pycom01g13550

Belongs to the MIP aquaporin (TC 1.A.8) family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
13987678 .. 13990865
3188 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g13550.1

Sequence Viewer

Length: 879 bp
ATGGCCAAGGACATGGAAGTTGCAGAGAGGGGCTCCTTCTCAGCCAAGGACTACCACGACCCGCCGCCTGCGCCGCTCTTCGACCCGGCGGAGTTCGGCAAATGGTCTTTCTACAGAGCTCTCATAGCTGAGTTCGTAGCCACTCTTCTCTTTCTCTACGTTACTGTGCTCACTGTGATTGGCTACAAGAGCCAGAGCGAACTAGATGCTTGCGGTGGGGTTGGGATCCTGGGGATTGCTTGGGCCTTTGGGGGCATGATCTTTGTCCTTGTTTACTGCACTGCTGGGATTTCAGGGGGTCACATTAACCCGGCGGTGACATTTGGGCTGTTCCTGGCTCGGAAGGTGTCGCTGGTGAGAGCTGTTCTGTACATGGTGGCTCAGTCGTTGGGGGCCATAGCCGGTGTTGGGCTGGTGAAGGCTCTCCAGAAGAGCTACTACATCAAGTACGGCGGCGGTGCCAACACACTTAGCGATGGGTACAGCACCGGAGTTGGATTGGCTGCTGAGATTATTGGCACCTTTGTGCTCGTTTACACCGTCTTCTCTGCCACTGACCCCAAGAGGAGTGCTAGAGACTCTCATGTTCCGGTTTTGGCTCCACTGCCAATCGGGTTTGCCGTGTTCATTGTCCACTTGGCCACCATCCCAATCACTGGCACTGGCATCAACCCTGCTAGAAGTCTTGGACCTGCTGTTATTTTCAACCAAGACAAGGCTTGGGATGACCAATGGATTTTCTGGGTTGGACCCTTCATCGGAGCAGCAATTGCAGCCTTCTACCACCAATTTATCTTGAGAGCAGGAGCTGTCAAGGCCCTGATGGATCATTCAGGAGCCACCCGAGTGTTTGAATTTGAATATTTTCTGAGAATGTGA

Protein Analysis

293

Amino Acids

31.37

Weight (kDa)

7.77

Isoelectric Point (pI)

