Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003494

Physical Location & Seq

Genomic Coordinates Reverse (-)

7067513 .. 7069501

Gene Structure 1989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G101600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCTAAAGATGTAGAGGGAGCTGAGCATGGTGAGTTTGCAGCCAAAGACTACCATGACCCTCCTCCAACCCCCTTCTTTGATCCTGAGGAGCTGACCAAATGGTCTTTCTACAGAGCTCTTATTGCTGAGTTCGTTGCCACCCTTCTCTTCCTTTACATCACCGTTTTGACCGTCATTGGCTACAAGTCCCAGAGCAGTGGAGACCAATGCGGCGGCGTTGGCATTCTGGGCATCGCCTGGGCCTTTGGTGGCATGATCTTTGTCCTTGTTTACTGCACCGCCGGTATTTCTGGTGGACACATAAACCCAGCTGTGACCTTTGGACTATTCTTGGCTCGCAAGGTTTCACTGCCGAGGGCAGTTTTGTACATCGTAGCCCAGTCTTTGGGTGCAATCTGCGGTGTTGGGTTGGTGAAGGCCTTCCAAAAGACATACTACGAGGAGTATGGCGGTGGAGCCAACGAGTTGGCTGCTGGGTACAACAAGGGCACTGGCTTGGGAGCTGAGATCATTGGTACCTTTGTTCTTGTCTACACTGTCTTCTCTGCCACTGACCCCAAGAGAAATGCCAGAGACTCCCATGTCCCTGTCTTGGCACCACTTCCCATTGGATTTGCTGTTTTCATTGTTCACCTGGCCACCATCCCAATCACTGGAACTGGTATCAACCCTGCTAGAAGTTTTGGAGCTGCTGTGATCTACAACAAGGACAAAGCTTGGGATGACCAATGGATCTTCTGGCTTGGACCATTTATTGGAGCTGCCATTGCTGCCTTGTACCACCAATACATTCTGAGAGCAGGAGCCATTAAGGCTCTAGGGTCTTTCAGGAGCAATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

282

Amino Acids

30.06

Weight (kDa)

7.0

Isoelectric Point (pI)

