Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003494

Physical Location & Seq

Genomic Coordinates Forward (+)

16291280 .. 16294101

Gene Structure 2822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G39010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGACGAAGGATGAGTTGACGGAGGAAGAGTCGCTCTCCGGCAAGGACTACTTAGACCCACCGCCTGTGAAGACGTTCGAGGTGAGAGAGCTCAAGAAGTGGTCCTTCTACAGAGCTGTCATCGCTGAGTTCATAGCTACTTTGCTCTTTCTATACGTGACTGTTTTGACAGTCATCGGCTTTAAGAGCCAGACTGATATCAACGCCGGCGGCGGAGCTTGTGCCAGTGTCGGCCTCCTAGGCATCTCTTGGGCCTTTGGTGGCATGATATTCATCCTCGTCTACTGCACTGCCGGCATCTCTGGTGGACACATCAATCCCGCGGTGACGTTTGGGCTATTCCTAGCTAGCAAGGTATCATTGGTTAGAGCTGTGTCGTACATGGTGGCTCAGTGTCTCGGAGCCACTTGTGGAGTTGGTTTGGTGAAAGTCTTCCAGTCGACTTATTACAACCGCTACGGTGGTGGAGCCAACATGCTCTCCGACGGATACAATGTTGGCGTTGGGGTTGGTGCTGAGATTATCGGCACTTTTGTCCTCGTCTACACCGTCTTCTCCGCTACCGACCCTAAGCGAAATGCCCGTGACTCTCACATTCCTGTATTAGCACCATTGCCAATTGGATTTTCCGTGTTCATGGTTCATTTAGCCACAATTCCAATTACTGGCACCGGAATAAACCCGGCTAGGAGTTTTGGAGCTGCCGTCATCTACAACAATCAAAAGGCTTGGGATGATCAGTGGATCTTCTGGGTCGGTCCATTTGTGGGTGCAGCCATTGCAGCATTTTACCATCAGTTTGTGTTGAGAGCTGGTGCAATGAAGGCCTATGGGTCAGTCAGGAGCCAGCTTCATGAGCTCCATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005215 GO:0005372 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006833 GO:0006855 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0015250 GO:0015267 GO:0015318 GO:0015893 GO:0016020 GO:0016021 GO:0019899 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0031625 GO:0033993 GO:0034220 GO:0042044 GO:0042221 GO:0042493 GO:0042891 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044389 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071944 GO:0080170 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

289

Amino Acids

31.05

Weight (kDa)

8.28

Isoelectric Point (pI)