33.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MIP PF00230 32 - 262 1.1e-82 Major intrinsic protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 700
AccB1I GGYRCC 2 cut(s) 458, 518
AccB7I CCANNNNNTGG 1 cut(s) 656
AccBSI CCGCTC 1 cut(s) 76
AciI CCGC 8 cut(s) 62, 65, 74, 89, 213, 314, 453, 456
AclWI GGATC 3 cut(s) 220, 233, 834
AcoI YGGCCR 2 cut(s) 3, 639
AcsI RAATTY 1 cut(s) 854
AfaI GTAC 3 cut(s) 371, 449, 482
AfiI CCNNNNNNNGG 4 cut(s) 408, 656, 715, 758
AgsI TTSAA 3 cut(s) 706, 854, 860
AjnI CCWGG 2 cut(s) 228, 333
AleI CACNNNNGTG 2 cut(s) 524, 845
AluBI AGCT 5 cut(s) 119, 128, 362, 435, 809
AluI AGCT 5 cut(s) 119, 128, 362, 435, 809
Alw21I GWGCWC 3 cut(s) 121, 171, 531
Alw26I GTCTC 1 cut(s) 570
AlwI GGATC 3 cut(s) 220, 233, 834
AlwNI CAGNNNCTG 1 cut(s) 809
Ama87I CYCGRG 1 cut(s) 843
AoxI GGCC 5 cut(s) 3, 243, 393, 639, 816
ApeKI GCWGC 3 cut(s) 503, 764, 773
ApoI RAATTY 1 cut(s) 854
Asp700I GAANNNNTTC 1 cut(s) 864
AspLEI GCGC 1 cut(s) 73
AspS9I GGNCC 5 cut(s) 243, 393, 689, 749, 817
AsuC2I CCSGG 2 cut(s) 86, 311
AsuHPI GGTGA 3 cut(s) 328, 367, 427
AvaI CYCGRG 1 cut(s) 843
AvaII GGWCC 2 cut(s) 689, 749
BalI TGGCCA 2 cut(s) 5, 641
BamHI GGATCC 1 cut(s) 225
BanI GGYRCC 2 cut(s) 458, 518
BanII GRGCYC 2 cut(s) 35, 121
BarI GAAGNNNNNNTAC 4 cut(s) 129, 161, 422, 454
BbsI GAAGAC 1 cut(s) 535
Bbv12I GWGCWC 3 cut(s) 121, 171, 531
BbvI GCAGC 3 cut(s) 490, 776, 785
BccI CCATC 3 cut(s) 470, 653, 817
BceAI ACGGC 2 cut(s) 466, 605
BcgI CGANNNNNNTGC 2 cut(s) 188, 222
BciT130I CCWGG 2 cut(s) 230, 335
BcnI CCSGG 2 cut(s) 86, 311
BcoDI GTCTC 1 cut(s) 570
BfaI CTAG 3 cut(s) 203, 573, 678
BfmI CTRYAG 1 cut(s) 112
BfuAI ACCTGC 1 cut(s) 700
BisI GCNGC 6 cut(s) 65, 74, 454, 504, 765, 774
BlsI GCNGC 6 cut(s) 66, 75, 455, 505, 766, 775
Bme1390I CCNGG 4 cut(s) 86, 230, 311, 335
Bme18I GGWCC 2 cut(s) 689, 749
BmeT110I CYCGRG 1 cut(s) 843
BmgT120I GGNCC 5 cut(s) 243, 393, 689, 749, 817
BmiI GGNNCC 8 cut(s) 34, 227, 394, 460, 520, 600, 751, 838
BmrFI CCNGG 4 cut(s) 86, 230, 311, 335
BmsI GCATC 2 cut(s) 196, 675
BpiI GAAGAC 1 cut(s) 535
BplI GAGNNNNNCTC 2 cut(s) 17, 49
BpmI CTGGAG 1 cut(s) 410
BpuEI CTTGAG 1 cut(s) 817
BpuMI CCSGG 2 cut(s) 86, 311
BsaJI CCNNGG 3 cut(s) 6, 45, 229
BsaWI WCCGGW 2 cut(s) 488, 589
Bsc4I CCNNNNNNNGG 4 cut(s) 408, 656, 715, 758
Bse118I RCCGGY 1 cut(s) 401
Bse1I ACTGG 2 cut(s) 661, 667
BseBI CCWGG 2 cut(s) 230, 335
BseDI CCNNGG 3 cut(s) 6, 45, 229
BseGI GGATG 2 cut(s) 645, 730
BseLI CCNNNNNNNGG 4 cut(s) 408, 656, 715, 758
BseMII CTCAG 5 cut(s) 54, 120, 395, 498, 860
