Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003494

Physical Location & Seq

Genomic Coordinates Forward (+)

37972123 .. 37975154

Gene Structure 3032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0320100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGATCCTCTTCCGCAAGAAGTCGACGATTACATCAGAGAGTCGATTGACCACACCCTCGTCCTCCCCGTGTCCGCACAGACTCTCGAATTGAAGAAGCTCCGGTGCTCGGAAACCACGAAGCGACGGCTGCGCGACCAGTACACGGGCGAGGCTTGTATGAACGCTCAGGCTTTGAGGAAGTTTGTGGAGGAGAATCAGAGACTAGCGGCAGAGTGTGTGCATCTGGCAGACCAGAGGGCCAAGGAGGCTGAGTTTCGGGTCGAAGAGTTGGAGGATGAACTGGGACAATTGAGGGAAGAATTGAAGTTTTACAAGAATGAATACGAGACGCTTTCGATTGGTTTAGATTTTAGAATCTTGAGGCCGTCATCTCAAAAAGTTTTGACCCTAGTTGCTGAGTTGAAAACACTTCAGAAGAATAATGAAACACTTAAGAAGGATAAAGAACATCTAAGGATCAATCTTCTTTCTGCTGAAGAGGAGGTCAAATGGCTTTTCAGAGAAAACAAAGTGTTAGATGAAGCTAACAAAAGATTACTAAAGCAGTACCGCATGGAAAGAAACAATTCTGGTTCTGATGGAAAGCATACTGATGTATCAACGAAGTCAAACAAGCGAAAATCTAGCTCTAAGGTGATGACCAGCAGCCCGATTCAGGGGAAGATCGATTTCAGTGACCAAGAATCAGCAAGACAACCTCTCTCACCCTTGCCTTGTAACTCCCCTAACTCAAGACTGCATAAAAAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

251

Amino Acids

29.14

Weight (kDa)

8.54

Isoelectric Point (pI)

