Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003494

Physical Location & Seq

Genomic Coordinates Forward (+)

19398284 .. 19401529

Gene Structure 3246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g16910.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGCCAAGGACATGGAAGTTGCAGAGAGGGGCTCTTTCTCAGCCAAGGACTACCACGACCCACCGCCTGCGCCGCTCATCGACGCGGCCGAGCTCACCAAATGGTCGTTTTACAGAGCTCTCATAGCTGAGTTCGTAGCCACTCTTCTCTTCCTCTACGTCACTGTGCTCACAGTGATTGGCTACAAGAGCCAGACCGACCCAGCTGTCAATGCTGACGCTTGCGGTGGGGTTGGGATTCTGGGAATTGCTTGGGCCTTTGGAGGCATGATCTTTGTGCTTGTTTACTGCACTGCTGGGATTTCAGGGGGTCACATTAACCCGGCGGTGACATTTGGGCTGTTCCTGGCGCGGAAGGTGTCGCTGGTGAGAGCTGTGCTGTACATGGTGGCTCAGTCGTTGGGAGCCATAGCTGGTGTTGCGCTGGTGAAGGCTTTCCAGAAGAGCTACTACATCAAGTACGGCGGTGGAGCCAACTCACTTAGCGATGGGTACAGCACCGGAGTTGGATTGGCTGCTGAGATTATTGGCACCTTTGTGCTGGTTTACACCGTCTTCTCTGCCACTGACCCCAAGAGGAGTGCTAGAGACTCCCATGTTCCGGTTTTGGCTCCACTGCCAATTGGGTTTGCTGTGTTCATTGTCCACTTGGCCACCATCCCAATCACTGGCACTGGCATCAACCCTGCTAGAAGTCTTGGAGCTGCTGTTATCTACAACAAAGACAAGGCTTGGGATGACCAATGGATTTTCTGGGTAGGACCCTTCATTGGAGCAGCAATTGCAGCCTTCTACCACCAATTTATCCTGAGAGCAGGAGCTGTCAAGGCCCTTGGATCATTCAGGAGCAACCCCCATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005215 GO:0005372 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006833 GO:0006855 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0015250 GO:0015267 GO:0015318 GO:0015893 GO:0016020 GO:0016021 GO:0019899 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0031625 GO:0033993 GO:0034220 GO:0042044 GO:0042221 GO:0042493 GO:0042891 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044389 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071944 GO:0080170 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

288

Amino Acids

30.45

Weight (kDa)

8.95

Isoelectric Point (pI)

