Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001297.1

Orthogroup ID

OG0003494

Physical Location & Seq

Genomic Coordinates Forward (+)

2233 .. 4709

Gene Structure 2477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001297.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

atggcgaaggacgttgaagttgccgagcggggttccttctcagccaaggactaccatgacccgcctccagctccgctcttcgactcggttgagctgaccaaatggtcgttctacagagctgttatagctgagttcatagcaacccttctgtttctgtacatcactgtgctgactgtgatcgggtacaagtcccaaagcgagaccgacgactgcggcggagttgggattttgggtattgcctgggcctttggaggcatgatcttcatcctcgtttactgcactgctggaatctcagggggtcacattaacccggctgtgacttttgggctgttcttggcccggaaggtgtcgctggtccgagctgtgatgtacatagtggctcagagtttgggtgccatagccggagttgggctagtcaaggctttccagagttcttactataaaaagtttggcggtggagccaatacgcttgctgatgggtacagcactggagttggattgtctgctgagattattgggacctttgtgctggtttacaccgttttctctgccactgacccaaagaggagtgctagagattcccatgttccggttttggcaccacttccaattgggtttgctgtgttcatggttcacttggccaccatcccaatcaccggcacgggcatcaaccccgctagaagtcttggagctgccgttatcttagacgacaagaaggcttgggatgaccagtggatcttctgggttggaccctttattggtgcagcaattgcagctttctaccaccagttcatcttgagagcaggagctatgggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005215 GO:0005372 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006833 GO:0006855 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0015250 GO:0015267 GO:0015318 GO:0015893 GO:0016020 GO:0016021 GO:0019899 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0031625 GO:0033993 GO:0034220 GO:0042044 GO:0042221 GO:0042493 GO:0042891 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044389 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071944 GO:0080170 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

272

Amino Acids

28.93

Weight (kDa)

6.96

Isoelectric Point (pI)

