Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0003494

Physical Location & Seq

Genomic Coordinates Forward (+)

22141508 .. 22146252

Gene Structure 4745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1108500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCCAAGGACATGGAAGTTGCAGAGAGGGGCTCCTTCCCAGCCAAGGACTACCACGACCCGCCGCCTGCGCCGCTCTTCGACCCGGCTGAGCTCGCCAAATGGTCCTTCTACAGAGCTCTCATAGCTGAGTTCGTAGCCACTCTTCTCTTTCTCTACGTCACTGTGCTCACTGTGATTGGCTACAAGAGCCAGACCGAACTAGACAATTGCGGTGGGGTTGGGACCCTGGGGATTGCTTGGGCCTTTGGGGGCATGATCTTTGTCCTTGTTTACTGCACTGCTGGGATTTCAGGGGGTCACATTAACCCGGCAGTGACATTTGGGCTGTGCCTGGCTCGGAAGGTGTCGCCGGTGAGAGCTGTGCTGTACATGGTGGCTCAGTCGTTGGGGGCCATAGCCGGTGTTGCGCTGGTGAAGGCTATCCAGAAGAGCTACTACACCAAGTACGGCGGCGGTGCCAACTCACTTAGCGATGGGTACAGCATCGGAGTTGGATTGGCTGCTGAGATTATTGGCACCTTTGTGCTCGTTTACACCGTTTTCTCTGCCACTGACCCCAAGAGGAGTGCTAGAGACTCCCATGTTCCGGTTTTGGCTCCACTGCCAATCGGGTTTGCTGTGTTCATTGTTCATTTGGCCACCATCCCAATCACTGGCACTGGCATCAACCCTGCTAGAAGTCTTGGACCTGCTGTTATCTTCAACCAAGACAAGGCTTGGGATGACCAATGGATTTTCTGGGTTGGACCCTTCATCGGAGCAGCAATTGCAGCCTTCTACCACCAATTTATCTTGAGAGCAGGAGCTGCCAAGGCCCTTGGATCATTCAGGAGCCACCCGAGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005215 GO:0005372 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006833 GO:0006855 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0015250 GO:0015267 GO:0015318 GO:0015893 GO:0016020 GO:0016021 GO:0019899 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0031625 GO:0033993 GO:0034220 GO:0042044 GO:0042221 GO:0042493 GO:0042891 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044389 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051181 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0071944 GO:0080170 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

284

Amino Acids

30.05

Weight (kDa)

8.68

Isoelectric Point (pI)