BseNI ACTGG 2 cut(s) 661, 667
BseRI GAGGAG 1 cut(s) 580
BseXI GCAGC 3 cut(s) 490, 776, 785
BseYI CCCAGC 1 cut(s) 284
BsgI GTGCAG 1 cut(s) 262
BshFI GGCC 5 cut(s) 5, 245, 395, 641, 818
BshNI GGYRCC 2 cut(s) 458, 518
BsiHKAI GWGCWC 3 cut(s) 121, 171, 531
BsiHKCI CYCGRG 1 cut(s) 843
BsiSI CCGG 5 cut(s) 86, 311, 402, 489, 590
BslI CCNNNNNNNGG 4 cut(s) 408, 656, 715, 758
BsmAI GTCTC 1 cut(s) 570
BsnI GGCC 5 cut(s) 5, 245, 395, 641, 818
BsoBI CYCGRG 1 cut(s) 843
Bsp1286I GDGCHC 4 cut(s) 35, 121, 171, 531
Bsp1407I TGTACA 1 cut(s) 369
Bsp143I GATC 3 cut(s) 225, 258, 826
BspACI CCGC 8 cut(s) 62, 65, 74, 89, 213, 314, 453, 456
BspANI GGCC 5 cut(s) 5, 245, 395, 641, 818
BspCNI CTCAG 5 cut(s) 53, 121, 394, 499, 861
BspLI GGNNCC 8 cut(s) 34, 227, 394, 460, 520, 600, 751, 838
BspMI ACCTGC 1 cut(s) 700
BspPI GGATC 3 cut(s) 220, 233, 834
BspQI GCTCTTC 2 cut(s) 83, 425
BspT107I GGYRCC 2 cut(s) 458, 518
BsrBI CCGCTC 1 cut(s) 76
BsrFI RCCGGY 1 cut(s) 401
BsrGI TGTACA 1 cut(s) 369
BsrI ACTGG 2 cut(s) 661, 667
BssAI RCCGGY 1 cut(s) 401
BssECI CCNNGG 3 cut(s) 6, 45, 229
BssMI GATC 3 cut(s) 225, 258, 826
BssT1I CCWWGG 2 cut(s) 6, 45
Bst2UI CCWGG 2 cut(s) 230, 335
Bst4CI ACNGT 3 cut(s) 166, 175, 541
Bst6I CTCTTC 3 cut(s) 83, 150, 425
BstAPI GCANNNNNTGC 1 cut(s) 770
BstAUI TGTACA 1 cut(s) 369
BstC8I GCNNGC 2 cut(s) 69, 211
BstDEI CTNAG 6 cut(s) 40, 129, 381, 470, 507, 869
BstF5I GGATG 2 cut(s) 645, 730
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 3 cut(s) 228, 261, 829
BstMAI GTCTC 1 cut(s) 570
BstMBI GATC 3 cut(s) 225, 258, 826
BstMWI GCNNNNNNNGC 7 cut(s) 70, 73, 125, 189, 770, 773, 815
BstNI CCWGG 2 cut(s) 230, 335
BstSCI CCNGG 4 cut(s) 84, 228, 309, 333
BstSFI CTRYAG 1 cut(s) 112
BstV1I GCAGC 3 cut(s) 490, 776, 785
BstV2I GAAGAC 1 cut(s) 535
BstX2I RGATCY 1 cut(s) 225
BstXI CCANNNNNNTGG 1 cut(s) 13
BstYI RGATCY 1 cut(s) 225
BsuRI GGCC 5 cut(s) 5, 245, 395, 641, 818
BtgZI GCGATG 1 cut(s) 489
BtsCI GGATG 2 cut(s) 645, 730
BtsI GCAGTG 2 cut(s) 279, 602
BtsIMutI CAGTG 6 cut(s) 171, 279, 552, 602, 654, 660
BveI ACCTGC 1 cut(s) 700
Cac8I GCNNGC 2 cut(s) 69, 211
CaiI CAGNNNCTG 1 cut(s) 809
CfoI GCGC 1 cut(s) 73
Cfr10I RCCGGY 1 cut(s) 401
Cfr13I GGNCC 5 cut(s) 243, 393, 689, 749, 817
Csp6I GTAC 3 cut(s) 370, 448, 481
CviAII CATG 4 cut(s) 13, 256, 373, 584
CviQI GTAC 3 cut(s) 370, 448, 481
DdeI CTNAG 6 cut(s) 40, 129, 381, 470, 507, 869
DpnI GATC 3 cut(s) 227, 260, 828
DpnII GATC 3 cut(s) 225, 258, 826
EaeI YGGCCR 2 cut(s) 3, 639
Eam1104I CTCTTC 3 cut(s) 83, 150, 425
