuraiana	Rw7G020080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	335
AciI	CCGC	1 cut(s)	707
AclWI	GGATC	3 cut(s)	107, 590, 686
AfaI	GTAC	2 cut(s)	78, 739
AfiI	CCNNNNNNNGG	2 cut(s)	335, 617
AgsI	TTSAA	8 cut(s)	149, 163, 260, 325, 365, 379, 517, 527
AhlI	ACTAGT	1 cut(s)	740
AjnI	CCWGG	1 cut(s)	233
AjuI	GAANNNNNNNTTGG	2 cut(s)	450, 482
AluBI	AGCT	7 cut(s)	8, 24, 293, 461, 590, 602, 721
AluI	AGCT	7 cut(s)	8, 24, 293, 461, 590, 602, 721
Alw21I	GWGCWC	1 cut(s)	552
Alw26I	GTCTC	1 cut(s)	309
AlwI	GGATC	3 cut(s)	107, 590, 686
AoxI	GGCC	3 cut(s)	55, 439, 520
ApeKI	GCWGC	3 cut(s)	128, 386, 599
Asp700I	GAANNNNTTC	1 cut(s)	144
AspS9I	GGNCC	1 cut(s)	520
AsuHPI	GGTGA	1 cut(s)	29
AsuII	TTCGAA	1 cut(s)	301
Bbv12I	GWGCWC	1 cut(s)	552
BbvI	GCAGC	3 cut(s)	140, 373, 611
BccI	CCATC	1 cut(s)	86
BciT130I	CCWGG	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	309
BcuI	ACTAGT	1 cut(s)	740
BfaI	CTAG	2 cut(s)	68, 741
BfmI	CTRYAG	1 cut(s)	387
BisI	GCNGC	4 cut(s)	129, 387, 600, 708
BlsI	GCNGC	4 cut(s)	130, 388, 601, 709
BmcAI	AGTACT	1 cut(s)	78
Bme1390I	CCNGG	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	520
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	235
BmsI	GCATC	1 cut(s)	548
BpmI	CTGGAG	1 cut(s)	612
Bpu14I	TTCGAA	1 cut(s)	301
BsaBI	GATNNNNATC	2 cut(s)	111, 431
BsaJI	CCNNGG	1 cut(s)	436
BsaWI	WCCGGW	1 cut(s)	629
BsaXI	ACNNNNNCTCC	4 cut(s)	385, 415, 466, 496
Bsc4I	CCNNNNNNNGG	2 cut(s)	335, 617
Bse118I	RCCGGY	1 cut(s)	610
Bse1I	ACTGG	1 cut(s)	329
Bse8I	GATNNNNATC	2 cut(s)	111, 431
BseBI	CCWGG	1 cut(s)	235
BseDI	CCNNGG	1 cut(s)	436
BseGI	GGATG	1 cut(s)	499
BseJI	GATNNNNATC	2 cut(s)	111, 431
BseLI	CCNNNNNNNGG	2 cut(s)	335, 617
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	329
BseXI	GCAGC	3 cut(s)	140, 373, 611
BsgI	GTGCAG	1 cut(s)	147
BshFI	GGCC	3 cut(s)	57, 441, 522
BsiHKAI	GWGCWC	1 cut(s)	552
BsiSI	CCGG	2 cut(s)	611, 630
BslI	CCNNNNNNNGG	2 cut(s)	335, 617
BsmAI	GTCTC	1 cut(s)	309
BsnI	GGCC	3 cut(s)	57, 441, 522
Bsp119I	TTCGAA	1 cut(s)	301
Bsp1286I	GDGCHC	1 cut(s)	552
Bsp143I	GATC	6 cut(s)	112, 367, 426, 531, 582, 691
BspACI	CCGC	1 cut(s)	707
BspANI	GGCC	3 cut(s)	57, 441, 522
BspCNI	CTCAG	1 cut(s)	175
BspLI	GGNNCC	1 cut(s)	174
BspMAI	CTGCAG	1 cut(s)	391
BspPI	GGATC	3 cut(s)	107, 590, 686
BspQI	GCTCTTC	1 cut(s)	711
BspT104I	TTCGAA	1 cut(s)	301
BsrFI	RCCGGY	1 cut(s)	610
BsrI	ACTGG	1 cut(s)	329
BssAI	RCCGGY	1 cut(s)	610
