Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003494

Physical Location & Seq

Genomic Coordinates Forward (+)

54817207 .. 54821117

Gene Structure 3911 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG315400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCGAAGGACGTTGAAGTTGCCGAGCGGGGTTCCTTCTCAGCCAAGGACTACCATGACCCGCCTCCAGCTCCGCTCTTCGACTCGGTTGAGCTGACCAAATGGTCGTTCTACAGAGCTGTTATAGCTGAGTTCATAGCAACCCTTCTGTTTCTCTATATCACTGTGCTGACTGTGATCGGGTACAAGTCCCAAAGCGAGACCGACGACTGCGGCGGAGTTGGGATTTTGGGTATTGCCTGGGCCTTTGGAGGCATGATCTTCATCCTCGTTTACTGCACTGCTGGAATCTCAGGGGGTCACATTAACCCTGCTGTGACTTTTGGGCTGTTCTTGGCCCGGAAGGTGTCGCTGGTCCGAGCTGTGATGTACATAGTGGCTCAGAGTTTGGGTGCCATAGCCGGAGTTGGGCTAGTCAAGGCTTTCCAGAGTTCTTACTATAAAAAGTTTGGCGGTGGAGCCAATACGCTTGCTGATGGGTACAGCACTGGAGTTGGATTGTCTGCTGAGATTATTGGGACCTTTGTGCTGGTTTACACTGTTTTCTCTGCCACTGACCCAAAGAGGAGTGCTAGAGATTCCCATGTTCCGGTACAAAGCTTAAACCTTTTAGCTACTTTTATCATTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005215 GO:0005372 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006833 GO:0006855 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0015250 GO:0015267 GO:0015318 GO:0015893 GO:0016020 GO:0016021 GO:0019899 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0031625 GO:0033993 GO:0034220 GO:0042044 GO:0042221 GO:0042493 GO:0042891 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044389 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071944 GO:0080170 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

210

Amino Acids

22.39

Weight (kDa)

6.89

Isoelectric Point (pI)