34.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39010 AT2G39010 AT3G54820
fragaria_vesca	FvH4_3g32260 FvH4_7g19490 FvH4_7g19490 FvH4_7g19490 FvH4_7g19490
malus_domestica	MD01G1108500.v1.1 MD03G1117900.v1.1 MD07G1174700.v1.1 MD11G1136200.v1.1
prunus_persica	Prupe.2G213600_v2.0.a1 Prupe.6G101600_v2.0.a1
pyrus_communis	pycom01g13550 pycom07g16910 pycom11g11280
rosa_chinensis	RchiOBHm_Chr1g0363361 RchiOBHm_Chr5g0059051
rosa_laevigata	RLG00000027572 RLG00000035277
rosa_multiflora	Rmu_sc0001297.1_g000001 Rmu_sc0002983.1_g000042
rosa_roxburghii	Rroxscaffold_1G00021350 Rroxscaffold_4G00293230
rosa_rugosa	Rorug01G0306500 Rorug05G0320100
rosa_samantha	Rh1AG315400 Rh1BG278600 Rh1CG295100 Rh1DG309700 Rh5BG397000 Rh5DG413100
rosa_wichuraiana	Rw1G027940 Rw5G036290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	103
AccB1I	GGYRCC	2 cut(s)	392, 598
AccBSI	CCGCTC	2 cut(s)	28, 76
AciI	CCGC	7 cut(s)	28, 62, 74, 213, 216, 453, 675
AclWI	GGATC	1 cut(s)	743
AcoI	YGGCCR	1 cut(s)	639
AfaI	GTAC	4 cut(s)	158, 185, 371, 482
AfiI	CCNNNNNNNGG	4 cut(s)	408, 589, 656, 758
AgsI	TTSAA	1 cut(s)	17
AjnI	CCWGG	1 cut(s)	239
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	8 cut(s)	71, 94, 119, 128, 362, 692, 776, 809
AluI	AGCT	8 cut(s)	71, 94, 119, 128, 362, 692, 776, 809
Alw26I	GTCTC	1 cut(s)	194
AlwI	GGATC	1 cut(s)	743
AoxI	GGCC	3 cut(s)	243, 336, 639
ApeKI	GCWGC	3 cut(s)	692, 764, 773
AspS9I	GGNCC	5 cut(s)	243, 337, 355, 519, 749
AsuC2I	CCSGG	2 cut(s)	311, 340
AsuHPI	GGTGA	1 cut(s)	646
AvaII	GGWCC	3 cut(s)	355, 519, 749
BalI	TGGCCA	1 cut(s)	641
BanI	GGYRCC	2 cut(s)	392, 598
BbvI	GCAGC	3 cut(s)	679, 776, 785
BccI	CCATC	2 cut(s)	470, 653
BceAI	ACGGC	1 cut(s)	680
BciT130I	CCWGG	1 cut(s)	241
BcnI	CCSGG	2 cut(s)	311, 340
BcoDI	GTCTC	1 cut(s)	194
BfaI	CTAG	3 cut(s)	413, 573, 678
BfmI	CTRYAG	1 cut(s)	112
BisI	GCNGC	4 cut(s)	214, 693, 765, 774
BlsI	GCNGC	4 cut(s)	215, 694, 766, 775
Bme1390I	CCNGG	3 cut(s)	241, 311, 340
Bme18I	GGWCC	3 cut(s)	355, 519, 749
BmgT120I	GGNCC	5 cut(s)	243, 337, 355, 519, 749
BmiI	GGNNCC	6 cut(s)	34, 394, 460, 520, 600, 751
BmrFI	CCNGG	3 cut(s)	241, 311, 340
BmsI	GCATC	1 cut(s)	675
BpmI	CTGGAG	2 cut(s)	51, 510
BpuEI	CTTGAG	1 cut(s)	817
BpuMI	CCSGG	2 cut(s)	311, 340
BsaBI	GATNNNNATC	1 cut(s)	263
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	2 cut(s)	45, 240
BsaWI	WCCGGW	1 cut(s)	589
BsaXI	ACNNNNNCTCC	2 cut(s)	681, 711
Bsc4I	CCNNNNNNNGG	4 cut(s)	408, 589, 656, 758
Bse118I	RCCGGY	1 cut(s)	656
Bse1I	ACTGG	3 cut(s)	493, 730, 787
Bse8I	GATNNNNATC	1 cut(s)	263
BseBI	CCWGG	1 cut(s)	241
BseDI	CCNNGG	2 cut(s)	45, 240
BseGI	GGATG	3 cut(s)	264, 645, 730
BseJI	GATNNNNATC	1 cut(s)	263
BseLI	CCNNNNNNNGG	4 cut(s)	408, 589, 656, 758
BseMII	CTCAG	5 cut(s)	54, 120, 306, 395, 498
BseNI	ACTGG	3 cut(s)	493, 730, 787
BseRI	GAGGAG	1 cut(s)	580
BseXI	GCAGC	3 cut(s)	679, 776, 785
BsgI	GTGCAG	2 cut(s)	262, 783
BshFI	GGCC	3 cut(s)	245, 338, 641
BshNI	GGYRCC	2 cut(s)	392, 598
BsiSI	CCGG	5 cut(s)	311, 340, 402, 590, 657
BslFI	GGGAC	2 cut(s)	175, 532
BslI	CCNNNNNNNGG	4 cut(s)	408, 589, 656, 758
BsmAI	GTCTC	1 cut(s)	194
BsmFI	GGGAC	2 cut(s)	175, 532
