Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002983.1

Orthogroup ID

OG0003494

Physical Location & Seq

Genomic Coordinates Reverse (-)

221841 .. 223575

Gene Structure 1735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002983.1_g000042.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atggcgaaagatgttgagggagctgagcacagtgagtttgcggcaaaggactaccatgaccctcctcctactcctctttttgatgccgaggagctgaccaaatggtcattttacagagctctcatcgcagagttcattgctacgcttctgttcctttacatcacggttttgactgtgattgggtacaaagaacagagcaaactcgaccagtgcggcggtgttgggattctcggtatcgcttgggccttcggtggcatgatcttcgtccttgtttactgcaccgccggtatctccggaggacacatcaacccagctgtgactttcgggctcttcttggcacgcaaggtgtcgctcctcagggctgtgctctacatagttgcacagtgtctgggtgctatcagtggtgtagggttggtcaaggcctggcagaagaccttgtacgtcgagcatggtggtggagccaatgagttgtcccctgggtacagcaagggcatcggattggcggctgagatcatcggcacctttgttcttgtatacactgttttctctgccactgaccctaagagaaacgccagagactcccatgttcctgtcttggcaccacttcccattggatttgctgttttcatggttcacttggccaccattcccattactggcactggtatcaaccctgctagaagttttggagctgctgtcatctacaaccaagacaaagcctgggatgaccaatggatgttctgggttggaccgttcattggagctgcaattgctgccttttaccaccaatttgttctgagagcaggagcaattaaggccctagggtctttcaggagcaatgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

281

Amino Acids

30.19

Weight (kDa)

7.05

Isoelectric Point (pI)