31.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	30 - 265	1.3e-82	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39010 AT2G39010 AT3G54820
fragaria_vesca	FvH4_3g32260 FvH4_7g19490 FvH4_7g19490 FvH4_7g19490 FvH4_7g19490
malus_domestica	MD01G1108500.v1.1 MD03G1117900.v1.1 MD07G1174700.v1.1 MD11G1136200.v1.1
prunus_persica	Prupe.2G213600_v2.0.a1 Prupe.6G101600_v2.0.a1
pyrus_communis	pycom01g13550 pycom07g16910 pycom11g11280
rosa_chinensis	RchiOBHm_Chr1g0363361 RchiOBHm_Chr5g0059051
rosa_laevigata	RLG00000027572 RLG00000035277
rosa_multiflora	Rmu_sc0001297.1_g000001 Rmu_sc0002983.1_g000042
rosa_roxburghii	Rroxscaffold_1G00021350 Rroxscaffold_4G00293230
rosa_rugosa	Rorug01G0306500 Rorug05G0320100
rosa_samantha	Rh1AG315400 Rh1BG278600 Rh1CG295100 Rh1DG309700 Rh5BG397000 Rh5DG413100
rosa_wichuraiana	Rw1G027940 Rw5G036290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	668
AccB7I	CCANNNNNTGG	1 cut(s)	665
AccI	GTMKAC	3 cut(s)	282, 440, 543
AccII	CGCG	1 cut(s)	323
AciI	CCGC	7 cut(s)	62, 210, 213, 321, 323, 454, 558
AclWI	GGATC	1 cut(s)	752
AfaI	GTAC	1 cut(s)	380
AfiI	CCNNNNNNNGG	2 cut(s)	665, 767
AjuI	GAANNNNNNNTTGG	2 cut(s)	610, 642
Alw21I	GWGCWC	2 cut(s)	93, 861
Alw26I	GTCTC	1 cut(s)	401
AlwI	GGATC	1 cut(s)	752
AoxI	GGCC	3 cut(s)	232, 252, 825
ApeKI	GCWGC	3 cut(s)	701, 773, 782
Asp700I	GAANNNNTTC	2 cut(s)	74, 431
AspA2I	CCTAGG	1 cut(s)	238
AspS9I	GGNCC	3 cut(s)	102, 252, 758
AsuC2I	CCSGG	1 cut(s)	683
AsuHPI	GGTGA	3 cut(s)	94, 337, 436
AsuNHI	GCTAGC	1 cut(s)	347
AvaII	GGWCC	2 cut(s)	102, 758
AvrII	CCTAGG	1 cut(s)	238
BanI	GGYRCC	1 cut(s)	668
BanII	GRGCYC	2 cut(s)	93, 861
BbsI	GAAGAC	3 cut(s)	77, 424, 544
Bbv12I	GWGCWC	2 cut(s)	93, 861
BbvI	GCAGC	3 cut(s)	688, 785, 794
BccI	CCATC	1 cut(s)	801
BceAI	ACGGC	1 cut(s)	689
BciVI	GTATCC	1 cut(s)	482
BclI	TGATCA	1 cut(s)	736
BcnI	CCSGG	1 cut(s)	683
BcoDI	GTCTC	1 cut(s)	401
BfaI	CTAG	4 cut(s)	239, 344, 348, 687
BfmI	CTRYAG	1 cut(s)	109
BfuI	GTATCC	1 cut(s)	482
BglI	GCCNNNNNGGC	1 cut(s)	240
BisI	GCNGC	4 cut(s)	211, 702, 774, 783
BlnI	CCTAGG	1 cut(s)	238
BlsI	GCNGC	4 cut(s)	212, 703, 775, 784
Bme1390I	CCNGG	1 cut(s)	683
Bme18I	GGWCC	2 cut(s)	102, 758
BmgT120I	GGNCC	3 cut(s)	102, 252, 758
BmiI	GGNNCC	4 cut(s)	403, 469, 670, 845
BmrFI	CCNGG	1 cut(s)	683
BmsI	GCATC	2 cut(s)	252, 306
BmtI	GCTAGC	1 cut(s)	351
BpiI	GAAGAC	3 cut(s)	77, 424, 544
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
Bpu10I	CCTNAGC	1 cut(s)	570
BpuEI	CTTGAG	1 cut(s)	77
BpuMI	CCSGG	1 cut(s)	683
BsaAI	YACGTR	1 cut(s)	157
BsaBI	GATNNNNATC	1 cut(s)	272
BsaJI	CCNNGG	2 cut(s)	238, 321
BsaWI	WCCGGW	1 cut(s)	671