31.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39010 AT2G39010 AT3G54820
fragaria_vesca	FvH4_3g32260 FvH4_7g19490 FvH4_7g19490 FvH4_7g19490 FvH4_7g19490
malus_domestica	MD01G1108500.v1.1 MD03G1117900.v1.1 MD07G1174700.v1.1 MD11G1136200.v1.1
prunus_persica	Prupe.2G213600_v2.0.a1 Prupe.6G101600_v2.0.a1
pyrus_communis	pycom01g13550 pycom07g16910 pycom11g11280
rosa_chinensis	RchiOBHm_Chr1g0363361 RchiOBHm_Chr5g0059051
rosa_laevigata	RLG00000027572 RLG00000035277
rosa_multiflora	Rmu_sc0001297.1_g000001 Rmu_sc0002983.1_g000042
rosa_roxburghii	Rroxscaffold_1G00021350 Rroxscaffold_4G00293230
rosa_rugosa	Rorug01G0306500 Rorug05G0320100
rosa_samantha	Rh1AG315400 Rh1BG278600 Rh1CG295100 Rh1DG309700 Rh5BG397000 Rh5DG413100
rosa_wichuraiana	Rw1G027940 Rw5G036290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
AccB1I	GGYRCC	1 cut(s)	530
AccB7I	CCANNNNNTGG	1 cut(s)	668
AccBSI	CCGCTC	1 cut(s)	76
AccII	CGCG	2 cut(s)	86, 352
AciI	CCGC	7 cut(s)	65, 74, 86, 225, 326, 352, 465
AclWI	GGATC	1 cut(s)	844
AcoI	YGGCCR	3 cut(s)	3, 87, 651
AfaI	GTAC	3 cut(s)	383, 461, 494
AfiI	CCNNNNNNNGG	3 cut(s)	601, 668, 770
AjnI	CCWGG	1 cut(s)	345
AleI	CACNNNNGTG	1 cut(s)	536
AluBI	AGCT	9 cut(s)	94, 119, 128, 206, 374, 413, 447, 704, 821
AluI	AGCT	9 cut(s)	94, 119, 128, 206, 374, 413, 447, 704, 821
Alw21I	GWGCWC	3 cut(s)	96, 121, 171
Alw26I	GTCTC	1 cut(s)	582
AlwI	GGATC	1 cut(s)	844
AlwNI	CAGNNNCTG	1 cut(s)	821
AoxI	GGCC	5 cut(s)	3, 87, 255, 651, 828
ApeKI	GCWGC	4 cut(s)	515, 704, 776, 785
Asp700I	GAANNNNTTC	1 cut(s)	434
AspLEI	GCGC	3 cut(s)	73, 352, 424
AspS9I	GGNCC	3 cut(s)	255, 761, 829
AsuC2I	CCSGG	1 cut(s)	323
AsuHPI	GGTGA	4 cut(s)	88, 340, 379, 439
AvaII	GGWCC	1 cut(s)	761
BalI	TGGCCA	2 cut(s)	5, 653
BanI	GGYRCC	1 cut(s)	530
BanII	GRGCYC	3 cut(s)	35, 96, 121
BarI	GAAGNNNNNNTAC	4 cut(s)	129, 161, 434, 466
BbsI	GAAGAC	1 cut(s)	547
Bbv12I	GWGCWC	3 cut(s)	96, 121, 171
BbvI	GCAGC	4 cut(s)	502, 691, 788, 797
BccI	CCATC	2 cut(s)	482, 665
BceAI	ACGGC	1 cut(s)	478
BciT130I	CCWGG	1 cut(s)	347
BcnI	CCSGG	1 cut(s)	323
BcoDI	GTCTC	1 cut(s)	582
BfaI	CTAG	2 cut(s)	585, 690
BisI	GCNGC	6 cut(s)	74, 87, 516, 705, 777, 786
BlsI	GCNGC	6 cut(s)	75, 88, 517, 706, 778, 787
Bme1390I	CCNGG	2 cut(s)	323, 347
Bme18I	GGWCC	1 cut(s)	761
BmgT120I	GGNCC	3 cut(s)	255, 761, 829
BmiI	GGNNCC	5 cut(s)	406, 472, 532, 612, 763
BmrFI	CCNGG	2 cut(s)	323, 347
BmsI	GCATC	1 cut(s)	687
BpiI	GAAGAC	1 cut(s)	547
BplI	GAGNNNNNCTC	2 cut(s)	17, 49
BpuMI	CCSGG	1 cut(s)	323
BsaJI	CCNNGG	3 cut(s)	6, 45, 832
BsaWI	WCCGGW	2 cut(s)	500, 601
BsaXI	ACNNNNNCTCC	2 cut(s)	693, 723
Bsc4I	CCNNNNNNNGG	3 cut(s)	601, 668, 770
