Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003494

Physical Location & Seq

Genomic Coordinates Forward (+)

16054400 .. 16057907

Gene Structure 3508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g19490.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCGAAAGACGTTGAAGTTGCCGAGAGGGGTTCCTTCTCAGCCAAGGACTACCAGGACCCTCCTCCAGCTCCGCTCTTCGACTCAGTTGAGCTGACCAAATGGTCGTTTTACAGAGCTGTCATAGCTGAGTTCATTGCTACTCTTCTGTTTCTCTACATCACTGTGCTGACTGTGATCGGGTACAAGTCCCAAATCGACCTCGGCGGCGACGCTTGCGGCGGAGTTGGGATTCTTGGTATTGCCTGGGCCTTTGGAGGCATGATCTTCATCCTTGTTTACTGCACTGCCGGAATCTCAGGGGGTCACATTAACCCAGCTGTGACTTTTGGACTGTTCTTGGCTCGGAAGGTGTCGTTGGTCCGAGCTGTGATGTATATTGTTGCTCAGAGTTTGGGTGCCATAGCCGGAGTTGGGCTAGTCAAGGCTTTCCAGAAGTCTTACTACACCAAGTATGGTGGAGGAGCCAATGAGCTTGCTGAAGGGTACAGCACCGGAGTTGGATTGGCTGCTGAGATTATTGGAACCTTTGTCCTGGTTTACACTGTGTTCTCTGCTACTGACCCAAAGAGGAGTGCAAGAGATTCCCATGTTCCGGTTTTGGCACCACTTCCAATTGGGTTTGCTGTGTTCATGGTTCACTTGGCCACCATCCCAATCACCGGCACTGGTATCAACCCTGCAAGAAGTCTTGGAGCTGCAGTAATCTACGACAAGAAGAAAGCTTGGGATGACCAATGGATCTTCTGGGTTGGACCCTTCATCGGTGCCGCAATTGCAGCCTTCTACCACCAATTCATCTTGAGAGCAGGAGCTGTTAAAGCGCTCGGGTCATTCAGGAGCAACCCCCATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005215 GO:0005372 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006833 GO:0006855 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0015250 GO:0015267 GO:0015318 GO:0015893 GO:0016020 GO:0016021 GO:0019899 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0031625 GO:0033993 GO:0034220 GO:0042044 GO:0042221 GO:0042493 GO:0042891 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044389 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071944 GO:0080170 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

286

Amino Acids

30.36

Weight (kDa)

8.94

Isoelectric Point (pI)