BsnI	GGCC	3 cut(s)	245, 338, 641
Bso31I	GGTCTC	1 cut(s)	194
Bsp1407I	TGTACA	2 cut(s)	156, 369
Bsp143I	GATC	3 cut(s)	177, 258, 735
BspACI	CCGC	7 cut(s)	28, 62, 74, 213, 216, 453, 675
BspANI	GGCC	3 cut(s)	245, 338, 641
BspCNI	CTCAG	5 cut(s)	53, 121, 305, 394, 499
BspLI	GGNNCC	6 cut(s)	34, 394, 460, 520, 600, 751
BspPI	GGATC	1 cut(s)	743
BspQI	GCTCTTC	1 cut(s)	83
BspT107I	GGYRCC	2 cut(s)	392, 598
BspTNI	GGTCTC	1 cut(s)	194
BsrBI	CCGCTC	2 cut(s)	28, 76
BsrFI	RCCGGY	1 cut(s)	656
BsrGI	TGTACA	2 cut(s)	156, 369
BsrI	ACTGG	3 cut(s)	493, 730, 787
BssAI	RCCGGY	1 cut(s)	656
BssECI	CCNNGG	2 cut(s)	45, 240
BssMI	GATC	3 cut(s)	177, 258, 735
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	1 cut(s)	241
Bst4CI	ACNGT	3 cut(s)	166, 175, 541
Bst6I	CTCTTC	1 cut(s)	83
BstAPI	GCANNNNNTGC	1 cut(s)	770
BstAUI	TGTACA	2 cut(s)	156, 369
BstC8I	GCNNGC	1 cut(s)	471
BstDEI	CTNAG	6 cut(s)	40, 129, 292, 381, 507, 703
BstF5I	GGATG	3 cut(s)	264, 645, 730
BstKTI	GATC	3 cut(s)	180, 261, 738
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	3 cut(s)	177, 258, 735
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 770, 773
BstNI	CCWGG	1 cut(s)	241
BstSCI	CCNGG	3 cut(s)	239, 309, 338
BstSFI	CTRYAG	1 cut(s)	112
BstV1I	GCAGC	3 cut(s)	679, 776, 785
BstX2I	RGATCY	1 cut(s)	735
BstYI	RGATCY	1 cut(s)	735
BsuRI	GGCC	3 cut(s)	245, 338, 641
BtsCI	GGATG	3 cut(s)	264, 645, 730
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	5 cut(s)	162, 279, 486, 552, 737
Cac8I	GCNNGC	1 cut(s)	471
Cfr10I	RCCGGY	1 cut(s)	656
Cfr13I	GGNCC	5 cut(s)	243, 337, 355, 519, 749
Csp6I	GTAC	4 cut(s)	157, 184, 370, 481
CviAII	CATG	4 cut(s)	56, 256, 584, 628
CviQI	GTAC	4 cut(s)	157, 184, 370, 481
DdeI	CTNAG	6 cut(s)	40, 129, 292, 381, 507, 703
DpnI	GATC	3 cut(s)	179, 260, 737
DpnII	GATC	3 cut(s)	177, 258, 735
DrdI	GACNNNNNNGTC	1 cut(s)	103
DseDI	GACNNNNNNGTC	1 cut(s)	103
EaeI	YGGCCR	1 cut(s)	639
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
EciI	GGCGGA	1 cut(s)	231
Eco130I	CCWWGG	1 cut(s)	45
Eco31I	GGTCTC	1 cut(s)	194
Eco47I	GGWCC	3 cut(s)	355, 519, 749
EcoO109I	RGGNCCY	1 cut(s)	519
EcoRII	CCWGG	1 cut(s)	239
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	4 cut(s)	59, 259, 587, 631
FaqI	GGGAC	2 cut(s)	175, 532
FatI	CATG	4 cut(s)	55, 255, 583, 627
FauI	CCCGC	3 cut(s)	21, 69, 682
Fnu4HI	GCNGC	4 cut(s)	214, 693, 765, 774
FokI	GGATG	3 cut(s)	251, 632, 737
Fsp4HI	GCNGC	4 cut(s)	214, 693, 765, 774
FspBI	CTAG	3 cut(s)	413, 573, 678
GluI	GCNGC	4 cut(s)	214, 693, 765, 774
GsuI	CTGGAG	2 cut(s)	51, 510
HaeIII	GGCC	3 cut(s)	245, 338, 641
HapII	CCGG	5 cut(s)	311, 340, 402, 590, 657
Hin1II	CATG	4 cut(s)	59, 259, 587, 631
HinfI	GANTC	3 cut(s)	83, 288, 578
HpaII	CCGG	5 cut(s)	311, 340, 402, 590, 657
HphI	GGTGA	1 cut(s)	646
Hpy166II	GTNNAC	3 cut(s)	274, 535, 634
Hpy188I	TCNGA	2 cut(s)	359, 384
Hpy188III	TCNNGA	2 cut(s)	427, 796
Hpy8I	GTNNAC	3 cut(s)	274, 535, 634
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	4 cut(s)	46, 155, 337, 709
HpyCH4III	ACNGT	3 cut(s)	166, 175, 541
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	3 cut(s)	279, 764, 773