Bse1I	ACTGG	2 cut(s)	673, 679
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	3 cut(s)	6, 45, 832
BseGI	GGATG	2 cut(s)	657, 742
BseLI	CCNNNNNNNGG	3 cut(s)	601, 668, 770
BseMII	CTCAG	5 cut(s)	54, 120, 407, 510, 800
BseNI	ACTGG	2 cut(s)	673, 679
BseRI	GAGGAG	1 cut(s)	592
BseX3I	CGGCCG	1 cut(s)	87
BseXI	GCAGC	4 cut(s)	502, 691, 788, 797
BseYI	CCCAGC	2 cut(s)	202, 296
BsgI	GTGCAG	1 cut(s)	274
Bsh1236I	CGCG	2 cut(s)	86, 352
Bsh1285I	CGRYCG	1 cut(s)	90
BshFI	GGCC	5 cut(s)	5, 89, 257, 653, 830
BshNI	GGYRCC	1 cut(s)	530
BsiEI	CGRYCG	1 cut(s)	90
BsiHKAI	GWGCWC	3 cut(s)	96, 121, 171
BsiSI	CCGG	3 cut(s)	323, 501, 602
BslI	CCNNNNNNNGG	3 cut(s)	601, 668, 770
BsmAI	GTCTC	1 cut(s)	582
BsnI	GGCC	5 cut(s)	5, 89, 257, 653, 830
Bsp1286I	GDGCHC	4 cut(s)	35, 96, 121, 171
Bsp1407I	TGTACA	1 cut(s)	381
Bsp143I	GATC	2 cut(s)	270, 836
BspACI	CCGC	7 cut(s)	65, 74, 86, 225, 326, 352, 465
BspANI	GGCC	5 cut(s)	5, 89, 257, 653, 830
BspCNI	CTCAG	5 cut(s)	53, 121, 406, 511, 801
BspFNI	CGCG	2 cut(s)	86, 352
BspLI	GGNNCC	5 cut(s)	406, 472, 532, 612, 763
BspPI	GGATC	1 cut(s)	844
BspQI	GCTCTTC	1 cut(s)	437
BspT107I	GGYRCC	1 cut(s)	530
BsrBI	CCGCTC	1 cut(s)	76
BsrGI	TGTACA	1 cut(s)	381
BsrI	ACTGG	2 cut(s)	673, 679
BssECI	CCNNGG	3 cut(s)	6, 45, 832
BssMI	GATC	2 cut(s)	270, 836
BssT1I	CCWWGG	3 cut(s)	6, 45, 832
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	3 cut(s)	166, 175, 553
Bst6I	CTCTTC	3 cut(s)	150, 155, 437
BstAPI	GCANNNNNTGC	1 cut(s)	782
BstAUI	TGTACA	1 cut(s)	381
BstC8I	GCNNGC	2 cut(s)	69, 223
BstDEI	CTNAG	6 cut(s)	40, 129, 393, 482, 519, 809
BstF5I	GGATG	2 cut(s)	657, 742
BstFNI	CGCG	2 cut(s)	86, 352
BstHHI	GCGC	3 cut(s)	73, 352, 424
BstKTI	GATC	2 cut(s)	273, 839
BstMAI	GTCTC	1 cut(s)	582
BstMBI	GATC	2 cut(s)	270, 836
BstMCI	CGRYCG	1 cut(s)	90
BstMWI	GCNNNNNNNGC	8 cut(s)	73, 125, 189, 212, 419, 782, 785, 827
BstNI	CCWGG	1 cut(s)	347
BstSCI	CCNGG	2 cut(s)	321, 345
BstUI	CGCG	2 cut(s)	86, 352
BstV1I	GCAGC	4 cut(s)	502, 691, 788, 797
BstV2I	GAAGAC	1 cut(s)	547
BstXI	CCANNNNNNTGG	1 cut(s)	13
BstZI	CGGCCG	1 cut(s)	87
BsuRI	GGCC	5 cut(s)	5, 89, 257, 653, 830
BtgZI	GCGATG	1 cut(s)	501
BtsCI	GGATG	2 cut(s)	657, 742
BtsI	GCAGTG	2 cut(s)	291, 614
BtsIMutI	CAGTG	7 cut(s)	162, 180, 291, 564, 614, 666, 672
Cac8I	GCNNGC	2 cut(s)	69, 223
CaiI	CAGNNNCTG	1 cut(s)	821
CfoI	GCGC	3 cut(s)	73, 352, 424
Cfr13I	GGNCC	3 cut(s)	255, 761, 829
CseI	GACGC	2 cut(s)	92, 227
Csp6I	GTAC	3 cut(s)	382, 460, 493
CviAII	CATG	5 cut(s)	13, 268, 385, 596, 857
CviQI	GTAC	3 cut(s)	382, 460, 493
DdeI	CTNAG	6 cut(s)	40, 129, 393, 482, 519, 809
DpnI	GATC	2 cut(s)	272, 838
DpnII	GATC	2 cut(s)	270, 836