39.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	31 - 198	9.8e-55	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39010 AT2G39010 AT3G54820
fragaria_vesca	FvH4_3g32260 FvH4_7g19490 FvH4_7g19490 FvH4_7g19490 FvH4_7g19490
malus_domestica	MD01G1108500.v1.1 MD03G1117900.v1.1 MD07G1174700.v1.1 MD11G1136200.v1.1
prunus_persica	Prupe.2G213600_v2.0.a1 Prupe.6G101600_v2.0.a1
pyrus_communis	pycom01g13550 pycom07g16910 pycom11g11280
rosa_chinensis	RchiOBHm_Chr1g0363361 RchiOBHm_Chr5g0059051
rosa_laevigata	RLG00000027572 RLG00000035277
rosa_multiflora	Rmu_sc0001297.1_g000001 Rmu_sc0002983.1_g000042
rosa_roxburghii	Rroxscaffold_1G00021350 Rroxscaffold_4G00293230
rosa_rugosa	Rorug01G0306500 Rorug05G0320100
rosa_samantha	Rh1AG315400 Rh1BG278600 Rh1CG295100 Rh1DG309700 Rh5BG397000 Rh5DG413100
rosa_wichuraiana	Rw1G027940 Rw5G036290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	103
AccB1I	GGYRCC	1 cut(s)	392
AccBSI	CCGCTC	2 cut(s)	28, 76
AciI	CCGC	6 cut(s)	28, 62, 74, 213, 216, 453
AfaI	GTAC	4 cut(s)	185, 371, 482, 594
AfiI	CCNNNNNNNGG	2 cut(s)	408, 589
AgsI	TTSAA	1 cut(s)	17
AjnI	CCWGG	1 cut(s)	239
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	7 cut(s)	71, 94, 119, 128, 362, 600, 614
AluI	AGCT	7 cut(s)	71, 94, 119, 128, 362, 600, 614
Alw26I	GTCTC	1 cut(s)	194
AoxI	GGCC	2 cut(s)	243, 336
AspS9I	GGNCC	4 cut(s)	243, 337, 355, 519
AsuC2I	CCSGG	1 cut(s)	340
AvaII	GGWCC	2 cut(s)	355, 519
BanI	GGYRCC	1 cut(s)	392
BccI	CCATC	1 cut(s)	470
BciT130I	CCWGG	1 cut(s)	241
BcnI	CCSGG	1 cut(s)	340
BcoDI	GTCTC	1 cut(s)	194
BfaI	CTAG	2 cut(s)	413, 573
BfmI	CTRYAG	1 cut(s)	112
BisI	GCNGC	1 cut(s)	214
BlsI	GCNGC	1 cut(s)	215
Bme1390I	CCNGG	2 cut(s)	241, 340
Bme18I	GGWCC	2 cut(s)	355, 519
BmgT120I	GGNCC	4 cut(s)	243, 337, 355, 519
BmiI	GGNNCC	4 cut(s)	34, 394, 460, 520
BmrFI	CCNGG	2 cut(s)	241, 340
BpmI	CTGGAG	2 cut(s)	51, 510
BpuMI	CCSGG	1 cut(s)	340
BsaBI	GATNNNNATC	1 cut(s)	263
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	2 cut(s)	45, 240
BsaWI	WCCGGW	1 cut(s)	589
Bsc4I	CCNNNNNNNGG	2 cut(s)	408, 589
Bse1I	ACTGG	1 cut(s)	493
Bse8I	GATNNNNATC	1 cut(s)	263
BseBI	CCWGG	1 cut(s)	241
BseDI	CCNNGG	2 cut(s)	45, 240
BseGI	GGATG	1 cut(s)	264
BseJI	GATNNNNATC	1 cut(s)	263
BseLI	CCNNNNNNNGG	2 cut(s)	408, 589
BseMII	CTCAG	5 cut(s)	54, 120, 306, 395, 498
BseNI	ACTGG	1 cut(s)	493
BseRI	GAGGAG	1 cut(s)	580
BsgI	GTGCAG	1 cut(s)	262
BshFI	GGCC	2 cut(s)	245, 338
BshNI	GGYRCC	1 cut(s)	392
BsiSI	CCGG	3 cut(s)	340, 402, 590
BslFI	GGGAC	2 cut(s)	175, 532
BslI	CCNNNNNNNGG	2 cut(s)	408, 589
BsmAI	GTCTC	1 cut(s)	194
BsmFI	GGGAC	2 cut(s)	175, 532
BsnI	GGCC	2 cut(s)	245, 338
Bso31I	GGTCTC	1 cut(s)	194
Bsp1407I	TGTACA	1 cut(s)	369
Bsp143I	GATC	2 cut(s)	177, 258
BspACI	CCGC	6 cut(s)	28, 62, 74, 213, 216, 453
BspANI	GGCC	2 cut(s)	245, 338
BspCNI	CTCAG	5 cut(s)	53, 121, 305, 394, 499
BspLI	GGNNCC	4 cut(s)	34, 394, 460, 520
BspQI	GCTCTTC	1 cut(s)	83
BspT107I	GGYRCC	1 cut(s)	392
BspTNI	GGTCTC	1 cut(s)	194
BsrBI	CCGCTC	2 cut(s)	28, 76
BsrGI	TGTACA	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	493
BssECI	CCNNGG	2 cut(s)	45, 240
BssMI	GATC	2 cut(s)	177, 258
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	1 cut(s)	241
Bst4CI	ACNGT	3 cut(s)	166, 175, 541
Bst6I	CTCTTC	1 cut(s)	83
BstAUI	TGTACA	1 cut(s)	369
BstC8I	GCNNGC	1 cut(s)	471
BstDEI	CTNAG	5 cut(s)	40, 129, 292, 381, 507
BstF5I	GGATG	1 cut(s)	264
BstKTI	GATC	2 cut(s)	180, 261
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	2 cut(s)	177, 258
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstNI	CCWGG	1 cut(s)	241
BstSCI	CCNGG	2 cut(s)	239, 338
BstSFI	CTRYAG	1 cut(s)	112
BsuRI	GGCC	2 cut(s)	245, 338
BtsCI	GGATG	1 cut(s)	264
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	5 cut(s)	162, 279, 486, 537, 552