BssECI	CCNNGG	1 cut(s)	436
BssMI	GATC	6 cut(s)	112, 367, 426, 531, 582, 691
BssT1I	CCWWGG	1 cut(s)	436
Bst2UI	CCWGG	1 cut(s)	235
Bst4CI	ACNGT	2 cut(s)	100, 125
Bst6I	CTCTTC	2 cut(s)	711, 725
BstBI	TTCGAA	1 cut(s)	301
BstC8I	GCNNGC	1 cut(s)	489
BstDEI	CTNAG	1 cut(s)	183
BstF5I	GGATG	1 cut(s)	499
BstKTI	GATC	6 cut(s)	115, 370, 429, 534, 585, 694
BstMAI	GTCTC	1 cut(s)	309
BstMBI	GATC	6 cut(s)	112, 367, 426, 531, 582, 691
BstMWI	GCNNNNNNNGC	2 cut(s)	536, 596
BstNI	CCWGG	1 cut(s)	235
BstNSI	RCATGY	1 cut(s)	491
BstSCI	CCNGG	1 cut(s)	233
BstSFI	CTRYAG	1 cut(s)	387
BstV1I	GCAGC	3 cut(s)	140, 373, 611
BstX2I	RGATCY	1 cut(s)	112
BstXI	CCANNNNNNTGG	1 cut(s)	702
BstYI	RGATCY	1 cut(s)	112
BsuRI	GGCC	3 cut(s)	57, 441, 522
BtsCI	GGATG	1 cut(s)	499
BtsIMutI	CAGTG	2 cut(s)	121, 336
Cac8I	GCNNGC	1 cut(s)	489
Cfr10I	RCCGGY	1 cut(s)	610
Cfr13I	GGNCC	1 cut(s)	520
Csp6I	GTAC	2 cut(s)	77, 738
CviAII	CATG	1 cut(s)	488
CviQI	GTAC	2 cut(s)	77, 738
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	6 cut(s)	114, 369, 428, 533, 584, 693
DpnII	GATC	6 cut(s)	112, 367, 426, 531, 582, 691
Eam1104I	CTCTTC	2 cut(s)	711, 725
EarI	CTCTTC	2 cut(s)	711, 725
Eco130I	CCWWGG	1 cut(s)	436
EcoO109I	RGGNCCY	1 cut(s)	520
EcoRII	CCWGG	1 cut(s)	233
EcoT14I	CCWWGG	1 cut(s)	436
ErhI	CCWWGG	1 cut(s)	436
FaeI	CATG	1 cut(s)	491
FaiI	YATR	8 cut(s)	103, 195, 269, 489, 511, 608, 647, 687
FalI	AAGNNNNNCTT	1 cut(s)	745
FatI	CATG	1 cut(s)	487
Fnu4HI	GCNGC	4 cut(s)	129, 387, 600, 708
FokI	GGATG	1 cut(s)	486
Fsp4HI	GCNGC	4 cut(s)	129, 387, 600, 708
FspBI	CTAG	2 cut(s)	68, 741
GluI	GCNGC	4 cut(s)	129, 387, 600, 708
GsuI	CTGGAG	1 cut(s)	612
HaeIII	GGCC	3 cut(s)	57, 441, 522
HapII	CCGG	2 cut(s)	611, 630
Hin1II	CATG	1 cut(s)	491
HindIII	AAGCTT	1 cut(s)	291
HinfI	GANTC	2 cut(s)	107, 569
HpaII	CCGG	2 cut(s)	611, 630
HphI	GGTGA	1 cut(s)	29
Hpy166II	GTNNAC	2 cut(s)	34, 276
Hpy188I	TCNGA	3 cut(s)	112, 201, 448
Hpy188III	TCNNGA	6 cut(s)	149, 248, 341, 503, 638, 679
Hpy8I	GTNNAC	2 cut(s)	34, 276
HpyAV	CCTTC	3 cut(s)	142, 280, 511
HpyCH4III	ACNGT	2 cut(s)	100, 125
HpyCH4V	TGCA	4 cut(s)	47, 128, 389, 599
HpyF10VI	GCNNNNNNNGC	2 cut(s)	536, 596
HpyF3I	CTNAG	1 cut(s)	183
Hsp92II	CATG	1 cut(s)	491
Kzo9I	GATC	6 cut(s)	112, 367, 426, 531, 582, 691
LguI	GCTCTTC	1 cut(s)	711
LmnI	GCTCC	2 cut(s)	67, 406
Lsp1109I	GCAGC	3 cut(s)	140, 373, 611
LweI	GCATC	1 cut(s)	548
MaeI	CTAG	2 cut(s)	68, 741