33.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	31 - 264	1.7e-82	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39010 AT2G39010 AT3G54820
fragaria_vesca	FvH4_3g32260 FvH4_7g19490 FvH4_7g19490 FvH4_7g19490 FvH4_7g19490
malus_domestica	MD01G1108500.v1.1 MD03G1117900.v1.1 MD07G1174700.v1.1 MD11G1136200.v1.1
prunus_persica	Prupe.2G213600_v2.0.a1 Prupe.6G101600_v2.0.a1
pyrus_communis	pycom01g13550 pycom07g16910 pycom11g11280
rosa_chinensis	RchiOBHm_Chr1g0363361 RchiOBHm_Chr5g0059051
rosa_laevigata	RLG00000027572 RLG00000035277
rosa_multiflora	Rmu_sc0001297.1_g000001 Rmu_sc0002983.1_g000042
rosa_roxburghii	Rroxscaffold_1G00021350 Rroxscaffold_4G00293230
rosa_rugosa	Rorug01G0306500 Rorug05G0320100
rosa_samantha	Rh1AG315400 Rh1BG278600 Rh1CG295100 Rh1DG309700 Rh5BG397000 Rh5DG413100
rosa_wichuraiana	Rw1G027940 Rw5G036290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	103
AccB1I	GGYRCC	3 cut(s)	398, 604, 767
AccBSI	CCGCTC	1 cut(s)	76
AciI	CCGC	5 cut(s)	74, 207, 219, 222, 771
AclWI	GGATC	1 cut(s)	749
AcoI	YGGCCR	1 cut(s)	645
AcuI	CTGAAG	1 cut(s)	501
AfaI	GTAC	2 cut(s)	185, 488
AfeI	AGCGCT	1 cut(s)	825
AfiI	CCNNNNNNNGG	4 cut(s)	414, 595, 662, 764
AgsI	TTSAA	1 cut(s)	17
AjnI	CCWGG	3 cut(s)	54, 245, 534
AjuI	GAANNNNNNNTTGG	2 cut(s)	341, 373
AlwI	GGATC	1 cut(s)	749
AlwNI	CAGNNNCTG	1 cut(s)	815
Ama87I	CYCGRG	1 cut(s)	827
Aor51HI	AGCGCT	1 cut(s)	825
AoxI	GGCC	2 cut(s)	249, 645
ApeKI	GCWGC	3 cut(s)	509, 698, 779
AspLEI	GCGC	1 cut(s)	826
AspS9I	GGNCC	4 cut(s)	58, 249, 361, 755
AsuHPI	GGTGA	1 cut(s)	652
AvaI	CYCGRG	1 cut(s)	827
AvaII	GGWCC	3 cut(s)	58, 361, 755
BalI	TGGCCA	1 cut(s)	647
BanI	GGYRCC	3 cut(s)	398, 604, 767
BarI	GAAGNNNNNNTAC	2 cut(s)	428, 460
BbvI	GCAGC	3 cut(s)	496, 685, 791
BccI	CCATC	1 cut(s)	659
BciT130I	CCWGG	3 cut(s)	56, 247, 536
BfaI	CTAG	1 cut(s)	419
BfmI	CTRYAG	1 cut(s)	699
BfoI	RGCGCY	1 cut(s)	827
BisI	GCNGC	6 cut(s)	208, 220, 510, 699, 771, 780
BlsI	GCNGC	6 cut(s)	209, 221, 511, 700, 772, 781
Bme1390I	CCNGG	3 cut(s)	56, 247, 536
Bme18I	GGWCC	3 cut(s)	58, 361, 755
BmeT110I	CYCGRG	1 cut(s)	827
BmgT120I	GGNCC	4 cut(s)	58, 249, 361, 755
BmiI	GGNNCC	8 cut(s)	34, 60, 400, 466, 526, 606, 757, 769
BmrFI	CCNGG	3 cut(s)	56, 247, 536
BpmI	CTGGAG	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	823
BsaBI	GATNNNNATC	1 cut(s)	269
BsaJI	CCNNGG	3 cut(s)	45, 202, 246
BsaWI	WCCGGW	2 cut(s)	494, 595
BsaXI	ACNNNNNCTCC	2 cut(s)	687, 717
Bsc4I	CCNNNNNNNGG	4 cut(s)	414, 595, 662, 764