52.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39010 AT2G39010 AT3G54820
fragaria_vesca	FvH4_3g32260 FvH4_7g19490 FvH4_7g19490 FvH4_7g19490 FvH4_7g19490
malus_domestica	MD01G1108500.v1.1 MD03G1117900.v1.1 MD07G1174700.v1.1 MD11G1136200.v1.1
prunus_persica	Prupe.2G213600_v2.0.a1 Prupe.6G101600_v2.0.a1
pyrus_communis	pycom01g13550 pycom07g16910 pycom11g11280
rosa_chinensis	RchiOBHm_Chr1g0363361 RchiOBHm_Chr5g0059051
rosa_laevigata	RLG00000027572 RLG00000035277
rosa_multiflora	Rmu_sc0001297.1_g000001 Rmu_sc0002983.1_g000042
rosa_roxburghii	Rroxscaffold_1G00021350 Rroxscaffold_4G00293230
rosa_rugosa	Rorug01G0306500 Rorug05G0320100
rosa_samantha	Rh1AG315400 Rh1BG278600 Rh1CG295100 Rh1DG309700 Rh5BG397000 Rh5DG413100
rosa_wichuraiana	Rw1G027940 Rw5G036290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	24
AccII	CGCG	1 cut(s)	135
AciI	CCGC	4 cut(s)	14, 75, 209, 553
AclWI	GGATC	2 cut(s)	12, 467
AcuI	CTGAAG	2 cut(s)	398, 498
AfaI	GTAC	2 cut(s)	143, 551
AfiI	CCNNNNNNNGG	4 cut(s)	109, 145, 658, 659
AflII	CTTAAG	1 cut(s)	434
AgsI	TTSAA	3 cut(s)	94, 307, 406
AluBI	AGCT	3 cut(s)	100, 527, 630
AluI	AGCT	3 cut(s)	100, 527, 630
Alw21I	GWGCWC	1 cut(s)	110
Alw26I	GTCTC	2 cut(s)	196, 323
AlwI	GGATC	2 cut(s)	12, 467
AoxI	GGCC	2 cut(s)	240, 365
ApeKI	GCWGC	2 cut(s)	130, 648
Asp700I	GAANNNNTTC	1 cut(s)	568
AspLEI	GCGC	1 cut(s)	135
AspS9I	GGNCC	1 cut(s)	240
AsuHPI	GGTGA	2 cut(s)	649, 699
BaeI	ACNNNNGTAYC	2 cut(s)	582, 615
BamHI	GGATCC	1 cut(s)	4
Bbv12I	GWGCWC	1 cut(s)	110
BbvI	GCAGC	2 cut(s)	117, 660
BccI	CCATC	1 cut(s)	575
BceAI	ACGGC	2 cut(s)	143, 352
BcoDI	GTCTC	2 cut(s)	196, 323
BfaI	CTAG	3 cut(s)	206, 392, 627
BfrI	CTTAAG	1 cut(s)	434
BglI	GCCNNNNNGGC	1 cut(s)	248
BisI	GCNGC	3 cut(s)	131, 210, 649
BlsI	GCNGC	3 cut(s)	132, 211, 650
BmgT120I	GGNCC	1 cut(s)	240
BmiI	GGNNCC	1 cut(s)	6
BmrI	ACTGGG	1 cut(s)	293
BmsI	GCATC	1 cut(s)	232
BmuI	ACTGGG	1 cut(s)	293
Bpu10I	CCTNAGC	1 cut(s)	168
BpuEI	CTTGAG	2 cut(s)	382, 718
Bsa29I	ATCGAT	1 cut(s)	669
BsaJI	CCNNGG	1 cut(s)	243
BsaWI	WCCGGW	1 cut(s)	102
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 145, 658, 659
Bse1I	ACTGG	2 cut(s)	139, 288
BseCI	ATCGAT	1 cut(s)	669
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	4 cut(s)	109, 145, 658, 659
BseMII	CTCAG	3 cut(s)	182, 243, 390
BseNI	ACTGG	2 cut(s)	139, 288
BseRI	GAGGAG	2 cut(s)	206, 497
BseXI	GCAGC	2 cut(s)	117, 660
Bsh1236I	CGCG	1 cut(s)	135
BshFI	GGCC	2 cut(s)	242, 367
BshVI	ATCGAT	1 cut(s)	669
BsiHKAI	GWGCWC	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	103
BslFI	GGGAC	1 cut(s)	300
BslI	CCNNNNNNNGG	4 cut(s)	109, 145, 658, 659
BsmAI	GTCTC	2 cut(s)	196, 323
BsmBI	CGTCTC	1 cut(s)	323
BsmFI	GGGAC	1 cut(s)	300
BsnI	GGCC	2 cut(s)	242, 367
Bsp1286I	GDGCHC	1 cut(s)	110
Bsp143I	GATC	3 cut(s)	4, 459, 666
BspACI	CCGC	4 cut(s)	14, 75, 209, 553
BspANI	GGCC	2 cut(s)	242, 367
BspCNI	CTCAG	3 cut(s)	181, 244, 391
BspDI	ATCGAT	1 cut(s)	669
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	2 cut(s)	12, 467
BspTI	CTTAAG	1 cut(s)	434
BsrI	ACTGG	2 cut(s)	139, 288
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	3 cut(s)	4, 459, 666
BssT1I	CCWWGG	1 cut(s)	243
Bst6I	CTCTTC	3 cut(s)	15, 261, 474
BstAFI	CTTAAG	1 cut(s)	434
BstDEI	CTNAG	5 cut(s)	168, 252, 399, 455, 633
BstF5I	GGATG	1 cut(s)	283
BstFNI	CGCG	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	3 cut(s)	7, 462, 669
BstMAI	GTCTC	2 cut(s)	196, 323
BstMBI	GATC	3 cut(s)	4, 459, 666
BstMWI	GCNNNNNNNGC	3 cut(s)	130, 248, 748
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	2 cut(s)	117, 660
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
Bsu15I	ATCGAT	1 cut(s)	669
BsuRI	GGCC	2 cut(s)	242, 367
BsuTUI	ATCGAT	1 cut(s)	669
BtsCI	GGATG	1 cut(s)	283
BtsIMutI	CAGTG	1 cut(s)	682
CfoI	GCGC	1 cut(s)	135
Cfr13I	GGNCC	1 cut(s)	240
ClaI	ATCGAT	1 cut(s)	669
