Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003494

Physical Location & Seq

Genomic Coordinates Forward (+)

20301759 .. 20304309

Gene Structure 2551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G54820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGACGAAGGAAGTGGTTGGTGATAAGAGATCTTTCTCCGGGAAAGACTATCAAGACCCACCACCTGAACCTCTATTCGACGCTACTGAGCTTGGGAAGTGGTCTTTCTACAGAGCTCTCATCGCTGAGTTCATAGCCACTCTCCTTTTCCTCTATGTCACTATTATGACTGTCATCGGTTACAAGAGCCAGACCGATCCAGCCCTGAATCCTGACCAGTGTACAGGCGTTGGCGTCCTTGGTATCGCATGGGCCTTTGGTGGCATGATCTTCATCCTCGTCTACTGCACCGCCGGCATCTCTGGTGGGCATATTAATCCGGCAGTGACTTTTGGGCTGTTGTTGGCTCGGAAAGTGACGTTGGTGAGAGCAGTGATGTACATGGTGGCTCAGTGCCTCGGTGCCATTTGTGGTGTGGCTTTGGTCAAGGCCTTCCAGTCTGCTTACTTCACCCGCTACGGTGGTGGCGCAAATGGTCTCTCTGACGGTTACAGCATCGGCACCGGTGTTGCAGCCGAGATCATTGGTACATTCGTCTTAGTCTACACCGTCTTCTCTGCCACTGATCCCAAGAGGAGTGCGCGTGACTCTCACGTTCCTGTATTGGCTCCATTGCCAATTGGATTTGCAGTGTTCATCGTTCACTTAGCTACAATCCCAATCACGGGCACTGGTATCAACCCTGCAAGAAGTCTCGGAGCTGCAATCATCTACAACAAGGACAAAGCTTGGGACCATCATTGGATATTCTGGGTGGGTCCGTTTGCTGGTGCAGCCATCGCAGCTTTCTACCATCAGTTTGTGTTGAGGGCTGGTGCGATTAAGGCGCTCGGGTCTTTCAGGAGCCAGCCTCACGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005215 GO:0005372 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006833 GO:0006855 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0015250 GO:0015267 GO:0015318 GO:0015893 GO:0016020 GO:0016021 GO:0019899 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0031625 GO:0033993 GO:0034220 GO:0042044 GO:0042221 GO:0042493 GO:0042891 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044389 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071944 GO:0080170 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

286

Amino Acids

30.59

Weight (kDa)

8.99

Isoelectric Point (pI)