Bse118I	RCCGGY	1 cut(s)	662
Bse1I	ACTGG	1 cut(s)	673
Bse3DI	GCAATG	1 cut(s)	135
Bse8I	GATNNNNATC	1 cut(s)	269
BseBI	CCWGG	3 cut(s)	56, 247, 536
BseDI	CCNNGG	3 cut(s)	45, 202, 246
BseGI	GGATG	3 cut(s)	270, 651, 736
BseJI	GATNNNNATC	1 cut(s)	269
BseLI	CCNNNNNNNGG	4 cut(s)	414, 595, 662, 764
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	6 cut(s)	54, 99, 120, 312, 401, 504
BseNI	ACTGG	1 cut(s)	673
BseRI	GAGGAG	3 cut(s)	54, 477, 586
BseXI	GCAGC	3 cut(s)	496, 685, 791
BseYI	CCCAGC	1 cut(s)	316
BsgI	GTGCAG	1 cut(s)	268
BshFI	GGCC	2 cut(s)	251, 647
BshNI	GGYRCC	3 cut(s)	398, 604, 767
BsiHKCI	CYCGRG	1 cut(s)	827
BsiSI	CCGG	5 cut(s)	291, 408, 495, 596, 663
BslFI	GGGAC	1 cut(s)	175
BslI	CCNNNNNNNGG	4 cut(s)	414, 595, 662, 764
BsmFI	GGGAC	1 cut(s)	175
BsnI	GGCC	2 cut(s)	251, 647
BsoBI	CYCGRG	1 cut(s)	827
Bsp143I	GATC	3 cut(s)	177, 264, 741
BspACI	CCGC	5 cut(s)	74, 207, 219, 222, 771
BspANI	GGCC	2 cut(s)	251, 647
BspCNI	CTCAG	6 cut(s)	53, 98, 121, 311, 400, 505
BspLI	GGNNCC	8 cut(s)	34, 60, 400, 466, 526, 606, 757, 769
BspMAI	CTGCAG	1 cut(s)	703
BspPI	GGATC	1 cut(s)	749
BspQI	GCTCTTC	1 cut(s)	83
BspT107I	GGYRCC	3 cut(s)	398, 604, 767
BsrBI	CCGCTC	1 cut(s)	76
BsrDI	GCAATG	1 cut(s)	135
BsrFI	RCCGGY	1 cut(s)	662
BsrI	ACTGG	1 cut(s)	673
BssAI	RCCGGY	1 cut(s)	662
BssECI	CCNNGG	3 cut(s)	45, 202, 246
BssMI	GATC	3 cut(s)	177, 264, 741
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	3 cut(s)	56, 247, 536
Bst4CI	ACNGT	4 cut(s)	166, 175, 336, 547
Bst6I	CTCTTC	2 cut(s)	83, 150
BstC8I	GCNNGC	2 cut(s)	217, 477
BstDEI	CTNAG	6 cut(s)	40, 85, 129, 298, 387, 513
BstF5I	GGATG	3 cut(s)	270, 651, 736
BstH2I	RGCGCY	1 cut(s)	827
BstHHI	GCGC	1 cut(s)	826
BstKTI	GATC	3 cut(s)	180, 267, 744
BstMBI	GATC	3 cut(s)	177, 264, 741
BstMWI	GCNNNNNNNGC	5 cut(s)	125, 216, 776, 779, 821
BstNI	CCWGG	3 cut(s)	56, 247, 536
BstSCI	CCNGG	3 cut(s)	54, 245, 534
BstSFI	CTRYAG	1 cut(s)	699
BstV1I	GCAGC	3 cut(s)	496, 685, 791
BstX2I	RGATCY	1 cut(s)	741
BstYI	RGATCY	1 cut(s)	741
BsuRI	GGCC	2 cut(s)	251, 647
BtsCI	GGATG	3 cut(s)	270, 651, 736
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	4 cut(s)	162, 285, 543, 666
Cac8I	GCNNGC	2 cut(s)	217, 477
CaiI	CAGNNNCTG	1 cut(s)	815
CfoI	GCGC	1 cut(s)	826
Cfr10I	RCCGGY	1 cut(s)	662
Cfr13I	GGNCC	4 cut(s)	58, 249, 361, 755
CseI	GACGC	1 cut(s)	221
Csp6I	GTAC	2 cut(s)	184, 487
CspCI	CAANNNNNGTGG	2 cut(s)	439, 474
CviAII	CATG	3 cut(s)	262, 590, 634
CviQI	GTAC	2 cut(s)	184, 487
DdeI	CTNAG	6 cut(s)	40, 85, 129, 298, 387, 513