CseI	GACGC	1 cut(s)	340
Csp6I	GTAC	2 cut(s)	142, 550
CviAII	CATG	1 cut(s)	556
CviQI	GTAC	2 cut(s)	142, 550
DdeI	CTNAG	5 cut(s)	168, 252, 399, 455, 633
DpnI	GATC	3 cut(s)	6, 461, 668
DpnII	GATC	3 cut(s)	4, 459, 666
Eam1104I	CTCTTC	3 cut(s)	15, 261, 474
EarI	CTCTTC	3 cut(s)	15, 261, 474
Eco130I	CCWWGG	1 cut(s)	243
Eco57I	CTGAAG	2 cut(s)	398, 498
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
Esp3I	CGTCTC	1 cut(s)	323
FaeI	CATG	1 cut(s)	559
FaiI	YATR	4 cut(s)	161, 557, 591, 744
FaqI	GGGAC	1 cut(s)	300
FatI	CATG	1 cut(s)	555
FblI	GTMKAC	1 cut(s)	24
Fnu4HI	GCNGC	3 cut(s)	131, 210, 649
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	3 cut(s)	131, 210, 649
FspBI	CTAG	3 cut(s)	206, 392, 627
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	3 cut(s)	131, 210, 649
HaeIII	GGCC	2 cut(s)	242, 367
HapII	CCGG	1 cut(s)	103
HgaI	GACGC	1 cut(s)	340
HhaI	GCGC	1 cut(s)	135
Hin1II	CATG	1 cut(s)	559
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	6 cut(s)	41, 82, 196, 357, 655, 686
HpaII	CCGG	1 cut(s)	103
HphI	GGTGA	2 cut(s)	649, 699
Hpy166II	GTNNAC	2 cut(s)	25, 144
Hpy188I	TCNGA	6 cut(s)	38, 112, 201, 417, 503, 580
Hpy188III	TCNNGA	3 cut(s)	86, 361, 735
Hpy8I	GTNNAC	2 cut(s)	25, 144
Hpy99I	CGWCG	2 cut(s)	29, 129
HpyAV	CCTTC	1 cut(s)	433
HpyCH4V	TGCA	2 cut(s)	223, 742
HpyF10VI	GCNNNNNNNGC	3 cut(s)	130, 248, 748
HpyF3I	CTNAG	5 cut(s)	168, 252, 399, 455, 633
Hsp92II	CATG	1 cut(s)	559
HspAI	GCGC	1 cut(s)	133
Kzo9I	GATC	3 cut(s)	4, 459, 666
LmnI	GCTCC	1 cut(s)	105
LpnPI	CCDG	9 cut(s)	116, 152, 155, 212, 248, 269, 558, 644, 658
Lsp1109I	GCAGC	2 cut(s)	117, 660
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	3 cut(s)	206, 392, 627
MaeIII	GTNAC	2 cut(s)	677, 719
MalI	GATC	3 cut(s)	6, 461, 668
MboI	GATC	3 cut(s)	4, 459, 666
MboII	GAAGA	7 cut(s)	106, 278, 311, 430, 458, 491, 676
MfeI	CAATTG	1 cut(s)	290
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	110
MluCI	AATT	4 cut(s)	89, 290, 302, 568
MlyI	GAGTC	2 cut(s)	50, 76
MmeI	TCCRAC	1 cut(s)	252
MroXI	GAANNNNTTC	1 cut(s)	568
MseI	TTAA	1 cut(s)	435
MslI	CAYNNNNRTG	1 cut(s)	594
MspCI	CTTAAG	1 cut(s)	434
MspI	CCGG	1 cut(s)	103
MunI	CAATTG	1 cut(s)	290
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	3 cut(s)	130, 248, 748
NdeII	GATC	3 cut(s)	4, 459, 666
NlaIII	CATG	1 cut(s)	559
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	677
PcsI	WCGNNNNNNNCGW	2 cut(s)	66, 116
PdmI	GAANNNNTTC	1 cut(s)	568
PfeI	GAWTC	4 cut(s)	196, 357, 655, 686
PkrI	GCNGC	3 cut(s)	132, 211, 650
PleI	GAGTC	2 cut(s)	49, 76
PpsI	GAGTC	2 cut(s)	49, 76
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	240
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	2 cut(s)	143, 551
RsaNI	GTAC	2 cut(s)	142, 550
RseI	CAYNNNNRTG	1 cut(s)	594
SalI	GTCGAC	1 cut(s)	23
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	3 cut(s)	131, 210, 649
Sau3AI	GATC	3 cut(s)	4, 459, 666
Sau96I	GGNCC	1 cut(s)	240
SchI	GAGTC	2 cut(s)	50, 76
SduI	GDGCHC	1 cut(s)	110
SetI	ASST	6 cut(s)	102, 489, 529, 632, 639, 703
SfaNI	GCATC	1 cut(s)	232
SmiMI	CAYNNNNRTG	1 cut(s)	594
SmlI	CTYRAG	3 cut(s)	361, 434, 733
SmoI	CTYRAG	3 cut(s)	361, 434, 733
Sse9I	AATT	4 cut(s)	89, 290, 302, 568
SsiI	CCGC	4 cut(s)	14, 75, 209, 553
SspMI	CTAG	3 cut(s)	206, 392, 627
StyI	CCWWGG	1 cut(s)	243
TaqI	TCGA	6 cut(s)	24, 44, 87, 264, 338, 669
TasI	AATT	4 cut(s)	89, 290, 302, 568
TatI	WGTACW	1 cut(s)	141
TauI	GCSGC	1 cut(s)	212
TfiI	GAWTC	4 cut(s)	196, 357, 655, 686
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TscAI	CASTG	1 cut(s)	682
TseFI	GTSAC	1 cut(s)	677
TseI	GCWGC	2 cut(s)	130, 648
Tsp45I	GTSAC	1 cut(s)	677
TspDTI	ATGAA	5 cut(s)	176, 294, 336, 441, 537
TspRI	CASTG	1 cut(s)	682
Vha464I	CTTAAG	1 cut(s)	434
XmiI	GTMKAC	1 cut(s)	24
XmnI	GAANNNNTTC	1 cut(s)	568
XspI	CTAG	3 cut(s)	206, 392, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.