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	6 cut(s)	114, 369, 428, 533, 584, 693
MboI	GATC	6 cut(s)	112, 367, 426, 531, 582, 691
MboII	GAAGA	6 cut(s)	3, 315, 377, 553, 728, 742
MflI	RGATCY	1 cut(s)	112
MhlI	GDGCHC	1 cut(s)	552
MluCI	AATT	4 cut(s)	117, 177, 320, 698
MmeI	TCCRAC	1 cut(s)	292
MnlI	CCTC	7 cut(s)	161, 178, 257, 345, 452, 507, 559
MroXI	GAANNNNTTC	1 cut(s)	144
MseI	TTAA	2 cut(s)	623, 763
MslI	CAYNNNNRTG	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	602
MspI	CCGG	2 cut(s)	611, 630
MspR9I	CCNGG	1 cut(s)	235
MvaI	CCWGG	1 cut(s)	235
MwoI	GCNNNNNNNGC	2 cut(s)	536, 596
NdeII	GATC	6 cut(s)	112, 367, 426, 531, 582, 691
NlaIII	CATG	1 cut(s)	491
NlaIV	GGNNCC	1 cut(s)	174
NspI	RCATGY	1 cut(s)	491
NspV	TTCGAA	1 cut(s)	301
PaeI	GCATGC	1 cut(s)	491
PciSI	GCTCTTC	1 cut(s)	711
PdmI	GAANNNNTTC	1 cut(s)	144
PfeI	GAWTC	2 cut(s)	107, 569
PflMI	CCANNNNNTGG	1 cut(s)	335
PkrI	GCNGC	4 cut(s)	130, 388, 601, 709
Psp6I	CCWGG	1 cut(s)	233
PspGI	CCWGG	1 cut(s)	233
PspN4I	GGNNCC	1 cut(s)	174
PspPI	GGNCC	1 cut(s)	520
PstI	CTGCAG	1 cut(s)	391
PsuI	RGATCY	1 cut(s)	112
PvuII	CAGCTG	1 cut(s)	602
RsaI	GTAC	2 cut(s)	78, 739
RsaNI	GTAC	2 cut(s)	77, 738
RseI	CAYNNNNRTG	1 cut(s)	222
SapI	GCTCTTC	1 cut(s)	711
SaqAI	TTAA	2 cut(s)	623, 763
SatI	GCNGC	4 cut(s)	129, 387, 600, 708
Sau3AI	GATC	6 cut(s)	112, 367, 426, 531, 582, 691
Sau96I	GGNCC	1 cut(s)	520
ScaI	AGTACT	1 cut(s)	78
ScrFI	CCNGG	1 cut(s)	235
SduI	GDGCHC	1 cut(s)	552
SetI	ASST	9 cut(s)	10, 26, 160, 295, 463, 499, 592, 604, 723
SfaNI	GCATC	1 cut(s)	548
SfcI	CTRYAG	1 cut(s)	387
SfuI	TTCGAA	1 cut(s)	301
SmiMI	CAYNNNNRTG	1 cut(s)	222
SpeI	ACTAGT	1 cut(s)	740
SphI	GCATGC	1 cut(s)	491
Sse9I	AATT	4 cut(s)	117, 177, 320, 698
SsiI	CCGC	1 cut(s)	707
SspI	AATATT	1 cut(s)	205
SspMI	CTAG	2 cut(s)	68, 741
StyD4I	CCNGG	1 cut(s)	233
StyI	CCWWGG	1 cut(s)	436
TaaI	ACNGT	2 cut(s)	100, 125
TaqI	TCGA	2 cut(s)	301, 564
TasI	AATT	4 cut(s)	117, 177, 320, 698
TatI	WGTACW	1 cut(s)	76
TauI	GCSGC	1 cut(s)	710
TfiI	GAWTC	2 cut(s)	107, 569
Tru1I	TTAA	2 cut(s)	623, 763
Tru9I	TTAA	2 cut(s)	623, 763
TscAI	CASTG	2 cut(s)	128, 336
TseI	GCWGC	3 cut(s)	128, 386, 599
TspDTI	ATGAA	1 cut(s)	547
TspGWI	ACGGA	1 cut(s)	125
TspRI	CASTG	2 cut(s)	128, 336
Van91I	CCANNNNNTGG	1 cut(s)	335
XceI	RCATGY	1 cut(s)	491
XmnI	GAANNNNTTC	1 cut(s)	144
XspI	CTAG	2 cut(s)	68, 741
ZrmI	AGTACT	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.