DpnI	GATC	3 cut(s)	179, 266, 743
DpnII	GATC	3 cut(s)	177, 264, 741
DrdI	GACNNNNNNGTC	1 cut(s)	103
DseDI	GACNNNNNNGTC	1 cut(s)	103
EaeI	YGGCCR	1 cut(s)	645
Eam1104I	CTCTTC	2 cut(s)	83, 150
EarI	CTCTTC	2 cut(s)	83, 150
EciI	GGCGGA	1 cut(s)	237
Eco130I	CCWWGG	1 cut(s)	45
Eco47I	GGWCC	3 cut(s)	58, 361, 755
Eco47III	AGCGCT	1 cut(s)	825
Eco57I	CTGAAG	1 cut(s)	501
Eco88I	CYCGRG	1 cut(s)	827
EcoO109I	RGGNCCY	1 cut(s)	58
EcoRII	CCWGG	3 cut(s)	54, 245, 534
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	3 cut(s)	265, 593, 637
FaiI	YATR	8 cut(s)	125, 263, 378, 404, 456, 591, 635, 852
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	3 cut(s)	261, 589, 633
Fnu4HI	GCNGC	6 cut(s)	208, 220, 510, 699, 771, 780
FokI	GGATG	3 cut(s)	257, 638, 743
Fsp4HI	GCNGC	6 cut(s)	208, 220, 510, 699, 771, 780
FspBI	CTAG	1 cut(s)	419
GlaI	GCGC	1 cut(s)	825
GluI	GCNGC	6 cut(s)	208, 220, 510, 699, 771, 780
GsaI	CCCAGC	1 cut(s)	320
GsuI	CTGGAG	1 cut(s)	51
HaeII	RGCGCY	1 cut(s)	827
HaeIII	GGCC	2 cut(s)	251, 647
HapII	CCGG	5 cut(s)	291, 408, 495, 596, 663
HgaI	GACGC	1 cut(s)	221
HhaI	GCGC	1 cut(s)	826
Hin1II	CATG	3 cut(s)	265, 593, 637
Hin6I	GCGC	1 cut(s)	824
HinP1I	GCGC	1 cut(s)	824
HindIII	AAGCTT	1 cut(s)	723
HinfI	GANTC	4 cut(s)	83, 232, 294, 584
HpaII	CCGG	5 cut(s)	291, 408, 495, 596, 663
HphI	GGTGA	1 cut(s)	652
Hpy166II	GTNNAC	3 cut(s)	280, 541, 640
Hpy188I	TCNGA	3 cut(s)	348, 365, 390
Hpy188III	TCNNGA	3 cut(s)	433, 802, 838
Hpy8I	GTNNAC	3 cut(s)	280, 541, 640
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	5 cut(s)	46, 343, 476, 769, 793
HpyCH4III	ACNGT	4 cut(s)	166, 175, 336, 547
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	5 cut(s)	285, 578, 683, 701, 779
HpyF10VI	GCNNNNNNNGC	5 cut(s)	125, 216, 776, 779, 821
HpyF3I	CTNAG	6 cut(s)	40, 85, 129, 298, 387, 513
HpySE526I	ACGT	1 cut(s)	12
Hsp92II	CATG	3 cut(s)	265, 593, 637
HspAI	GCGC	1 cut(s)	824
Kzo9I	GATC	3 cut(s)	177, 264, 741
LguI	GCTCTTC	1 cut(s)	83
LmnI	GCTCC	5 cut(s)	76, 464, 695, 812, 840
Lsp1109I	GCAGC	3 cut(s)	496, 685, 791
MaeI	CTAG	1 cut(s)	419
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	2 cut(s)	305, 322
MalI	GATC	3 cut(s)	179, 266, 743
MbiI	CCGCTC	1 cut(s)	76
MboI	GATC	3 cut(s)	177, 264, 741
MboII	GAAGA	5 cut(s)	70, 137, 259, 730, 736
MfeI	CAATTG	2 cut(s)	615, 774
MflI	RGATCY	1 cut(s)	741
MlsI	TGGCCA	1 cut(s)	647
MluCI	AATT	4 cut(s)	615, 774, 794, 853
MluNI	TGGCCA	1 cut(s)	647
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	2 cut(s)	481, 733