29.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39010 AT2G39010 AT3G54820
fragaria_vesca	FvH4_3g32260 FvH4_7g19490 FvH4_7g19490 FvH4_7g19490 FvH4_7g19490
malus_domestica	MD01G1108500.v1.1 MD03G1117900.v1.1 MD07G1174700.v1.1 MD11G1136200.v1.1
prunus_persica	Prupe.2G213600_v2.0.a1 Prupe.6G101600_v2.0.a1
pyrus_communis	pycom01g13550 pycom07g16910 pycom11g11280
rosa_chinensis	RchiOBHm_Chr1g0363361 RchiOBHm_Chr5g0059051
rosa_laevigata	RLG00000027572 RLG00000035277
rosa_multiflora	Rmu_sc0001297.1_g000001 Rmu_sc0002983.1_g000042
rosa_roxburghii	Rroxscaffold_1G00021350 Rroxscaffold_4G00293230
rosa_rugosa	Rorug01G0306500 Rorug05G0320100
rosa_samantha	Rh1AG315400 Rh1BG278600 Rh1CG295100 Rh1DG309700 Rh5BG397000 Rh5DG413100
rosa_wichuraiana	Rw1G027940 Rw5G036290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	103
AccB1I	GGYRCC	2 cut(s)	518, 598
AccI	GTMKAC	1 cut(s)	534
AccIII	TCCGGA	1 cut(s)	293
AciI	CCGC	5 cut(s)	41, 213, 216, 282, 503
AcoI	YGGCCR	1 cut(s)	639
AfaI	GTAC	3 cut(s)	185, 440, 482
AfiI	CCNNNNNNNGG	2 cut(s)	656, 758
AjnI	CCWGG	3 cut(s)	422, 475, 719
AluBI	AGCT	6 cut(s)	23, 94, 119, 314, 692, 764
AluI	AGCT	6 cut(s)	23, 94, 119, 314, 692, 764
Alw21I	GWGCWC	3 cut(s)	30, 121, 369
Alw26I	GTCTC	1 cut(s)	570
AlwNI	CAGNNNCTG	1 cut(s)	388
Aor13HI	TCCGGA	1 cut(s)	293
AoxI	GGCC	4 cut(s)	243, 420, 639, 816
ApeKI	GCWGC	3 cut(s)	692, 764, 773
AspA2I	CCTAGG	1 cut(s)	820
AspS9I	GGNCC	3 cut(s)	243, 749, 817
AvaII	GGWCC	1 cut(s)	749
AvrII	CCTAGG	1 cut(s)	820
AxyI	CCTNAGG	1 cut(s)	356
BalI	TGGCCA	1 cut(s)	641
BanI	GGYRCC	2 cut(s)	518, 598
BanII	GRGCYC	2 cut(s)	121, 330
BarI	GAAGNNNNNNTAC	2 cut(s)	422, 454
BbsI	GAAGAC	1 cut(s)	437
Bbv12I	GWGCWC	3 cut(s)	30, 121, 369
BbvI	GCAGC	3 cut(s)	679, 751, 760
BcgI	CGANNNNNNTGC	4 cut(s)	244, 278, 475, 509
BciT130I	CCWGG	3 cut(s)	424, 477, 721
BcoDI	GTCTC	1 cut(s)	570
BfaI	CTAG	2 cut(s)	678, 821
BisI	GCNGC	6 cut(s)	42, 214, 504, 693, 765, 774
BlnI	CCTAGG	1 cut(s)	820
BlpI	GCTNAGC	1 cut(s)	24
BlsI	GCNGC	6 cut(s)	43, 215, 505, 694, 766, 775
Bme1390I	CCNGG	3 cut(s)	424, 477, 721
Bme18I	GGWCC	1 cut(s)	749
BmgT120I	GGNCC	3 cut(s)	243, 749, 817
BmiI	GGNNCC	3 cut(s)	460, 520, 600
BmrFI	CCNGG	3 cut(s)	424, 477, 721
BmsI	GCATC	2 cut(s)	73, 501
BpiI	GAAGAC	1 cut(s)	437
Bpu1102I	GCTNAGC	1 cut(s)	24
BsaJI	CCNNGG	5 cut(s)	87, 475, 476, 720, 820
BsaWI	WCCGGW	1 cut(s)	293
BsaXI	ACNNNNNCTCC	2 cut(s)	681, 711
Bsc4I	CCNNNNNNNGG	2 cut(s)	656, 758