EarI CTCTTC 3 cut(s) 83, 150, 425
EciI GGCGGA 1 cut(s) 104
Ecl136II GAGCTC 1 cut(s) 119
Eco130I CCWWGG 2 cut(s) 6, 45
Eco24I GRGCYC 2 cut(s) 35, 121
Eco47I GGWCC 2 cut(s) 689, 749
Eco53kI GAGCTC 1 cut(s) 119
Eco88I CYCGRG 1 cut(s) 843
EcoICRI GAGCTC 1 cut(s) 119
EcoO109I RGGNCCY 1 cut(s) 817
EcoRII CCWGG 2 cut(s) 228, 333
EcoT14I CCWWGG 2 cut(s) 6, 45
EcoT38I GRGCYC 2 cut(s) 35, 121
ErhI CCWWGG 2 cut(s) 6, 45
FaeI CATG 4 cut(s) 16, 259, 376, 587
FaiI YATR 6 cut(s) 14, 125, 257, 374, 398, 585
FatI CATG 4 cut(s) 12, 255, 372, 583
FauI CCCGC 1 cut(s) 69
Fnu4HI GCNGC 6 cut(s) 65, 74, 454, 504, 765, 774
FokI GGATG 2 cut(s) 632, 737
FriOI GRGCYC 2 cut(s) 35, 121
Fsp4HI GCNGC 6 cut(s) 65, 74, 454, 504, 765, 774
FspBI CTAG 3 cut(s) 203, 573, 678
GlaI GCGC 1 cut(s) 72
GluI GCNGC 6 cut(s) 65, 74, 454, 504, 765, 774
GsaI CCCAGC 1 cut(s) 288
GsuI CTGGAG 1 cut(s) 410
HaeIII GGCC 5 cut(s) 5, 245, 395, 641, 818
HapII CCGG 5 cut(s) 86, 311, 402, 489, 590
HhaI GCGC 1 cut(s) 73
Hin1II CATG 4 cut(s) 16, 259, 376, 587
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HinfI GANTC 1 cut(s) 578
HpaII CCGG 5 cut(s) 86, 311, 402, 489, 590
HphI GGTGA 3 cut(s) 328, 367, 427
Hpy166II GTNNAC 3 cut(s) 274, 535, 634
Hpy188I TCNGA 3 cut(s) 342, 761, 870
Hpy188III TCNNGA 3 cut(s) 427, 796, 834
Hpy8I GTNNAC 3 cut(s) 274, 535, 634
HpyAV CCTTC 5 cut(s) 46, 337, 412, 763, 787
HpyCH4III ACNGT 3 cut(s) 166, 175, 541
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 3 cut(s) 23, 279, 773
HpyF10VI GCNNNNNNNGC 7 cut(s) 70, 73, 125, 189, 770, 773, 815
HpyF3I CTNAG 6 cut(s) 40, 129, 381, 470, 507, 869
HpySE526I ACGT 1 cut(s) 159
Hsp92II CATG 4 cut(s) 16, 259, 376, 587
HspAI GCGC 1 cut(s) 71
Kzo9I GATC 3 cut(s) 225, 258, 826
LguI GCTCTTC 2 cut(s) 83, 425
LmnI GCTCC 5 cut(s) 38, 604, 761, 806, 836
Lsp1109I GCAGC 3 cut(s) 490, 776, 785
LweI GCATC 2 cut(s) 196, 675
MaeI CTAG 3 cut(s) 203, 573, 678
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 3 cut(s) 160, 299, 316
MalI GATC 3 cut(s) 227, 260, 828
MbiI CCGCTC 1 cut(s) 76
MboI GATC 3 cut(s) 225, 258, 826
MboII GAAGA 4 cut(s) 70, 137, 442, 535
MfeI CAATTG 1 cut(s) 768
MflI RGATCY 1 cut(s) 225
MhlI GDGCHC 4 cut(s) 35, 121, 171, 531
MlsI TGGCCA 2 cut(s) 5, 641
MluCI AATT 3 cut(s) 768, 788, 854
MluNI TGGCCA 2 cut(s) 5, 641
MlyI GAGTC 1 cut(s) 572
MmeI TCCRAC 2 cut(s) 475, 727
MnlI CCTC 2 cut(s) 21, 558
Mox20I TGGCCA 2 cut(s) 5, 641
MroXI GAANNNNTTC 1 cut(s) 864
MscI TGGCCA 2 cut(s) 5, 641
MseI TTAA 1 cut(s) 306
MslI CAYNNNNRTG 2 cut(s) 524, 845