36.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	31 - 262	7.9e-83	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39010 AT2G39010 AT3G54820
fragaria_vesca	FvH4_3g32260 FvH4_7g19490 FvH4_7g19490 FvH4_7g19490 FvH4_7g19490
malus_domestica	MD01G1108500.v1.1 MD03G1117900.v1.1 MD07G1174700.v1.1 MD11G1136200.v1.1
prunus_persica	Prupe.2G213600_v2.0.a1 Prupe.6G101600_v2.0.a1
pyrus_communis	pycom01g13550 pycom07g16910 pycom11g11280
rosa_chinensis	RchiOBHm_Chr1g0363361 RchiOBHm_Chr5g0059051
rosa_laevigata	RLG00000027572 RLG00000035277
rosa_multiflora	Rmu_sc0001297.1_g000001 Rmu_sc0002983.1_g000042
rosa_roxburghii	Rroxscaffold_1G00021350 Rroxscaffold_4G00293230
rosa_rugosa	Rorug01G0306500 Rorug05G0320100
rosa_samantha	Rh1AG315400 Rh1BG278600 Rh1CG295100 Rh1DG309700 Rh5BG397000 Rh5DG413100
rosa_wichuraiana	Rw1G027940 Rw5G036290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	700
AccB1I	GGYRCC	2 cut(s)	458, 518
AccB7I	CCANNNNNTGG	1 cut(s)	656
AccBSI	CCGCTC	1 cut(s)	76
AciI	CCGC	6 cut(s)	62, 65, 74, 213, 453, 456
AclWI	GGATC	1 cut(s)	832
AcoI	YGGCCR	2 cut(s)	3, 639
AfaI	GTAC	3 cut(s)	371, 449, 482
AfiI	CCNNNNNNNGG	5 cut(s)	46, 589, 656, 715, 758
AgsI	TTSAA	1 cut(s)	706
AjnI	CCWGG	2 cut(s)	228, 333
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AleI	CACNNNNGTG	2 cut(s)	524, 843
AluBI	AGCT	6 cut(s)	94, 119, 128, 362, 435, 809
AluI	AGCT	6 cut(s)	94, 119, 128, 362, 435, 809
Alw21I	GWGCWC	4 cut(s)	96, 121, 171, 531
Alw26I	GTCTC	1 cut(s)	570
AlwI	GGATC	1 cut(s)	832
AlwNI	CAGNNNCTG	1 cut(s)	809
Ama87I	CYCGRG	1 cut(s)	841
AoxI	GGCC	5 cut(s)	3, 243, 393, 639, 816
ApeKI	GCWGC	4 cut(s)	503, 764, 773, 809
AspLEI	GCGC	2 cut(s)	73, 412
AspS9I	GGNCC	7 cut(s)	105, 225, 243, 393, 689, 749, 817
AsuC2I	CCSGG	2 cut(s)	86, 311
AsuHPI	GGTGA	2 cut(s)	367, 427
AvaI	CYCGRG	1 cut(s)	841
AvaII	GGWCC	4 cut(s)	105, 225, 689, 749
BalI	TGGCCA	2 cut(s)	5, 641
BanI	GGYRCC	2 cut(s)	458, 518
BanII	GRGCYC	3 cut(s)	35, 96, 121
BarI	GAAGNNNNNNTAC	4 cut(s)	129, 161, 422, 454
Bbv12I	GWGCWC	4 cut(s)	96, 121, 171, 531
BbvI	GCAGC	4 cut(s)	490, 776, 785, 796
BccI	CCATC	2 cut(s)	470, 653
BceAI	ACGGC	1 cut(s)	466
BciT130I	CCWGG	2 cut(s)	230, 335
BcnI	CCSGG	2 cut(s)	86, 311
BcoDI	GTCTC	1 cut(s)	570
BfaI	CTAG	3 cut(s)	203, 573, 678
BfmI	CTRYAG	1 cut(s)	112
BfuAI	ACCTGC	1 cut(s)	700
BisI	GCNGC	7 cut(s)	65, 74, 454, 504, 765, 774, 810
BlpI	GCTNAGC	1 cut(s)	90
BlsI	GCNGC	7 cut(s)	66, 75, 455, 505, 766, 775, 811
Bme1390I	CCNGG	4 cut(s)	86, 230, 311, 335
Bme18I	GGWCC	4 cut(s)	105, 225, 689, 749
BmeT110I	CYCGRG	1 cut(s)	841
BmgT120I	GGNCC	7 cut(s)	105, 225, 243, 393, 689, 749, 817
BmiI	GGNNCC	9 cut(s)	34, 226, 227, 394, 460, 520, 600, 751, 836
BmrFI	CCNGG	4 cut(s)	86, 230, 311, 335