MnlI	CCTC	7 cut(s)	21, 72, 75, 212, 251, 455, 564
Mox20I	TGGCCA	1 cut(s)	647
MscI	TGGCCA	1 cut(s)	647
MseI	TTAA	2 cut(s)	312, 819
MslI	CAYNNNNRTG	1 cut(s)	164
Msp20I	TGGCCA	1 cut(s)	647
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	5 cut(s)	291, 408, 495, 596, 663
MspR9I	CCNGG	3 cut(s)	56, 247, 536
MunI	CAATTG	2 cut(s)	615, 774
MvaI	CCWGG	3 cut(s)	56, 247, 536
MwoI	GCNNNNNNNGC	5 cut(s)	125, 216, 776, 779, 821
NdeII	GATC	3 cut(s)	177, 264, 741
NlaIII	CATG	3 cut(s)	265, 593, 637
NlaIV	GGNNCC	8 cut(s)	34, 60, 400, 466, 526, 606, 757, 769
NmeAIII	GCCGAG	2 cut(s)	49, 183
NmuCI	GTSAC	2 cut(s)	305, 322
PciSI	GCTCTTC	1 cut(s)	83
PfeI	GAWTC	3 cut(s)	232, 294, 584
PkrI	GCNGC	6 cut(s)	209, 221, 511, 700, 772, 781
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
PpuMI	RGGWCCY	1 cut(s)	58
Psp5II	RGGWCCY	1 cut(s)	58
Psp6I	CCWGG	3 cut(s)	54, 245, 534
PspFI	CCCAGC	1 cut(s)	316
PspGI	CCWGG	3 cut(s)	54, 245, 534
PspN4I	GGNNCC	8 cut(s)	34, 60, 400, 466, 526, 606, 757, 769
PspPI	GGNCC	4 cut(s)	58, 249, 361, 755
PspPPI	RGGWCCY	1 cut(s)	58
PstI	CTGCAG	1 cut(s)	703
PstNI	CAGNNNCTG	1 cut(s)	815
PsuI	RGATCY	1 cut(s)	741
PvuII	CAGCTG	1 cut(s)	320
RsaI	GTAC	2 cut(s)	185, 488
RsaNI	GTAC	2 cut(s)	184, 487
RseI	CAYNNNNRTG	1 cut(s)	164
SapI	GCTCTTC	1 cut(s)	83
SaqAI	TTAA	2 cut(s)	312, 819
SatI	GCNGC	6 cut(s)	208, 220, 510, 699, 771, 780
Sau3AI	GATC	3 cut(s)	177, 264, 741
Sau96I	GGNCC	4 cut(s)	58, 249, 361, 755
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	3 cut(s)	56, 247, 536
SfcI	CTRYAG	1 cut(s)	699
SinI	GGWCC	3 cut(s)	58, 361, 755
SmiMI	CAYNNNNRTG	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	802
SmoI	CTYRAG	1 cut(s)	802
Sse9I	AATT	4 cut(s)	615, 774, 794, 853
SsiI	CCGC	5 cut(s)	74, 207, 219, 222, 771
SspMI	CTAG	1 cut(s)	419
StyD4I	CCNGG	3 cut(s)	54, 245, 534
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	4 cut(s)	166, 175, 336, 547
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	2 cut(s)	81, 198
TasI	AATT	4 cut(s)	615, 774, 794, 853
TauI	GCSGC	3 cut(s)	210, 222, 773
TfiI	GAWTC	3 cut(s)	232, 294, 584
Tru1I	TTAA	2 cut(s)	312, 819
Tru9I	TTAA	2 cut(s)	312, 819
TscAI	CASTG	4 cut(s)	169, 292, 550, 673
TseFI	GTSAC	2 cut(s)	305, 322
TseI	GCWGC	3 cut(s)	509, 698, 779
Tsp45I	GTSAC	2 cut(s)	305, 322
TspDTI	ATGAA	5 cut(s)	124, 259, 622, 751, 787
TspRI	CASTG	4 cut(s)	169, 292, 550, 673
VpaK11BI	GGWCC	3 cut(s)	58, 361, 755
XspI	CTAG	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.