Msp20I TGGCCA 2 cut(s) 5, 641
MspI CCGG 5 cut(s) 86, 311, 402, 489, 590
MspR9I CCNGG 4 cut(s) 86, 230, 311, 335
MunI CAATTG 1 cut(s) 768
MvaI CCWGG 2 cut(s) 230, 335
MwoI GCNNNNNNNGC 7 cut(s) 70, 73, 125, 189, 770, 773, 815
NciI CCSGG 2 cut(s) 86, 311
NdeII GATC 3 cut(s) 225, 258, 826
NlaIII CATG 4 cut(s) 16, 259, 376, 587
NlaIV GGNNCC 8 cut(s) 34, 227, 394, 460, 520, 600, 751, 838
NmuCI GTSAC 2 cut(s) 299, 316
OliI CACNNNNGTG 2 cut(s) 524, 845
PciSI GCTCTTC 2 cut(s) 83, 425
PcsI WCGNNNNNNNCGW 2 cut(s) 537, 618
PdmI GAANNNNTTC 1 cut(s) 864
PflMI CCANNNNNTGG 1 cut(s) 656
PkrI GCNGC 6 cut(s) 66, 75, 455, 505, 766, 775
PleI GAGTC 1 cut(s) 572
PpsI GAGTC 1 cut(s) 572
Psp124BI GAGCTC 1 cut(s) 121
Psp6I CCWGG 2 cut(s) 228, 333
PspFI CCCAGC 1 cut(s) 284
PspGI CCWGG 2 cut(s) 228, 333
PspN4I GGNNCC 8 cut(s) 34, 227, 394, 460, 520, 600, 751, 838
PspPI GGNCC 5 cut(s) 243, 393, 689, 749, 817
PstNI CAGNNNCTG 1 cut(s) 809
PsuI RGATCY 1 cut(s) 225
RsaI GTAC 3 cut(s) 371, 449, 482
RsaNI GTAC 3 cut(s) 370, 448, 481
RseI CAYNNNNRTG 2 cut(s) 524, 845
SacI GAGCTC 1 cut(s) 121
SapI GCTCTTC 2 cut(s) 83, 425
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 6 cut(s) 65, 74, 454, 504, 765, 774
Sau3AI GATC 3 cut(s) 225, 258, 826
Sau96I GGNCC 5 cut(s) 243, 393, 689, 749, 817
SchI GAGTC 1 cut(s) 572
ScrFI CCNGG 4 cut(s) 86, 230, 311, 335
SduI GDGCHC 4 cut(s) 35, 121, 171, 531
SetI ASST 9 cut(s) 121, 130, 162, 348, 364, 437, 524, 694, 811
SfaNI GCATC 2 cut(s) 196, 675
SfcI CTRYAG 1 cut(s) 112
SinI GGWCC 2 cut(s) 689, 749
SmiMI CAYNNNNRTG 2 cut(s) 524, 845
SmlI CTYRAG 1 cut(s) 796
SmoI CTYRAG 1 cut(s) 796
Sse9I AATT 3 cut(s) 768, 788, 854
SsiI CCGC 8 cut(s) 62, 65, 74, 89, 213, 314, 453, 456
SspI AATATT 1 cut(s) 863
SspMI CTAG 3 cut(s) 203, 573, 678
SstI GAGCTC 1 cut(s) 121
StyD4I CCNGG 4 cut(s) 84, 228, 309, 333
StyI CCWWGG 2 cut(s) 6, 45
TaaI ACNGT 3 cut(s) 166, 175, 541
TaiI ACGT 1 cut(s) 162
TaqI TCGA 1 cut(s) 81
TasI AATT 3 cut(s) 768, 788, 854
TatI WGTACW 1 cut(s) 369
TauI GCSGC 3 cut(s) 67, 76, 456
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 6 cut(s) 178, 286, 559, 609, 661, 667
TseFI GTSAC 2 cut(s) 299, 316
TseI GCWGC 3 cut(s) 503, 764, 773
Tsp45I GTSAC 2 cut(s) 299, 316
TspDTI ATGAA 2 cut(s) 616, 745
TspRI CASTG 6 cut(s) 178, 286, 559, 609, 661, 667
Van91I CCANNNNNTGG 1 cut(s) 656
VpaK11BI GGWCC 2 cut(s) 689, 749
XapI RAATTY 1 cut(s) 854
XmnI GAANNNNTTC 1 cut(s) 864
XspI CTAG 3 cut(s) 203, 573, 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.