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
EaeI	YGGCCR	3 cut(s)	3, 87, 651
EagI	CGGCCG	1 cut(s)	87
Eam1104I	CTCTTC	3 cut(s)	150, 155, 437
EarI	CTCTTC	3 cut(s)	150, 155, 437
Ecl136II	GAGCTC	2 cut(s)	94, 119
EclXI	CGGCCG	1 cut(s)	87
Eco130I	CCWWGG	3 cut(s)	6, 45, 832
Eco24I	GRGCYC	3 cut(s)	35, 96, 121
Eco47I	GGWCC	1 cut(s)	761
Eco52I	CGGCCG	1 cut(s)	87
Eco53kI	GAGCTC	2 cut(s)	94, 119
EcoICRI	GAGCTC	2 cut(s)	94, 119
EcoO109I	RGGNCCY	2 cut(s)	761, 829
EcoRII	CCWGG	1 cut(s)	345
EcoT14I	CCWWGG	3 cut(s)	6, 45, 832
EcoT38I	GRGCYC	3 cut(s)	35, 96, 121
ErhI	CCWWGG	3 cut(s)	6, 45, 832
FaeI	CATG	5 cut(s)	16, 271, 388, 599, 860
FaiI	YATR	7 cut(s)	14, 125, 269, 386, 410, 597, 858
FatI	CATG	5 cut(s)	12, 267, 384, 595, 856
Fnu4HI	GCNGC	6 cut(s)	74, 87, 516, 705, 777, 786
FokI	GGATG	2 cut(s)	644, 749
FriOI	GRGCYC	3 cut(s)	35, 96, 121
Fsp4HI	GCNGC	6 cut(s)	74, 87, 516, 705, 777, 786
FspBI	CTAG	2 cut(s)	585, 690
GlaI	GCGC	3 cut(s)	72, 351, 423
GluI	GCNGC	6 cut(s)	74, 87, 516, 705, 777, 786
GsaI	CCCAGC	2 cut(s)	206, 300
HaeIII	GGCC	5 cut(s)	5, 89, 257, 653, 830
HapII	CCGG	3 cut(s)	323, 501, 602
HgaI	GACGC	2 cut(s)	92, 227
HhaI	GCGC	3 cut(s)	73, 352, 424
Hin1II	CATG	5 cut(s)	16, 271, 388, 599, 860
Hin6I	GCGC	3 cut(s)	71, 350, 422
HinP1I	GCGC	3 cut(s)	71, 350, 422
HinfI	GANTC	2 cut(s)	238, 590
HpaII	CCGG	3 cut(s)	323, 501, 602
HphI	GGTGA	4 cut(s)	88, 340, 379, 439
Hpy166II	GTNNAC	3 cut(s)	286, 547, 646
Hpy188III	TCNNGA	3 cut(s)	439, 808, 844
Hpy8I	GTNNAC	3 cut(s)	286, 547, 646
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	4 cut(s)	349, 424, 775, 799
HpyCH4III	ACNGT	3 cut(s)	166, 175, 553
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	3 cut(s)	23, 291, 785
HpyF10VI	GCNNNNNNNGC	8 cut(s)	73, 125, 189, 212, 419, 782, 785, 827
HpyF3I	CTNAG	6 cut(s)	40, 129, 393, 482, 519, 809
HpySE526I	ACGT	1 cut(s)	159
Hsp92II	CATG	5 cut(s)	16, 271, 388, 599, 860
HspAI	GCGC	3 cut(s)	71, 350, 422
Kzo9I	GATC	2 cut(s)	270, 836
LguI	GCTCTTC	1 cut(s)	437
LmnI	GCTCC	7 cut(s)	404, 470, 616, 701, 773, 818, 846
Lsp1109I	GCAGC	4 cut(s)	502, 691, 788, 797
LweI	GCATC	1 cut(s)	687
MaeI	CTAG	2 cut(s)	585, 690
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	3 cut(s)	160, 311, 328
MalI	GATC	2 cut(s)	272, 838
MbiI	CCGCTC	1 cut(s)	76
MboI	GATC	2 cut(s)	270, 836
MboII	GAAGA	4 cut(s)	137, 142, 454, 547
MfeI	CAATTG	2 cut(s)	621, 780
MhlI	GDGCHC	4 cut(s)	35, 96, 121, 171
MlsI	TGGCCA	2 cut(s)	5, 653
MluCI	AATT	4 cut(s)	246, 621, 780, 800
MluNI	TGGCCA	2 cut(s)	5, 653
MlyI	GAGTC	1 cut(s)	584
MmeI	TCCRAC	1 cut(s)	487
MnlI	CCTC	4 cut(s)	21, 164, 257, 570
Mox20I	TGGCCA	2 cut(s)	5, 653