Bse118I	RCCGGY	1 cut(s)	284
Bse1I	ACTGG	3 cut(s)	208, 661, 667
Bse21I	CCTNAGG	1 cut(s)	356
Bse3DI	GCAATG	2 cut(s)	135, 844
BseAI	TCCGGA	1 cut(s)	293
BseBI	CCWGG	3 cut(s)	424, 477, 721
BseDI	CCNNGG	5 cut(s)	87, 475, 476, 720, 820
BseGI	GGATG	2 cut(s)	730, 741
BseLI	CCNNNNNNNGG	2 cut(s)	656, 758
BseMI	GCAATG	2 cut(s)	135, 844
BseMII	CTCAG	4 cut(s)	15, 370, 498, 788
BseNI	ACTGG	3 cut(s)	208, 661, 667
BseRI	GAGGAG	4 cut(s)	54, 63, 104, 344
BseXI	GCAGC	3 cut(s)	679, 751, 760
BseYI	CCCAGC	1 cut(s)	310
BsgI	GTGCAG	1 cut(s)	262
BshFI	GGCC	4 cut(s)	245, 422, 641, 818
BshNI	GGYRCC	2 cut(s)	518, 598
BsiHKAI	GWGCWC	3 cut(s)	30, 121, 369
BsiSI	CCGG	2 cut(s)	285, 294
BslFI	GGGAC	1 cut(s)	457
BslI	CCNNNNNNNGG	2 cut(s)	656, 758
BsmAI	GTCTC	1 cut(s)	570
BsmFI	GGGAC	1 cut(s)	457
BsnI	GGCC	4 cut(s)	245, 422, 641, 818
Bsp1286I	GDGCHC	4 cut(s)	30, 121, 330, 369
Bsp13I	TCCGGA	1 cut(s)	293
Bsp143I	GATC	2 cut(s)	258, 510
Bsp1720I	GCTNAGC	1 cut(s)	24
BspACI	CCGC	5 cut(s)	41, 213, 216, 282, 503
BspANI	GGCC	4 cut(s)	245, 422, 641, 818
BspCNI	CTCAG	4 cut(s)	16, 369, 499, 789
BspEI	TCCGGA	1 cut(s)	293
BspLI	GGNNCC	3 cut(s)	460, 520, 600
BspQI	GCTCTTC	1 cut(s)	335
BspT107I	GGYRCC	2 cut(s)	518, 598
BsrDI	GCAATG	2 cut(s)	135, 844
BsrFI	RCCGGY	1 cut(s)	284
BsrI	ACTGG	3 cut(s)	208, 661, 667
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	5 cut(s)	87, 475, 476, 720, 820
BssMI	GATC	2 cut(s)	258, 510
BssNAI	GTATAC	1 cut(s)	535
BssT1I	CCWWGG	1 cut(s)	820
Bst1107I	GTATAC	1 cut(s)	535
Bst2UI	CCWGG	3 cut(s)	424, 477, 721
Bst4CI	ACNGT	6 cut(s)	32, 166, 175, 384, 541, 753
Bst6I	CTCTTC	1 cut(s)	335
BstAPI	GCANNNNNTGC	1 cut(s)	773
BstC8I	GCNNGC	1 cut(s)	340
BstDEI	CTNAG	5 cut(s)	24, 356, 507, 561, 797
BstF5I	GGATG	2 cut(s)	730, 741
BstKTI	GATC	2 cut(s)	261, 513
BstMAI	GTCTC	1 cut(s)	570
BstMBI	GATC	2 cut(s)	258, 510
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 770, 773, 815
BstNI	CCWGG	3 cut(s)	424, 477, 721
BstSCI	CCNGG	3 cut(s)	422, 475, 719
BstV1I	GCAGC	3 cut(s)	679, 751, 760
BstV2I	GAAGAC	1 cut(s)	437
BstZ17I	GTATAC	1 cut(s)	535
Bsu36I	CCTNAGG	1 cut(s)	356
BsuRI	GGCC	4 cut(s)	245, 422, 641, 818
BtgZI	GCGATG	1 cut(s)	109
BtsCI	GGATG	2 cut(s)	730, 741
BtsIMutI	CAGTG	7 cut(s)	37, 215, 389, 406, 537, 552, 660
Cac8I	GCNNGC	1 cut(s)	340
CaiI	CAGNNNCTG	1 cut(s)	388
Cfr10I	RCCGGY	1 cut(s)	284
Cfr13I	GGNCC	3 cut(s)	243, 749, 817
Csp6I	GTAC	3 cut(s)	184, 439, 481
CviAII	CATG	5 cut(s)	56, 256, 449, 584, 628