33.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	31 - 265	5.8e-83	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39010 AT2G39010 AT3G54820
fragaria_vesca	FvH4_3g32260 FvH4_7g19490 FvH4_7g19490 FvH4_7g19490 FvH4_7g19490
malus_domestica	MD01G1108500.v1.1 MD03G1117900.v1.1 MD07G1174700.v1.1 MD11G1136200.v1.1
prunus_persica	Prupe.2G213600_v2.0.a1 Prupe.6G101600_v2.0.a1
pyrus_communis	pycom01g13550 pycom07g16910 pycom11g11280
rosa_chinensis	RchiOBHm_Chr1g0363361 RchiOBHm_Chr5g0059051
rosa_laevigata	RLG00000027572 RLG00000035277
rosa_multiflora	Rmu_sc0001297.1_g000001 Rmu_sc0002983.1_g000042
rosa_roxburghii	Rroxscaffold_1G00021350 Rroxscaffold_4G00293230
rosa_rugosa	Rorug01G0306500 Rorug05G0320100
rosa_samantha	Rh1AG315400 Rh1BG278600 Rh1CG295100 Rh1DG309700 Rh5BG397000 Rh5DG413100
rosa_wichuraiana	Rw1G027940 Rw5G036290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	401, 500
AccI	GTMKAC	2 cut(s)	282, 543
AccII	CGCG	1 cut(s)	583
AciI	CCGC	2 cut(s)	291, 454
AclWI	GGATC	2 cut(s)	191, 560
AcyI	GRCGYC	1 cut(s)	234
AfaI	GTAC	3 cut(s)	223, 380, 529
AfiI	CCNNNNNNNGG	3 cut(s)	664, 665, 767
AgeI	ACCGGT	1 cut(s)	503
AjuI	GAANNNNNNNTTGG	2 cut(s)	344, 376
AluBI	AGCT	6 cut(s)	91, 116, 650, 701, 728, 785
AluI	AGCT	6 cut(s)	91, 116, 650, 701, 728, 785
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	2 cut(s)	482, 698
AlwI	GGATC	2 cut(s)	191, 560
Ama87I	CYCGRG	1 cut(s)	830
AoxI	GGCC	2 cut(s)	252, 429
ApeKI	GCWGC	4 cut(s)	512, 701, 773, 782
AseI	ATTAAT	1 cut(s)	315
AsiGI	ACCGGT	1 cut(s)	503
AspLEI	GCGC	3 cut(s)	470, 583, 829
AspS9I	GGNCC	3 cut(s)	252, 733, 758
AsuC2I	CCSGG	1 cut(s)	40
AsuHPI	GGTGA	3 cut(s)	32, 376, 442
AvaI	CYCGRG	1 cut(s)	830
AvaII	GGWCC	2 cut(s)	733, 758
BaeGI	GKGCMC	1 cut(s)	671
BaeI	ACNNNNGTAYC	2 cut(s)	519, 552
BanI	GGYRCC	2 cut(s)	401, 500
BanII	GRGCYC	1 cut(s)	118
BbsI	GAAGAC	1 cut(s)	544
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	4 cut(s)	524, 688, 785, 794
BccI	CCATC	3 cut(s)	744, 785, 801
BcnI	CCSGG	1 cut(s)	40
BcoDI	GTCTC	2 cut(s)	482, 698
BfmI	CTRYAG	1 cut(s)	109
BfoI	RGCGCY	1 cut(s)	830
BglII	AGATCT	1 cut(s)	29
BisI	GCNGC	4 cut(s)	513, 702, 774, 783
BlsI	GCNGC	4 cut(s)	514, 703, 775, 784
Bme1390I	CCNGG	1 cut(s)	40
Bme18I	GGWCC	2 cut(s)	733, 758
BmeT110I	CYCGRG	1 cut(s)	830
BmgT120I	GGNCC	3 cut(s)	252, 733, 758
BmiI	GGNNCC	6 cut(s)	403, 502, 609, 734, 759, 845
BmrFI	CCNGG	1 cut(s)	40
BmsI	GCATC	2 cut(s)	306, 504
BpiI	GAAGAC	1 cut(s)	544
BplI	GAGNNNNNCTC	1 cut(s)	835
BpuMI	CCSGG	1 cut(s)	40
BsaBI	GATNNNNATC	1 cut(s)	272
BsaHI	GRCGYC	1 cut(s)	234
BsaI	GGTCTC	1 cut(s)	482