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 770, 773
HpyF3I	CTNAG	6 cut(s)	40, 129, 292, 381, 507, 703
HpySE526I	ACGT	1 cut(s)	12
Hsp92II	CATG	4 cut(s)	59, 259, 587, 631
Kzo9I	GATC	3 cut(s)	177, 258, 735
LguI	GCTCTTC	1 cut(s)	83
LmnI	GCTCC	4 cut(s)	76, 458, 689, 806
Lsp1109I	GCAGC	3 cut(s)	679, 776, 785
LweI	GCATC	1 cut(s)	675
MaeI	CTAG	3 cut(s)	413, 573, 678
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	2 cut(s)	299, 316
MalI	GATC	3 cut(s)	179, 260, 737
MbiI	CCGCTC	2 cut(s)	28, 76
MboI	GATC	3 cut(s)	177, 258, 735
MboII	GAAGA	3 cut(s)	70, 253, 730
MfeI	CAATTG	2 cut(s)	609, 768
MflI	RGATCY	1 cut(s)	735
MlsI	TGGCCA	1 cut(s)	641
MluCI	AATT	2 cut(s)	609, 768
MluNI	TGGCCA	1 cut(s)	641
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	2 cut(s)	475, 727
MnlI	CCTC	4 cut(s)	75, 245, 278, 558
Mox20I	TGGCCA	1 cut(s)	641
MscI	TGGCCA	1 cut(s)	641
MseI	TTAA	1 cut(s)	306
MslI	CAYNNNNRTG	1 cut(s)	164
Msp20I	TGGCCA	1 cut(s)	641
MspI	CCGG	5 cut(s)	311, 340, 402, 590, 657
MspR9I	CCNGG	3 cut(s)	241, 311, 340
MunI	CAATTG	2 cut(s)	609, 768
MvaI	CCWGG	1 cut(s)	241
MwoI	GCNNNNNNNGC	3 cut(s)	125, 770, 773
NciI	CCSGG	2 cut(s)	311, 340
NdeII	GATC	3 cut(s)	177, 258, 735
NlaIII	CATG	4 cut(s)	59, 259, 587, 631
NlaIV	GGNNCC	6 cut(s)	34, 394, 460, 520, 600, 751
NmeAIII	GCCGAG	1 cut(s)	49
NmuCI	GTSAC	2 cut(s)	299, 316
PciSI	GCTCTTC	1 cut(s)	83
PfeI	GAWTC	2 cut(s)	288, 578
PkrI	GCNGC	4 cut(s)	215, 694, 766, 775
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
PpuMI	RGGWCCY	1 cut(s)	519
Psp5II	RGGWCCY	1 cut(s)	519
Psp6I	CCWGG	1 cut(s)	239
PspGI	CCWGG	1 cut(s)	239
PspN4I	GGNNCC	6 cut(s)	34, 394, 460, 520, 600, 751
PspPI	GGNCC	5 cut(s)	243, 337, 355, 519, 749
PspPPI	RGGWCCY	1 cut(s)	519
PsuI	RGATCY	1 cut(s)	735
RsaI	GTAC	4 cut(s)	158, 185, 371, 482
RsaNI	GTAC	4 cut(s)	157, 184, 370, 481
RseI	CAYNNNNRTG	1 cut(s)	164
SapI	GCTCTTC	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	4 cut(s)	214, 693, 765, 774
Sau3AI	GATC	3 cut(s)	177, 258, 735
Sau96I	GGNCC	5 cut(s)	243, 337, 355, 519, 749
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	3 cut(s)	241, 311, 340
SfaNI	GCATC	1 cut(s)	675
SfcI	CTRYAG	1 cut(s)	112
SinI	GGWCC	3 cut(s)	355, 519, 749
SmiMI	CAYNNNNRTG	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	796
SmoI	CTYRAG	1 cut(s)	796
Sse9I	AATT	2 cut(s)	609, 768
SsiI	CCGC	7 cut(s)	28, 62, 74, 213, 216, 453, 675
SspMI	CTAG	3 cut(s)	413, 573, 678
StyD4I	CCNGG	3 cut(s)	239, 309, 338
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	3 cut(s)	166, 175, 541
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	1 cut(s)	81
TaqII	GACCGA	1 cut(s)	218
TasI	AATT	2 cut(s)	609, 768
TatI	WGTACW	2 cut(s)	156, 369
TauI	GCSGC	1 cut(s)	216
TfiI	GAWTC	2 cut(s)	288, 578
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	5 cut(s)	169, 286, 493, 559, 737
TseFI	GTSAC	2 cut(s)	299, 316
TseI	GCWGC	3 cut(s)	692, 764, 773
Tsp45I	GTSAC	2 cut(s)	299, 316
TspDTI	ATGAA	4 cut(s)	124, 253, 616, 781
TspRI	CASTG	5 cut(s)	169, 286, 493, 559, 737
VpaK11BI	GGWCC	3 cut(s)	355, 519, 749
XspI	CTAG	3 cut(s)	413, 573, 678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.