BmsI	GCATC	2 cut(s)	495, 675
BplI	GAGNNNNNCTC	2 cut(s)	17, 49
Bpu1102I	GCTNAGC	1 cut(s)	90
BpuEI	CTTGAG	1 cut(s)	817
BpuMI	CCSGG	2 cut(s)	86, 311
BsaJI	CCNNGG	6 cut(s)	6, 45, 228, 229, 813, 820
BsaWI	WCCGGW	1 cut(s)	589
Bsc4I	CCNNNNNNNGG	5 cut(s)	46, 589, 656, 715, 758
Bse118I	RCCGGY	2 cut(s)	352, 401
Bse1I	ACTGG	2 cut(s)	661, 667
BseBI	CCWGG	2 cut(s)	230, 335
BseDI	CCNNGG	6 cut(s)	6, 45, 228, 229, 813, 820
BseGI	GGATG	2 cut(s)	645, 730
BseLI	CCNNNNNNNGG	5 cut(s)	46, 589, 656, 715, 758
BseMII	CTCAG	4 cut(s)	81, 120, 395, 498
BseNI	ACTGG	2 cut(s)	661, 667
BseRI	GAGGAG	1 cut(s)	580
BseXI	GCAGC	4 cut(s)	490, 776, 785, 796
BseYI	CCCAGC	2 cut(s)	40, 284
BsgI	GTGCAG	1 cut(s)	262
BshFI	GGCC	5 cut(s)	5, 245, 395, 641, 818
BshNI	GGYRCC	2 cut(s)	458, 518
BsiHKAI	GWGCWC	4 cut(s)	96, 121, 171, 531
BsiHKCI	CYCGRG	1 cut(s)	841
BsiSI	CCGG	5 cut(s)	86, 311, 353, 402, 590
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	5 cut(s)	46, 589, 656, 715, 758
BsmAI	GTCTC	1 cut(s)	570
BsmFI	GGGAC	1 cut(s)	238
BsnI	GGCC	5 cut(s)	5, 245, 395, 641, 818
BsoBI	CYCGRG	1 cut(s)	841
Bsp1286I	GDGCHC	5 cut(s)	35, 96, 121, 171, 531
Bsp1407I	TGTACA	1 cut(s)	369
Bsp143I	GATC	2 cut(s)	258, 824
Bsp1720I	GCTNAGC	1 cut(s)	90
BspACI	CCGC	6 cut(s)	62, 65, 74, 213, 453, 456
BspANI	GGCC	5 cut(s)	5, 245, 395, 641, 818
BspCNI	CTCAG	4 cut(s)	82, 121, 394, 499
BspLI	GGNNCC	9 cut(s)	34, 226, 227, 394, 460, 520, 600, 751, 836
BspMI	ACCTGC	1 cut(s)	700
BspPI	GGATC	1 cut(s)	832
BspQI	GCTCTTC	2 cut(s)	83, 425
BspT107I	GGYRCC	2 cut(s)	458, 518
BsrBI	CCGCTC	1 cut(s)	76
BsrFI	RCCGGY	2 cut(s)	352, 401
BsrGI	TGTACA	1 cut(s)	369
BsrI	ACTGG	2 cut(s)	661, 667
BssAI	RCCGGY	2 cut(s)	352, 401
BssECI	CCNNGG	6 cut(s)	6, 45, 228, 229, 813, 820
BssMI	GATC	2 cut(s)	258, 824
BssT1I	CCWWGG	4 cut(s)	6, 45, 813, 820
Bst2UI	CCWGG	2 cut(s)	230, 335
Bst4CI	ACNGT	3 cut(s)	166, 175, 541
Bst6I	CTCTTC	3 cut(s)	83, 150, 425
BstAPI	GCANNNNNTGC	2 cut(s)	770, 809
BstAUI	TGTACA	1 cut(s)	369
BstC8I	GCNNGC	2 cut(s)	69, 96
BstDEI	CTNAG	5 cut(s)	90, 129, 381, 470, 507
BstF5I	GGATG	2 cut(s)	645, 730
BstHHI	GCGC	2 cut(s)	73, 412
BstKTI	GATC	2 cut(s)	261, 827
BstMAI	GTCTC	1 cut(s)	570
BstMBI	GATC	2 cut(s)	258, 824
BstNI	CCWGG	2 cut(s)	230, 335
BstSCI	CCNGG	4 cut(s)	84, 228, 309, 333
BstSFI	CTRYAG	1 cut(s)	112
BstV1I	GCAGC	4 cut(s)	490, 776, 785, 796
BstXI	CCANNNNNNTGG	1 cut(s)	13
BsuRI	GGCC	5 cut(s)	5, 245, 395, 641, 818
BtgZI	GCGATG	1 cut(s)	489
BtsCI	GGATG	2 cut(s)	645, 730
BtsI	GCAGTG	3 cut(s)	279, 321, 602
BtsIMutI	CAGTG	8 cut(s)	162, 171, 279, 321, 552, 602, 654, 660
BveI	ACCTGC	1 cut(s)	700
Cac8I	GCNNGC	2 cut(s)	69, 96
CaiI	CAGNNNCTG	1 cut(s)	809
CfoI	GCGC	2 cut(s)	73, 412
Cfr10I	RCCGGY	2 cut(s)	352, 401