BsaJI	CCNNGG	2 cut(s)	238, 397
BsaWI	WCCGGW	1 cut(s)	503
BsaXI	ACNNNNNCTCC	2 cut(s)	568, 598
Bsc4I	CCNNNNNNNGG	3 cut(s)	664, 665, 767
Bse118I	RCCGGY	2 cut(s)	293, 503
Bse1I	ACTGG	3 cut(s)	217, 436, 676
Bse3DI	GCAATG	1 cut(s)	611
Bse8I	GATNNNNATC	1 cut(s)	272
BseDI	CCNNGG	2 cut(s)	238, 397
BseGI	GGATG	1 cut(s)	273
BseJI	GATNNNNATC	1 cut(s)	272
BseLI	CCNNNNNNNGG	3 cut(s)	664, 665, 767
BseMI	GCAATG	1 cut(s)	611
BseMII	CTCAG	3 cut(s)	78, 117, 404
BseNI	ACTGG	3 cut(s)	217, 436, 676
BseRI	GAGGAG	1 cut(s)	589
BseSI	GKGCMC	1 cut(s)	671
BseXI	GCAGC	4 cut(s)	524, 688, 785, 794
BsgI	GTGCAG	2 cut(s)	271, 792
Bsh1236I	CGCG	1 cut(s)	583
BshFI	GGCC	2 cut(s)	254, 431
BshNI	GGYRCC	2 cut(s)	401, 500
BshTI	ACCGGT	1 cut(s)	503
BsiHKAI	GWGCWC	1 cut(s)	118
BsiHKCI	CYCGRG	1 cut(s)	830
BsiSI	CCGG	4 cut(s)	39, 294, 320, 504
BslFI	GGGAC	1 cut(s)	746
BslI	CCNNNNNNNGG	3 cut(s)	664, 665, 767
BsmAI	GTCTC	2 cut(s)	482, 698
BsmFI	GGGAC	1 cut(s)	746
BsnI	GGCC	2 cut(s)	254, 431
Bso31I	GGTCTC	1 cut(s)	482
BsoBI	CYCGRG	1 cut(s)	830
Bsp1286I	GDGCHC	2 cut(s)	118, 671
Bsp1407I	TGTACA	2 cut(s)	221, 378
Bsp143I	GATC	5 cut(s)	29, 196, 267, 519, 565
BspACI	CCGC	2 cut(s)	291, 454
BspANI	GGCC	2 cut(s)	254, 431
BspCNI	CTCAG	3 cut(s)	79, 118, 403
BspFNI	CGCG	1 cut(s)	583
BspLI	GGNNCC	6 cut(s)	403, 502, 609, 734, 759, 845
BspPI	GGATC	2 cut(s)	191, 560
BspT107I	GGYRCC	2 cut(s)	401, 500
BspTNI	GGTCTC	1 cut(s)	482
BsrDI	GCAATG	1 cut(s)	611
BsrFI	RCCGGY	2 cut(s)	293, 503
BsrGI	TGTACA	2 cut(s)	221, 378
BsrI	ACTGG	3 cut(s)	217, 436, 676
BssAI	RCCGGY	2 cut(s)	293, 503
BssECI	CCNNGG	2 cut(s)	238, 397
BssMI	GATC	5 cut(s)	29, 196, 267, 519, 565
BssNI	GRCGYC	1 cut(s)	234
BssT1I	CCWWGG	1 cut(s)	238
Bst4CI	ACNGT	4 cut(s)	172, 461, 488, 550
BstACI	GRCGYC	1 cut(s)	234
BstAUI	TGTACA	2 cut(s)	221, 378
BstC8I	GCNNGC	2 cut(s)	295, 848
BstDEI	CTNAG	5 cut(s)	87, 126, 390, 538, 646
BstF5I	GGATG	1 cut(s)	273
BstFNI	CGCG	1 cut(s)	583
BstH2I	RGCGCY	1 cut(s)	830
BstHHI	GCGC	3 cut(s)	470, 583, 829
BstKTI	GATC	5 cut(s)	32, 199, 270, 522, 568
BstMAI	GTCTC	2 cut(s)	482, 698
BstMBI	GATC	5 cut(s)	29, 196, 267, 519, 565
BstMWI	GCNNNNNNNGC	6 cut(s)	122, 294, 773, 779, 782, 824
BstSCI	CCNGG	1 cut(s)	38
BstSFI	CTRYAG	1 cut(s)	109
BstSLI	GKGCMC	1 cut(s)	671
BstUI	CGCG	1 cut(s)	583
BstV1I	GCAGC	4 cut(s)	524, 688, 785, 794
BstV2I	GAAGAC	1 cut(s)	544
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
BsuRI	GGCC	2 cut(s)	254, 431
BtgZI	GCGATG	2 cut(s)	106, 763
BtsCI	GGATG	1 cut(s)	273
BtsI	GCAGTG	3 cut(s)	330, 378, 636
BtsIMutI	CAGTG	7 cut(s)	224, 330, 378, 398, 561, 636, 669
Cac8I	GCNNGC	2 cut(s)	295, 848