MroXI	GAANNNNTTC	1 cut(s)	434
MscI	TGGCCA	2 cut(s)	5, 653
MseI	TTAA	2 cut(s)	318, 862
MslI	CAYNNNNRTG	1 cut(s)	536
Msp20I	TGGCCA	2 cut(s)	5, 653
MspA1I	CMGCKG	1 cut(s)	206
MspI	CCGG	3 cut(s)	323, 501, 602
MspR9I	CCNGG	2 cut(s)	323, 347
MunI	CAATTG	2 cut(s)	621, 780
MvaI	CCWGG	1 cut(s)	347
MvnI	CGCG	2 cut(s)	86, 352
MwoI	GCNNNNNNNGC	8 cut(s)	73, 125, 189, 212, 419, 782, 785, 827
NciI	CCSGG	1 cut(s)	323
NdeII	GATC	2 cut(s)	270, 836
NlaIII	CATG	5 cut(s)	16, 271, 388, 599, 860
NlaIV	GGNNCC	5 cut(s)	406, 472, 532, 612, 763
NmeAIII	GCCGAG	1 cut(s)	115
NmuCI	GTSAC	3 cut(s)	160, 311, 328
OliI	CACNNNNGTG	1 cut(s)	536
PciSI	GCTCTTC	1 cut(s)	437
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	434
PfeI	GAWTC	1 cut(s)	238
PflMI	CCANNNNNTGG	1 cut(s)	668
PkrI	GCNGC	6 cut(s)	75, 88, 517, 706, 778, 787
PleI	GAGTC	1 cut(s)	584
PpsI	GAGTC	1 cut(s)	584
PpuMI	RGGWCCY	1 cut(s)	761
Psp124BI	GAGCTC	2 cut(s)	96, 121
Psp5II	RGGWCCY	1 cut(s)	761
Psp6I	CCWGG	1 cut(s)	345
PspFI	CCCAGC	2 cut(s)	202, 296
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	5 cut(s)	406, 472, 532, 612, 763
PspPI	GGNCC	3 cut(s)	255, 761, 829
PspPPI	RGGWCCY	1 cut(s)	761
PstNI	CAGNNNCTG	1 cut(s)	821
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	3 cut(s)	383, 461, 494
RsaNI	GTAC	3 cut(s)	382, 460, 493
RseI	CAYNNNNRTG	1 cut(s)	536
SacI	GAGCTC	2 cut(s)	96, 121
SapI	GCTCTTC	1 cut(s)	437
SaqAI	TTAA	2 cut(s)	318, 862
SatI	GCNGC	6 cut(s)	74, 87, 516, 705, 777, 786
Sau3AI	GATC	2 cut(s)	270, 836
Sau96I	GGNCC	3 cut(s)	255, 761, 829
SchI	GAGTC	1 cut(s)	584
ScrFI	CCNGG	2 cut(s)	323, 347
SduI	GDGCHC	4 cut(s)	35, 96, 121, 171
SfaNI	GCATC	1 cut(s)	687
SinI	GGWCC	1 cut(s)	761
SmiMI	CAYNNNNRTG	1 cut(s)	536
Sse9I	AATT	4 cut(s)	246, 621, 780, 800
SsiI	CCGC	7 cut(s)	65, 74, 86, 225, 326, 352, 465
SspMI	CTAG	2 cut(s)	585, 690
SstI	GAGCTC	2 cut(s)	96, 121
StyD4I	CCNGG	2 cut(s)	321, 345
StyI	CCWWGG	3 cut(s)	6, 45, 832
TaaI	ACNGT	3 cut(s)	166, 175, 553
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	1 cut(s)	81
TaqII	GACCGA	1 cut(s)	212
TasI	AATT	4 cut(s)	246, 621, 780, 800
TatI	WGTACW	1 cut(s)	381
TauI	GCSGC	2 cut(s)	76, 89
TfiI	GAWTC	1 cut(s)	238
Tru1I	TTAA	2 cut(s)	318, 862
Tru9I	TTAA	2 cut(s)	318, 862
TscAI	CASTG	7 cut(s)	169, 180, 298, 571, 621, 673, 679
TseFI	GTSAC	3 cut(s)	160, 311, 328
TseI	GCWGC	4 cut(s)	515, 704, 776, 785
Tsp45I	GTSAC	3 cut(s)	160, 311, 328
TspDTI	ATGAA	2 cut(s)	628, 757
TspRI	CASTG	7 cut(s)	169, 180, 298, 571, 621, 673, 679
Van91I	CCANNNNNTGG	1 cut(s)	668
VpaK11BI	GGWCC	1 cut(s)	761
XmnI	GAANNNNTTC	1 cut(s)	434
XspI	CTAG	2 cut(s)	585, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.