Cfr13I	GGNCC	7 cut(s)	105, 225, 243, 393, 689, 749, 817
Csp6I	GTAC	3 cut(s)	370, 448, 481
CspCI	CAANNNNNGTGG	2 cut(s)	196, 231
CviAII	CATG	4 cut(s)	13, 256, 373, 584
CviQI	GTAC	3 cut(s)	370, 448, 481
DdeI	CTNAG	5 cut(s)	90, 129, 381, 470, 507
DpnI	GATC	2 cut(s)	260, 826
DpnII	GATC	2 cut(s)	258, 824
EaeI	YGGCCR	2 cut(s)	3, 639
Eam1104I	CTCTTC	3 cut(s)	83, 150, 425
EarI	CTCTTC	3 cut(s)	83, 150, 425
Ecl136II	GAGCTC	2 cut(s)	94, 119
Eco130I	CCWWGG	4 cut(s)	6, 45, 813, 820
Eco24I	GRGCYC	3 cut(s)	35, 96, 121
Eco47I	GGWCC	4 cut(s)	105, 225, 689, 749
Eco53kI	GAGCTC	2 cut(s)	94, 119
Eco88I	CYCGRG	1 cut(s)	841
EcoICRI	GAGCTC	2 cut(s)	94, 119
EcoO109I	RGGNCCY	2 cut(s)	225, 817
EcoRII	CCWGG	2 cut(s)	228, 333
EcoT14I	CCWWGG	4 cut(s)	6, 45, 813, 820
EcoT38I	GRGCYC	3 cut(s)	35, 96, 121
ErhI	CCWWGG	4 cut(s)	6, 45, 813, 820
FaeI	CATG	4 cut(s)	16, 259, 376, 587
FaiI	YATR	6 cut(s)	14, 125, 257, 374, 398, 585
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	4 cut(s)	12, 255, 372, 583
FauI	CCCGC	1 cut(s)	69
Fnu4HI	GCNGC	7 cut(s)	65, 74, 454, 504, 765, 774, 810
FokI	GGATG	2 cut(s)	632, 737
FriOI	GRGCYC	3 cut(s)	35, 96, 121
Fsp4HI	GCNGC	7 cut(s)	65, 74, 454, 504, 765, 774, 810
FspBI	CTAG	3 cut(s)	203, 573, 678
GlaI	GCGC	2 cut(s)	72, 411
GluI	GCNGC	7 cut(s)	65, 74, 454, 504, 765, 774, 810
GsaI	CCCAGC	2 cut(s)	44, 288
HaeIII	GGCC	5 cut(s)	5, 245, 395, 641, 818
HapII	CCGG	5 cut(s)	86, 311, 353, 402, 590
HhaI	GCGC	2 cut(s)	73, 412
Hin1II	CATG	4 cut(s)	16, 259, 376, 587
Hin6I	GCGC	2 cut(s)	71, 410
HinP1I	GCGC	2 cut(s)	71, 410
HinfI	GANTC	1 cut(s)	578
HpaII	CCGG	5 cut(s)	86, 311, 353, 402, 590
HphI	GGTGA	2 cut(s)	367, 427
Hpy166II	GTNNAC	2 cut(s)	274, 535
Hpy188I	TCNGA	3 cut(s)	342, 491, 761
Hpy188III	TCNNGA	3 cut(s)	427, 796, 832
Hpy8I	GTNNAC	2 cut(s)	274, 535
HpyAV	CCTTC	6 cut(s)	46, 118, 337, 412, 763, 787
HpyCH4III	ACNGT	3 cut(s)	166, 175, 541
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	3 cut(s)	23, 279, 773
HpyF3I	CTNAG	5 cut(s)	90, 129, 381, 470, 507
HpySE526I	ACGT	1 cut(s)	159
Hsp92II	CATG	4 cut(s)	16, 259, 376, 587
HspAI	GCGC	2 cut(s)	71, 410
KflI	GGGWCCC	1 cut(s)	225
Kzo9I	GATC	2 cut(s)	258, 824
LguI	GCTCTTC	2 cut(s)	83, 425
LmnI	GCTCC	5 cut(s)	38, 604, 761, 806, 834
Lsp1109I	GCAGC	4 cut(s)	490, 776, 785, 796
LweI	GCATC	2 cut(s)	495, 675
MaeI	CTAG	3 cut(s)	203, 573, 678
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	3 cut(s)	160, 299, 316
MalI	GATC	2 cut(s)	260, 826
MbiI	CCGCTC	1 cut(s)	76
MboI	GATC	2 cut(s)	258, 824
MboII	GAAGA	4 cut(s)	70, 137, 442, 694
MfeI	CAATTG	2 cut(s)	208, 768
MhlI	GDGCHC	5 cut(s)	35, 96, 121, 171, 531
MlsI	TGGCCA	2 cut(s)	5, 641
MluCI	AATT	3 cut(s)	208, 768, 788
MluNI	TGGCCA	2 cut(s)	5, 641
MlyI	GAGTC	1 cut(s)	572
MmeI	TCCRAC	2 cut(s)	475, 727