CviQI	GTAC	3 cut(s)	184, 439, 481
DdeI	CTNAG	5 cut(s)	24, 356, 507, 561, 797
DpnI	GATC	2 cut(s)	260, 512
DpnII	GATC	2 cut(s)	258, 510
DrdI	GACNNNNNNGTC	1 cut(s)	103
DseDI	GACNNNNNNGTC	1 cut(s)	103
EaeI	YGGCCR	1 cut(s)	639
Eam1104I	CTCTTC	1 cut(s)	335
EarI	CTCTTC	1 cut(s)	335
Ecl136II	GAGCTC	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	820
Eco147I	AGGCCT	1 cut(s)	422
Eco24I	GRGCYC	2 cut(s)	121, 330
Eco47I	GGWCC	1 cut(s)	749
Eco53kI	GAGCTC	1 cut(s)	119
Eco81I	CCTNAGG	1 cut(s)	356
EcoICRI	GAGCTC	1 cut(s)	119
EcoO109I	RGGNCCY	1 cut(s)	817
EcoRII	CCWGG	3 cut(s)	422, 475, 719
EcoT14I	CCWWGG	1 cut(s)	820
EcoT38I	GRGCYC	2 cut(s)	121, 330
ErhI	CCWWGG	1 cut(s)	820
FaeI	CATG	5 cut(s)	59, 259, 452, 587, 631
FaiI	YATR	7 cut(s)	57, 257, 374, 450, 535, 585, 629
FaqI	GGGAC	1 cut(s)	457
FatI	CATG	5 cut(s)	55, 255, 448, 583, 627
FblI	GTMKAC	1 cut(s)	534
Fnu4HI	GCNGC	6 cut(s)	42, 214, 504, 693, 765, 774
FokI	GGATG	2 cut(s)	737, 748
FriOI	GRGCYC	2 cut(s)	121, 330
Fsp4HI	GCNGC	6 cut(s)	42, 214, 504, 693, 765, 774
FspBI	CTAG	2 cut(s)	678, 821
GluI	GCNGC	6 cut(s)	42, 214, 504, 693, 765, 774
GsaI	CCCAGC	1 cut(s)	314
HaeIII	GGCC	4 cut(s)	245, 422, 641, 818
HapII	CCGG	2 cut(s)	285, 294
Hin1II	CATG	5 cut(s)	59, 259, 452, 587, 631
HinfI	GANTC	2 cut(s)	226, 578
HpaII	CCGG	2 cut(s)	285, 294
Hpy166II	GTNNAC	3 cut(s)	274, 535, 634
Hpy188I	TCNGA	2 cut(s)	497, 798
Hpy188III	TCNNGA	2 cut(s)	294, 832
Hpy8I	GTNNAC	3 cut(s)	274, 535, 634
Hpy99I	CGWCG	1 cut(s)	446
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	6 cut(s)	32, 166, 175, 384, 541, 753
HpyCH4IV	ACGT	1 cut(s)	441
HpyCH4V	TGCA	3 cut(s)	279, 380, 767
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 770, 773, 815
HpyF3I	CTNAG	5 cut(s)	24, 356, 507, 561, 797
HpySE526I	ACGT	1 cut(s)	441
Hsp92II	CATG	5 cut(s)	59, 259, 452, 587, 631
Kpn2I	TCCGGA	1 cut(s)	293
Kzo9I	GATC	2 cut(s)	258, 510
LguI	GCTCTTC	1 cut(s)	335
LmnI	GCTCC	8 cut(s)	20, 91, 357, 458, 689, 761, 806, 834
Lsp1109I	GCAGC	3 cut(s)	679, 751, 760
LweI	GCATC	2 cut(s)	73, 501
MaeI	CTAG	2 cut(s)	678, 821
MaeII	ACGT	1 cut(s)	441
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	2 cut(s)	260, 512
MboI	GATC	2 cut(s)	258, 510
MboII	GAAGA	3 cut(s)	253, 322, 442
MfeI	CAATTG	1 cut(s)	768
MhlI	GDGCHC	4 cut(s)	30, 121, 330, 369
MlsI	TGGCCA	1 cut(s)	641
MluCI	AATT	3 cut(s)	768, 788, 810
MluNI	TGGCCA	1 cut(s)	641
MlyI	GAGTC	1 cut(s)	572
MmeI	TCCRAC	1 cut(s)	727