Cac8I	GCNNGC	1 cut(s)	471
Cfr13I	GGNCC	4 cut(s)	243, 337, 355, 519
Csp6I	GTAC	4 cut(s)	184, 370, 481, 593
CviAII	CATG	3 cut(s)	56, 256, 584
CviQI	GTAC	4 cut(s)	184, 370, 481, 593
DdeI	CTNAG	5 cut(s)	40, 129, 292, 381, 507
DpnI	GATC	2 cut(s)	179, 260
DpnII	GATC	2 cut(s)	177, 258
DrdI	GACNNNNNNGTC	1 cut(s)	103
DseDI	GACNNNNNNGTC	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
EciI	GGCGGA	1 cut(s)	231
Eco130I	CCWWGG	1 cut(s)	45
Eco31I	GGTCTC	1 cut(s)	194
Eco47I	GGWCC	2 cut(s)	355, 519
EcoO109I	RGGNCCY	1 cut(s)	519
EcoRII	CCWGG	1 cut(s)	239
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	3 cut(s)	59, 259, 587
FaiI	YATR	9 cut(s)	57, 125, 137, 159, 257, 374, 398, 441, 585
FaqI	GGGAC	2 cut(s)	175, 532
FatI	CATG	3 cut(s)	55, 255, 583
FauI	CCCGC	2 cut(s)	21, 69
Fnu4HI	GCNGC	1 cut(s)	214
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	1 cut(s)	214
FspBI	CTAG	2 cut(s)	413, 573
GluI	GCNGC	1 cut(s)	214
GsuI	CTGGAG	2 cut(s)	51, 510
HaeIII	GGCC	2 cut(s)	245, 338
HapII	CCGG	3 cut(s)	340, 402, 590
Hin1II	CATG	3 cut(s)	59, 259, 587
HindIII	AAGCTT	1 cut(s)	598
HinfI	GANTC	3 cut(s)	83, 288, 578
HpaII	CCGG	3 cut(s)	340, 402, 590
Hpy166II	GTNNAC	2 cut(s)	274, 535
Hpy188I	TCNGA	2 cut(s)	359, 384
Hpy188III	TCNNGA	1 cut(s)	427
Hpy8I	GTNNAC	2 cut(s)	274, 535
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	3 cut(s)	46, 155, 337
HpyCH4III	ACNGT	3 cut(s)	166, 175, 541
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	1 cut(s)	279
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	5 cut(s)	40, 129, 292, 381, 507
HpySE526I	ACGT	1 cut(s)	12
Hsp92II	CATG	3 cut(s)	59, 259, 587
Kzo9I	GATC	2 cut(s)	177, 258
LguI	GCTCTTC	1 cut(s)	83
LmnI	GCTCC	2 cut(s)	76, 458
MaeI	CTAG	2 cut(s)	413, 573
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	2 cut(s)	299, 316
MalI	GATC	2 cut(s)	179, 260
MbiI	CCGCTC	2 cut(s)	28, 76
MboI	GATC	2 cut(s)	177, 258
MboII	GAAGA	2 cut(s)	70, 253
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	1 cut(s)	475
MnlI	CCTC	4 cut(s)	75, 245, 278, 558
MseI	TTAA	2 cut(s)	306, 602
MspI	CCGG	3 cut(s)	340, 402, 590
MspR9I	CCNGG	2 cut(s)	241, 340
MvaI	CCWGG	1 cut(s)	241
MwoI	GCNNNNNNNGC	1 cut(s)	125
NciI	CCSGG	1 cut(s)	340
NdeII	GATC	2 cut(s)	177, 258
NlaIII	CATG	3 cut(s)	59, 259, 587
NlaIV	GGNNCC	4 cut(s)	34, 394, 460, 520
NmeAIII	GCCGAG	1 cut(s)	49
NmuCI	GTSAC	2 cut(s)	299, 316
PciSI	GCTCTTC	1 cut(s)	83
PfeI	GAWTC	2 cut(s)	288, 578
PkrI	GCNGC	1 cut(s)	215
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
PpuMI	RGGWCCY	1 cut(s)	519
Psp5II	RGGWCCY	1 cut(s)	519
Psp6I	CCWGG	1 cut(s)	239
PspGI	CCWGG	1 cut(s)	239
PspN4I	GGNNCC	4 cut(s)	34, 394, 460, 520
PspPI	GGNCC	4 cut(s)	243, 337, 355, 519
PspPPI	RGGWCCY	1 cut(s)	519
RsaI	GTAC	4 cut(s)	185, 371, 482, 594
RsaNI	GTAC	4 cut(s)	184, 370, 481, 593
SapI	GCTCTTC	1 cut(s)	83
SaqAI	TTAA	2 cut(s)	306, 602
SatI	GCNGC	1 cut(s)	214
Sau3AI	GATC	2 cut(s)	177, 258
Sau96I	GGNCC	4 cut(s)	243, 337, 355, 519
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	2 cut(s)	241, 340
SfcI	CTRYAG	1 cut(s)	112
SinI	GGWCC	2 cut(s)	355, 519
SsiI	CCGC	6 cut(s)	28, 62, 74, 213, 216, 453
SspMI	CTAG	2 cut(s)	413, 573
StyD4I	CCNGG	2 cut(s)	239, 338
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	3 cut(s)	166, 175, 541
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	1 cut(s)	81
TaqII	GACCGA	1 cut(s)	218
TatI	WGTACW	1 cut(s)	369
TauI	GCSGC	1 cut(s)	216
TfiI	GAWTC	2 cut(s)	288, 578
Tru1I	TTAA	2 cut(s)	306, 602
Tru9I	TTAA	2 cut(s)	306, 602
TscAI	CASTG	5 cut(s)	169, 286, 493, 544, 559
TseFI	GTSAC	2 cut(s)	299, 316
Tsp45I	GTSAC	2 cut(s)	299, 316
TspDTI	ATGAA	3 cut(s)	124, 253, 617
TspRI	CASTG	5 cut(s)	169, 286, 493, 544, 559
VpaK11BI	GGWCC	2 cut(s)	355, 519
XspI	CTAG	2 cut(s)	413, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.