MnlI	CCTC	2 cut(s)	21, 558
Mox20I	TGGCCA	2 cut(s)	5, 641
MscI	TGGCCA	2 cut(s)	5, 641
MseI	TTAA	1 cut(s)	306
MslI	CAYNNNNRTG	2 cut(s)	524, 843
Msp20I	TGGCCA	2 cut(s)	5, 641
MspI	CCGG	5 cut(s)	86, 311, 353, 402, 590
MspR9I	CCNGG	4 cut(s)	86, 230, 311, 335
MunI	CAATTG	2 cut(s)	208, 768
MvaI	CCWGG	2 cut(s)	230, 335
NciI	CCSGG	2 cut(s)	86, 311
NdeII	GATC	2 cut(s)	258, 824
NlaIII	CATG	4 cut(s)	16, 259, 376, 587
NlaIV	GGNNCC	9 cut(s)	34, 226, 227, 394, 460, 520, 600, 751, 836
NmuCI	GTSAC	3 cut(s)	160, 299, 316
OliI	CACNNNNGTG	2 cut(s)	524, 843
PasI	CCCWGGG	1 cut(s)	229
PciSI	GCTCTTC	2 cut(s)	83, 425
PcsI	WCGNNNNNNNCGW	1 cut(s)	537
PflMI	CCANNNNNTGG	1 cut(s)	656
PkrI	GCNGC	7 cut(s)	66, 75, 455, 505, 766, 775, 811
PleI	GAGTC	1 cut(s)	572
PpsI	GAGTC	1 cut(s)	572
PpuMI	RGGWCCY	1 cut(s)	225
Psp124BI	GAGCTC	2 cut(s)	96, 121
Psp5II	RGGWCCY	1 cut(s)	225
Psp6I	CCWGG	2 cut(s)	228, 333
PspFI	CCCAGC	2 cut(s)	40, 284
PspGI	CCWGG	2 cut(s)	228, 333
PspN4I	GGNNCC	9 cut(s)	34, 226, 227, 394, 460, 520, 600, 751, 836
PspPI	GGNCC	7 cut(s)	105, 225, 243, 393, 689, 749, 817
PspPPI	RGGWCCY	1 cut(s)	225
PstNI	CAGNNNCTG	1 cut(s)	809
RsaI	GTAC	3 cut(s)	371, 449, 482
RsaNI	GTAC	3 cut(s)	370, 448, 481
RseI	CAYNNNNRTG	2 cut(s)	524, 843
SacI	GAGCTC	2 cut(s)	96, 121
SapI	GCTCTTC	2 cut(s)	83, 425
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	7 cut(s)	65, 74, 454, 504, 765, 774, 810
Sau3AI	GATC	2 cut(s)	258, 824
Sau96I	GGNCC	7 cut(s)	105, 225, 243, 393, 689, 749, 817
SchI	GAGTC	1 cut(s)	572
ScrFI	CCNGG	4 cut(s)	86, 230, 311, 335
SduI	GDGCHC	5 cut(s)	35, 96, 121, 171, 531
SfaNI	GCATC	2 cut(s)	495, 675
SfcI	CTRYAG	1 cut(s)	112
SgrAI	CRCCGGYG	1 cut(s)	352
SinI	GGWCC	4 cut(s)	105, 225, 689, 749
SmiMI	CAYNNNNRTG	2 cut(s)	524, 843
SmlI	CTYRAG	1 cut(s)	796
SmoI	CTYRAG	1 cut(s)	796
Sse9I	AATT	3 cut(s)	208, 768, 788
SsiI	CCGC	6 cut(s)	62, 65, 74, 213, 453, 456
SspMI	CTAG	3 cut(s)	203, 573, 678
SstI	GAGCTC	2 cut(s)	96, 121
StyD4I	CCNGG	4 cut(s)	84, 228, 309, 333
StyI	CCWWGG	4 cut(s)	6, 45, 813, 820
TaaI	ACNGT	3 cut(s)	166, 175, 541
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	1 cut(s)	81
TaqII	GACCGA	1 cut(s)	212
TasI	AATT	3 cut(s)	208, 768, 788
TatI	WGTACW	1 cut(s)	369
TauI	GCSGC	3 cut(s)	67, 76, 456
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	8 cut(s)	169, 178, 286, 321, 559, 609, 661, 667
TseFI	GTSAC	3 cut(s)	160, 299, 316
TseI	GCWGC	4 cut(s)	503, 764, 773, 809
Tsp45I	GTSAC	3 cut(s)	160, 299, 316
TspDTI	ATGAA	3 cut(s)	616, 623, 745
TspRI	CASTG	8 cut(s)	169, 178, 286, 321, 559, 609, 661, 667
Van91I	CCANNNNNTGG	1 cut(s)	656
VpaK11BI	GGWCC	4 cut(s)	105, 225, 689, 749
XspI	CTAG	3 cut(s)	203, 573, 678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.