BsaXI	ACNNNNNCTCC	6 cut(s)	14, 44, 464, 494, 690, 720
Bsc4I	CCNNNNNNNGG	2 cut(s)	665, 767
Bse118I	RCCGGY	2 cut(s)	206, 293
Bse1I	ACTGG	3 cut(s)	225, 436, 670
Bse3DI	GCAATG	3 cut(s)	611, 777, 825
Bse8I	GATNNNNATC	1 cut(s)	272
BseDI	CCNNGG	2 cut(s)	238, 321
BseGI	GGATG	3 cut(s)	16, 273, 739
BseJI	GATNNNNATC	1 cut(s)	272
BseLI	CCNNNNNNNGG	2 cut(s)	665, 767
BseMI	GCAATG	3 cut(s)	611, 777, 825
BseMII	CTCAG	3 cut(s)	117, 404, 507
BseNI	ACTGG	3 cut(s)	225, 436, 670
BseXI	GCAGC	3 cut(s)	688, 785, 794
BsgI	GTGCAG	2 cut(s)	271, 792
Bsh1236I	CGCG	1 cut(s)	323
BshFI	GGCC	3 cut(s)	234, 254, 827
BshNI	GGYRCC	1 cut(s)	668
BsiHKAI	GWGCWC	2 cut(s)	93, 861
BsiSI	CCGG	5 cut(s)	39, 207, 294, 672, 683
BslI	CCNNNNNNNGG	2 cut(s)	665, 767
BsmAI	GTCTC	1 cut(s)	401
BsnI	GGCC	3 cut(s)	234, 254, 827
Bsp1286I	GDGCHC	2 cut(s)	93, 861
Bsp143I	GATC	2 cut(s)	736, 744
BspACI	CCGC	7 cut(s)	62, 210, 213, 321, 323, 454, 558
BspANI	GGCC	3 cut(s)	234, 254, 827
BspCNI	CTCAG	3 cut(s)	118, 403, 508
BspFNI	CGCG	1 cut(s)	323
BspHI	TCATGA	1 cut(s)	853
BspLI	GGNNCC	4 cut(s)	403, 469, 670, 845
BspOI	GCTAGC	1 cut(s)	351
BspPI	GGATC	1 cut(s)	752
BspT107I	GGYRCC	1 cut(s)	668
BsrDI	GCAATG	3 cut(s)	611, 777, 825
BsrFI	RCCGGY	2 cut(s)	206, 293
BsrI	ACTGG	3 cut(s)	225, 436, 670
BssAI	RCCGGY	2 cut(s)	206, 293
BssECI	CCNNGG	2 cut(s)	238, 321
BssMI	GATC	2 cut(s)	736, 744
BssT1I	CCWWGG	1 cut(s)	238
Bst4CI	ACNGT	4 cut(s)	163, 172, 461, 550
Bst6I	CTCTTC	1 cut(s)	21
BstAPI	GCANNNNNTGC	1 cut(s)	779
BstBAI	YACGTR	1 cut(s)	157
BstC8I	GCNNGC	4 cut(s)	208, 295, 349, 848
BstDEI	CTNAG	5 cut(s)	52, 126, 390, 516, 570
BstDSI	CCRYGG	1 cut(s)	321
BstF5I	GGATG	3 cut(s)	16, 273, 739
BstFNI	CGCG	1 cut(s)	323
BstKTI	GATC	2 cut(s)	739, 747
BstMAI	GTCTC	1 cut(s)	401
BstMBI	GATC	2 cut(s)	736, 744
BstMWI	GCNNNNNNNGC	8 cut(s)	122, 186, 240, 294, 779, 782, 824, 856
BstNSI	RCATGY	1 cut(s)	478
BstSCI	CCNGG	1 cut(s)	681
BstSFI	CTRYAG	1 cut(s)	109
BstUI	CGCG	1 cut(s)	323
BstV1I	GCAGC	3 cut(s)	688, 785, 794
BstV2I	GAAGAC	3 cut(s)	77, 424, 544
BstX2I	RGATCY	1 cut(s)	744
BstYI	RGATCY	1 cut(s)	744
BsuI	GTATCC	1 cut(s)	482
BsuRI	GGCC	3 cut(s)	234, 254, 827
BtgI	CCRYGG	1 cut(s)	321
BtgZI	GCGATG	1 cut(s)	106
BtsCI	GGATG	3 cut(s)	16, 273, 739
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	4 cut(s)	232, 288, 398, 746
Cac8I	GCNNGC	4 cut(s)	208, 295, 349, 848
CciI	TCATGA	1 cut(s)	853
Cfr10I	RCCGGY	2 cut(s)	206, 293
Cfr13I	GGNCC	3 cut(s)	102, 252, 758
Cfr42I	CCGCGG	1 cut(s)	324
Csp6I	GTAC	1 cut(s)	379
CviAII	CATG	6 cut(s)	265, 382, 475, 637, 854, 863
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	5 cut(s)	52, 126, 390, 516, 570