CfoI	GCGC	3 cut(s)	470, 583, 829
Cfr10I	RCCGGY	2 cut(s)	293, 503
Cfr13I	GGNCC	3 cut(s)	252, 733, 758
CseI	GACGC	2 cut(s)	89, 223
Csp6I	GTAC	3 cut(s)	222, 379, 528
CspAI	ACCGGT	1 cut(s)	503
CviAII	CATG	3 cut(s)	249, 265, 382
CviQI	GTAC	3 cut(s)	222, 379, 528
DdeI	CTNAG	5 cut(s)	87, 126, 390, 538, 646
DpnI	GATC	5 cut(s)	31, 198, 269, 521, 567
DpnII	GATC	5 cut(s)	29, 196, 267, 519, 565
Ecl136II	GAGCTC	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	238
Eco147I	AGGCCT	1 cut(s)	431
Eco24I	GRGCYC	1 cut(s)	118
Eco31I	GGTCTC	1 cut(s)	482
Eco47I	GGWCC	2 cut(s)	733, 758
Eco53kI	GAGCTC	1 cut(s)	116
Eco88I	CYCGRG	1 cut(s)	830
EcoICRI	GAGCTC	1 cut(s)	116
EcoT14I	CCWWGG	1 cut(s)	238
EcoT38I	GRGCYC	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	238
FaeI	CATG	3 cut(s)	252, 268, 385
FaiI	YATR	7 cut(s)	134, 156, 167, 250, 266, 312, 383
FaqI	GGGAC	1 cut(s)	746
FatI	CATG	3 cut(s)	248, 264, 381
FauI	CCCGC	1 cut(s)	461
FblI	GTMKAC	2 cut(s)	282, 543
Fnu4HI	GCNGC	4 cut(s)	513, 702, 774, 783
FokI	GGATG	1 cut(s)	260
FriOI	GRGCYC	1 cut(s)	118
Fsp4HI	GCNGC	4 cut(s)	513, 702, 774, 783
GlaI	GCGC	3 cut(s)	469, 582, 828
GluI	GCNGC	4 cut(s)	513, 702, 774, 783
HaeII	RGCGCY	1 cut(s)	830
HaeIII	GGCC	2 cut(s)	254, 431
HapII	CCGG	4 cut(s)	39, 294, 320, 504
HgaI	GACGC	2 cut(s)	89, 223
HhaI	GCGC	3 cut(s)	470, 583, 829
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	3 cut(s)	252, 268, 385
Hin6I	GCGC	3 cut(s)	468, 581, 827
HinP1I	GCGC	3 cut(s)	468, 581, 827
HindIII	AAGCTT	1 cut(s)	726
HinfI	GANTC	2 cut(s)	208, 587
HpaII	CCGG	4 cut(s)	39, 294, 320, 504
HphI	GGTGA	3 cut(s)	32, 376, 442
Hpy166II	GTNNAC	4 cut(s)	222, 283, 544, 643
Hpy188I	TCNGA	3 cut(s)	351, 484, 698
Hpy188III	TCNNGA	3 cut(s)	53, 212, 841
Hpy8I	GTNNAC	4 cut(s)	222, 283, 544, 643
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	1 cut(s)	442
HpyCH4III	ACNGT	4 cut(s)	172, 461, 488, 550
HpyCH4IV	ACGT	3 cut(s)	359, 594, 855
HpyCH4V	TGCA	6 cut(s)	288, 512, 629, 686, 704, 773
HpyF10VI	GCNNNNNNNGC	6 cut(s)	122, 294, 773, 779, 782, 824
HpyF3I	CTNAG	5 cut(s)	87, 126, 390, 538, 646
HpySE526I	ACGT	3 cut(s)	359, 594, 855
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	3 cut(s)	252, 268, 385
HspAI	GCGC	3 cut(s)	468, 581, 827
KroI	GCCGGC	1 cut(s)	293
KroNI	GCCGGC	1 cut(s)	295
Kzo9I	GATC	5 cut(s)	29, 196, 267, 519, 565
LmnI	GCTCC	3 cut(s)	613, 698, 843
Lsp1109I	GCAGC	4 cut(s)	524, 688, 785, 794
LweI	GCATC	2 cut(s)	306, 504
MaeII	ACGT	3 cut(s)	359, 594, 855
MaeIII	GTNAC	6 cut(s)	157, 179, 325, 355, 488, 584
MalI	GATC	5 cut(s)	31, 198, 269, 521, 567