MnlI	CCTC	7 cut(s)	10, 72, 75, 82, 84, 290, 365
Mox20I	TGGCCA	1 cut(s)	641
MroI	TCCGGA	1 cut(s)	293
MscI	TGGCCA	1 cut(s)	641
MseI	TTAA	2 cut(s)	813, 844
MslI	CAYNNNNRTG	1 cut(s)	453
Msp20I	TGGCCA	1 cut(s)	641
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	2 cut(s)	285, 294
MspR9I	CCNGG	3 cut(s)	424, 477, 721
MunI	CAATTG	1 cut(s)	768
MvaI	CCWGG	3 cut(s)	424, 477, 721
MwoI	GCNNNNNNNGC	4 cut(s)	125, 770, 773, 815
NdeII	GATC	2 cut(s)	258, 510
NlaIII	CATG	5 cut(s)	59, 259, 452, 587, 631
NlaIV	GGNNCC	3 cut(s)	460, 520, 600
NmeAIII	GCCGAG	1 cut(s)	112
NmuCI	GTSAC	1 cut(s)	316
PasI	CCCWGGG	1 cut(s)	476
PceI	AGGCCT	1 cut(s)	422
PciSI	GCTCTTC	1 cut(s)	335
PfeI	GAWTC	1 cut(s)	226
PkrI	GCNGC	6 cut(s)	43, 215, 505, 694, 766, 775
PleI	GAGTC	1 cut(s)	572
PpsI	GAGTC	1 cut(s)	572
Psp124BI	GAGCTC	1 cut(s)	121
Psp6I	CCWGG	3 cut(s)	422, 475, 719
PspFI	CCCAGC	1 cut(s)	310
PspGI	CCWGG	3 cut(s)	422, 475, 719
PspN4I	GGNNCC	3 cut(s)	460, 520, 600
PspPI	GGNCC	3 cut(s)	243, 749, 817
PstNI	CAGNNNCTG	1 cut(s)	388
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	3 cut(s)	185, 440, 482
RsaNI	GTAC	3 cut(s)	184, 439, 481
RseI	CAYNNNNRTG	1 cut(s)	453
SacI	GAGCTC	1 cut(s)	121
SapI	GCTCTTC	1 cut(s)	335
SaqAI	TTAA	2 cut(s)	813, 844
SatI	GCNGC	6 cut(s)	42, 214, 504, 693, 765, 774
Sau3AI	GATC	2 cut(s)	258, 510
Sau96I	GGNCC	3 cut(s)	243, 749, 817
SchI	GAGTC	1 cut(s)	572
ScrFI	CCNGG	3 cut(s)	424, 477, 721
SduI	GDGCHC	4 cut(s)	30, 121, 330, 369
SfaNI	GCATC	2 cut(s)	73, 501
SinI	GGWCC	1 cut(s)	749
SmiMI	CAYNNNNRTG	1 cut(s)	453
Sse9I	AATT	3 cut(s)	768, 788, 810
SseBI	AGGCCT	1 cut(s)	422
SsiI	CCGC	5 cut(s)	41, 213, 216, 282, 503
SspMI	CTAG	2 cut(s)	678, 821
SstI	GAGCTC	1 cut(s)	121
StuI	AGGCCT	1 cut(s)	422
StyD4I	CCNGG	3 cut(s)	422, 475, 719
StyI	CCWWGG	1 cut(s)	820
TaaI	ACNGT	6 cut(s)	32, 166, 175, 384, 541, 753
TaiI	ACGT	1 cut(s)	444
TaqI	TCGA	2 cut(s)	204, 444
TasI	AATT	3 cut(s)	768, 788, 810
TauI	GCSGC	3 cut(s)	44, 216, 506
TfiI	GAWTC	1 cut(s)	226
Tru1I	TTAA	2 cut(s)	813, 844
Tru9I	TTAA	2 cut(s)	813, 844
TscAI	CASTG	7 cut(s)	37, 215, 389, 406, 544, 559, 667
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	3 cut(s)	692, 764, 773
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	3 cut(s)	124, 616, 745
TspRI	CASTG	7 cut(s)	37, 215, 389, 406, 544, 559, 667
VpaK11BI	GGWCC	1 cut(s)	749
XmaJI	CCTAGG	1 cut(s)	820
XmiI	GTMKAC	1 cut(s)	534
XspI	CTAG	2 cut(s)	678, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.