DpnI	GATC	2 cut(s)	738, 746
DpnII	GATC	2 cut(s)	736, 744
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	228
Ecl136II	GAGCTC	2 cut(s)	91, 859
Eco130I	CCWWGG	1 cut(s)	238
Eco147I	AGGCCT	1 cut(s)	827
Eco24I	GRGCYC	2 cut(s)	93, 861
Eco32I	GATATC	1 cut(s)	199
Eco47I	GGWCC	2 cut(s)	102, 758
Eco53kI	GAGCTC	2 cut(s)	91, 859
EcoICRI	GAGCTC	2 cut(s)	91, 859
EcoRV	GATATC	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	238
EcoT38I	GRGCYC	2 cut(s)	93, 861
ErhI	CCWWGG	1 cut(s)	238
FaeI	CATG	6 cut(s)	268, 385, 478, 640, 857, 866
FaiI	YATR	9 cut(s)	134, 154, 266, 383, 476, 638, 831, 855, 864
FalI	AAGNNNNNCTT	4 cut(s)	35, 67, 89, 121
FatI	CATG	6 cut(s)	264, 381, 474, 636, 853, 862
FauI	CCCGC	1 cut(s)	328
FbaI	TGATCA	1 cut(s)	736
FblI	GTMKAC	3 cut(s)	282, 440, 543
Fnu4HI	GCNGC	4 cut(s)	211, 702, 774, 783
FokI	GGATG	3 cut(s)	23, 260, 746
FriOI	GRGCYC	2 cut(s)	93, 861
Fsp4HI	GCNGC	4 cut(s)	211, 702, 774, 783
FspBI	CTAG	4 cut(s)	239, 344, 348, 687
GluI	GCNGC	4 cut(s)	211, 702, 774, 783
HaeIII	GGCC	3 cut(s)	234, 254, 827
HapII	CCGG	5 cut(s)	39, 207, 294, 672, 683
Hin1II	CATG	6 cut(s)	268, 385, 478, 640, 857, 866
HincII	GTYRAC	2 cut(s)	18, 441
HindII	GTYRAC	2 cut(s)	18, 441
HinfI	GANTC	2 cut(s)	29, 587
HpaII	CCGG	5 cut(s)	39, 207, 294, 672, 683
HphI	GGTGA	3 cut(s)	94, 337, 436
Hpy166II	GTNNAC	5 cut(s)	18, 283, 308, 441, 544
Hpy188I	TCNGA	2 cut(s)	401, 484
Hpy188III	TCNNGA	3 cut(s)	94, 841, 854
Hpy8I	GTNNAC	5 cut(s)	18, 283, 308, 441, 544
Hpy99I	CGWCG	1 cut(s)	488
HpyAV	CCTTC	2 cut(s)	115, 817
HpyCH4III	ACNGT	4 cut(s)	163, 172, 461, 550
HpyCH4IV	ACGT	3 cut(s)	74, 156, 329
HpyCH4V	TGCA	4 cut(s)	288, 773, 782, 818
HpyF10VI	GCNNNNNNNGC	8 cut(s)	122, 186, 240, 294, 779, 782, 824, 856
HpyF3I	CTNAG	5 cut(s)	52, 126, 390, 516, 570
HpySE526I	ACGT	3 cut(s)	74, 156, 329
Hsp92II	CATG	6 cut(s)	268, 385, 478, 640, 857, 866
KroI	GCCGGC	2 cut(s)	206, 293
KroNI	GCCGGC	2 cut(s)	208, 295
Ksp22I	TGATCA	1 cut(s)	736
KspI	CCGCGG	1 cut(s)	324
Kzo9I	GATC	2 cut(s)	736, 744
LmnI	GCTCC	6 cut(s)	215, 401, 467, 698, 843, 864
Lsp1109I	GCAGC	3 cut(s)	688, 785, 794
LweI	GCATC	2 cut(s)	252, 306
MaeI	CTAG	4 cut(s)	239, 344, 348, 687
MaeII	ACGT	3 cut(s)	74, 156, 329
MaeIII	GTNAC	3 cut(s)	157, 325, 584
MalI	GATC	2 cut(s)	738, 746
MboI	GATC	2 cut(s)	736, 744
MboII	GAAGA	5 cut(s)	38, 82, 424, 544, 739
MfeI	CAATTG	1 cut(s)	618
MflI	RGATCY	1 cut(s)	744
MhlI	GDGCHC	2 cut(s)	93, 861
MluCI	AATT	3 cut(s)	618, 654, 660
MlyI	GAGTC	2 cut(s)	38, 581
MmeI	TCCRAC	1 cut(s)	507
MnlI	CCTC	5 cut(s)	16, 73, 245, 287, 548
MreI	CGCCGGCG	1 cut(s)	206
MroNI	GCCGGC	2 cut(s)	206, 293