MboI	GATC	5 cut(s)	29, 196, 267, 519, 565
MboII	GAAGA	2 cut(s)	262, 544
MfeI	CAATTG	1 cut(s)	618
MflI	RGATCY	1 cut(s)	29
MhlI	GDGCHC	2 cut(s)	118, 671
MluCI	AATT	1 cut(s)	618
MlyI	GAGTC	1 cut(s)	581
MnlI	CCTC	7 cut(s)	81, 161, 287, 407, 567, 801, 861
MroNI	GCCGGC	1 cut(s)	293
MseI	TTAA	3 cut(s)	315, 822, 859
MslI	CAYNNNNRTG	1 cut(s)	164
MspI	CCGG	4 cut(s)	39, 294, 320, 504
MspR9I	CCNGG	1 cut(s)	40
MunI	CAATTG	1 cut(s)	618
MvnI	CGCG	1 cut(s)	583
MwoI	GCNNNNNNNGC	6 cut(s)	122, 294, 773, 779, 782, 824
NaeI	GCCGGC	1 cut(s)	295
NciI	CCSGG	1 cut(s)	40
NdeII	GATC	5 cut(s)	29, 196, 267, 519, 565
NgoMIV	GCCGGC	1 cut(s)	293
NlaIII	CATG	3 cut(s)	252, 268, 385
NlaIV	GGNNCC	6 cut(s)	403, 502, 609, 734, 759, 845
NmeAIII	GCCGAG	1 cut(s)	541
NmuCI	GTSAC	4 cut(s)	157, 325, 355, 584
PceI	AGGCCT	1 cut(s)	431
PdiI	GCCGGC	1 cut(s)	295
PfeI	GAWTC	1 cut(s)	208
PfoI	TCCNGGA	1 cut(s)	38
PinAI	ACCGGT	1 cut(s)	503
PkrI	GCNGC	4 cut(s)	514, 703, 775, 784
PleI	GAGTC	1 cut(s)	581
PpsI	GAGTC	1 cut(s)	581
PshBI	ATTAAT	1 cut(s)	315
Psp124BI	GAGCTC	1 cut(s)	118
PspN4I	GGNNCC	6 cut(s)	403, 502, 609, 734, 759, 845
PspPI	GGNCC	3 cut(s)	252, 733, 758
PsuI	RGATCY	1 cut(s)	29
RsaI	GTAC	3 cut(s)	223, 380, 529
RsaNI	GTAC	3 cut(s)	222, 379, 528
RseI	CAYNNNNRTG	1 cut(s)	164
SacI	GAGCTC	1 cut(s)	118
SaqAI	TTAA	3 cut(s)	315, 822, 859
SatI	GCNGC	4 cut(s)	513, 702, 774, 783
Sau3AI	GATC	5 cut(s)	29, 196, 267, 519, 565
Sau96I	GGNCC	3 cut(s)	252, 733, 758
SchI	GAGTC	1 cut(s)	581
ScrFI	CCNGG	1 cut(s)	40
SduI	GDGCHC	2 cut(s)	118, 671
SfaNI	GCATC	2 cut(s)	306, 504
SfcI	CTRYAG	1 cut(s)	109
SgrAI	CRCCGGYG	1 cut(s)	503
SinI	GGWCC	2 cut(s)	733, 758
SmiMI	CAYNNNNRTG	1 cut(s)	164
Sse9I	AATT	1 cut(s)	618
SseBI	AGGCCT	1 cut(s)	431
SsiI	CCGC	2 cut(s)	291, 454
SstI	GAGCTC	1 cut(s)	118
StuI	AGGCCT	1 cut(s)	431
StyD4I	CCNGG	1 cut(s)	38
StyI	CCWWGG	1 cut(s)	238
TaaI	ACNGT	4 cut(s)	172, 461, 488, 550
TaiI	ACGT	3 cut(s)	362, 597, 858
TaqI	TCGA	1 cut(s)	78
TaqII	GACCGA	1 cut(s)	209
TasI	AATT	1 cut(s)	618
TatI	WGTACW	2 cut(s)	221, 378
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	3 cut(s)	315, 822, 859
Tru9I	TTAA	3 cut(s)	315, 822, 859
TscAI	CASTG	7 cut(s)	224, 330, 378, 398, 568, 636, 676
TseFI	GTSAC	4 cut(s)	157, 325, 355, 584
TseI	GCWGC	4 cut(s)	512, 701, 773, 782
Tsp45I	GTSAC	4 cut(s)	157, 325, 355, 584
TspDTI	ATGAA	3 cut(s)	121, 262, 625
TspGWI	ACGGA	1 cut(s)	750
TspRI	CASTG	7 cut(s)	224, 330, 378, 398, 568, 636, 676
VpaK11BI	GGWCC	2 cut(s)	733, 758
VspI	ATTAAT	1 cut(s)	315
XcmI	CCANNNNNNNNNTGG	1 cut(s)	412
XmiI	GTMKAC	2 cut(s)	282, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.