MroXI	GAANNNNTTC	2 cut(s)	74, 431
MseI	TTAA	2 cut(s)	183, 868
MspA1I	CMGCKG	1 cut(s)	323
MspI	CCGG	5 cut(s)	39, 207, 294, 672, 683
MspR9I	CCNGG	1 cut(s)	683
MunI	CAATTG	1 cut(s)	618
MvnI	CGCG	1 cut(s)	323
MwoI	GCNNNNNNNGC	8 cut(s)	122, 186, 240, 294, 779, 782, 824, 856
NaeI	GCCGGC	2 cut(s)	208, 295
NciI	CCSGG	1 cut(s)	683
NdeII	GATC	2 cut(s)	736, 744
NgoMIV	GCCGGC	2 cut(s)	206, 293
NheI	GCTAGC	1 cut(s)	347
NlaIII	CATG	6 cut(s)	268, 385, 478, 640, 857, 866
NlaIV	GGNNCC	4 cut(s)	403, 469, 670, 845
NmuCI	GTSAC	3 cut(s)	157, 325, 584
NspI	RCATGY	1 cut(s)	478
PagI	TCATGA	1 cut(s)	853
PceI	AGGCCT	1 cut(s)	827
PcsI	WCGNNNNNNNCGW	1 cut(s)	546
PdiI	GCCGGC	2 cut(s)	208, 295
PdmI	GAANNNNTTC	2 cut(s)	74, 431
PflMI	CCANNNNNTGG	1 cut(s)	665
PkrI	GCNGC	4 cut(s)	212, 703, 775, 784
PleI	GAGTC	2 cut(s)	37, 581
PpsI	GAGTC	2 cut(s)	37, 581
Ppu21I	YACGTR	1 cut(s)	157
Psp124BI	GAGCTC	2 cut(s)	93, 861
PspN4I	GGNNCC	4 cut(s)	403, 469, 670, 845
PspPI	GGNCC	3 cut(s)	102, 252, 758
PsuI	RGATCY	1 cut(s)	744
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
SacI	GAGCTC	2 cut(s)	93, 861
SacII	CCGCGG	1 cut(s)	324
SalI	GTCGAC	1 cut(s)	439
SaqAI	TTAA	2 cut(s)	183, 868
SatI	GCNGC	4 cut(s)	211, 702, 774, 783
Sau3AI	GATC	2 cut(s)	736, 744
Sau96I	GGNCC	3 cut(s)	102, 252, 758
SchI	GAGTC	2 cut(s)	38, 581
ScrFI	CCNGG	1 cut(s)	683
SduI	GDGCHC	2 cut(s)	93, 861
SfaNI	GCATC	2 cut(s)	252, 306
SfcI	CTRYAG	1 cut(s)	109
Sfr303I	CCGCGG	1 cut(s)	324
SgrAI	CRCCGGYG	1 cut(s)	206
SgrBI	CCGCGG	1 cut(s)	324
SinI	GGWCC	2 cut(s)	102, 758
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	3 cut(s)	618, 654, 660
SseBI	AGGCCT	1 cut(s)	827
SsiI	CCGC	7 cut(s)	62, 210, 213, 321, 323, 454, 558
SspMI	CTAG	4 cut(s)	239, 344, 348, 687
SstI	GAGCTC	2 cut(s)	93, 861
StuI	AGGCCT	1 cut(s)	827
StyD4I	CCNGG	1 cut(s)	681
StyI	CCWWGG	1 cut(s)	238
TaaI	ACNGT	4 cut(s)	163, 172, 461, 550
TaiI	ACGT	3 cut(s)	77, 159, 332
TaqI	TCGA	2 cut(s)	78, 440
TaqII	GACCGA	1 cut(s)	746
TasI	AATT	3 cut(s)	618, 654, 660
TauI	GCSGC	1 cut(s)	213
Tru1I	TTAA	2 cut(s)	183, 868
Tru9I	TTAA	2 cut(s)	183, 868
TscAI	CASTG	4 cut(s)	232, 295, 398, 746
TseFI	GTSAC	3 cut(s)	157, 325, 584
TseI	GCWGC	3 cut(s)	701, 773, 782
Tsp45I	GTSAC	3 cut(s)	157, 325, 584
TspDTI	ATGAA	6 cut(s)	121, 262, 625, 632, 836, 842
TspGWI	ACGGA	3 cut(s)	35, 501, 619
TspRI	CASTG	4 cut(s)	232, 295, 398, 746
Van91I	CCANNNNNTGG	1 cut(s)	665
VpaK11BI	GGWCC	2 cut(s)	102, 758
XceI	RCATGY	1 cut(s)	478
XmaJI	CCTAGG	1 cut(s)	238
XmiI	GTMKAC	3 cut(s)	282, 440, 543
XmnI	GAANNNNTTC	2 cut(s)	74, 431
XspI	CTAG	4 cut(s)	239, 344, 348, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.