31.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39010 AT2G39010 AT3G54820
fragaria_vesca	FvH4_3g32260 FvH4_7g19490 FvH4_7g19490 FvH4_7g19490 FvH4_7g19490
malus_domestica	MD01G1108500.v1.1 MD03G1117900.v1.1 MD07G1174700.v1.1 MD11G1136200.v1.1
prunus_persica	Prupe.2G213600_v2.0.a1 Prupe.6G101600_v2.0.a1
pyrus_communis	pycom01g13550 pycom07g16910 pycom11g11280
rosa_chinensis	RchiOBHm_Chr1g0363361 RchiOBHm_Chr5g0059051
rosa_laevigata	RLG00000027572 RLG00000035277
rosa_multiflora	Rmu_sc0001297.1_g000001 Rmu_sc0002983.1_g000042
rosa_roxburghii	Rroxscaffold_1G00021350 Rroxscaffold_4G00293230
rosa_rugosa	Rorug01G0306500 Rorug05G0320100
rosa_samantha	Rh1AG315400 Rh1BG278600 Rh1CG295100 Rh1DG309700 Rh5BG397000 Rh5DG413100
rosa_wichuraiana	Rw1G027940 Rw5G036290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	103, 584
Acc65I	GGTACC	1 cut(s)	518
AccB1I	GGYRCC	2 cut(s)	518, 598
AccB7I	CCANNNNNTGG	3 cut(s)	388, 656, 758
AccI	GTMKAC	1 cut(s)	534
AciI	CCGC	5 cut(s)	213, 216, 282, 402, 453
AclWI	GGATC	2 cut(s)	77, 743
AcoI	YGGCCR	1 cut(s)	639
AfaI	GTAC	4 cut(s)	371, 482, 520, 782
AfiI	CCNNNNNNNGG	4 cut(s)	388, 595, 656, 758
AjnI	CCWGG	2 cut(s)	239, 636
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	8 cut(s)	23, 94, 119, 314, 506, 692, 719, 764
AluI	AGCT	8 cut(s)	23, 94, 119, 314, 506, 692, 719, 764
Alw21I	GWGCWC	1 cut(s)	121
Alw26I	GTCTC	2 cut(s)	198, 570
AlwI	GGATC	2 cut(s)	77, 743
AoxI	GGCC	3 cut(s)	243, 420, 639
ApeKI	GCWGC	5 cut(s)	41, 473, 692, 764, 773
Asp700I	GAANNNNTTC	1 cut(s)	422
Asp718I	GGTACC	1 cut(s)	518
AspS9I	GGNCC	2 cut(s)	243, 749
AsuHPI	GGTGA	4 cut(s)	44, 154, 427, 626
AvaII	GGWCC	1 cut(s)	749
AxyI	CCTNAGG	1 cut(s)	87
BaeGI	GKGCMC	1 cut(s)	494
BaeI	ACNNNNGTAYC	2 cut(s)	510, 543
BalI	TGGCCA	1 cut(s)	641
BanI	GGYRCC	2 cut(s)	518, 598
BanII	GRGCYC	1 cut(s)	121
BbsI	GAAGAC	1 cut(s)	535
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	5 cut(s)	53, 460, 679, 751, 760
BccI	CCATC	1 cut(s)	653
BcgI	CGANNNNNNTGC	2 cut(s)	455, 489
BciT130I	CCWGG	2 cut(s)	241, 638
BcoDI	GTCTC	2 cut(s)	198, 570
BfaI	CTAG	2 cut(s)	678, 821
BfmI	CTRYAG	1 cut(s)	112
BglI	GCCNNNNNGGC	1 cut(s)	815
BisI	GCNGC	7 cut(s)	42, 214, 217, 474, 693, 765, 774
BlpI	GCTNAGC	1 cut(s)	24
BlsI	GCNGC	7 cut(s)	43, 215, 218, 475, 694, 766, 775
Bme1390I	CCNGG	2 cut(s)	241, 638
Bme18I	GGWCC	1 cut(s)	749
BmgT120I	GGNCC	2 cut(s)	243, 749
BmiI	GGNNCC	4 cut(s)	460, 520, 600, 808
BmrFI	CCNGG	2 cut(s)	241, 638
BmrI	ACTGGG	1 cut(s)	376
BmsI	GCATC	1 cut(s)	243
BmuI	ACTGGG	1 cut(s)	376
BpiI	GAAGAC	1 cut(s)	535
Bpu1102I	GCTNAGC	1 cut(s)	24
BsaI	GGTCTC	1 cut(s)	198
BsaJI	CCNNGG	2 cut(s)	240, 356
BsaXI	ACNNNNNCTCC	2 cut(s)	681, 711
Bsc4I	CCNNNNNNNGG	4 cut(s)	388, 595, 656, 758
Bse118I	RCCGGY	1 cut(s)	284
Bse1I	ACTGG	4 cut(s)	382, 499, 661, 667
Bse21I	CCTNAGG	1 cut(s)	87
Bse3DI	GCAATG	2 cut(s)	768, 844
BseBI	CCWGG	2 cut(s)	241, 638
BseDI	CCNNGG	2 cut(s)	240, 356
BseGI	GGATG	2 cut(s)	645, 730
BseLI	CCNNNNNNNGG	4 cut(s)	388, 595, 656, 758
BseMI	GCAATG	2 cut(s)	768, 844
BseMII	CTCAG	5 cut(s)	15, 78, 120, 498, 788
BseNI	ACTGG	4 cut(s)	382, 499, 661, 667
BseRI	GAGGAG	3 cut(s)	54, 104, 458
BseSI	GKGCMC	1 cut(s)	494
BseXI	GCAGC	5 cut(s)	53, 460, 679, 751, 760
BseYI	CCCAGC	2 cut(s)	310, 476
BsgI	GTGCAG	1 cut(s)	262
BshFI	GGCC	3 cut(s)	245, 422, 641
BshNI	GGYRCC	2 cut(s)	518, 598
BsiHKAI	GWGCWC	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	285
BslFI	GGGAC	2 cut(s)	175, 572
BslI	CCNNNNNNNGG	4 cut(s)	388, 595, 656, 758
BsmAI	GTCTC	2 cut(s)	198, 570
BsmFI	GGGAC	2 cut(s)	175, 572
BsmI	GAATGC	1 cut(s)	225
BsnI	GGCC	3 cut(s)	245, 422, 641
Bso31I	GGTCTC	1 cut(s)	198
Bsp1286I	GDGCHC	2 cut(s)	121, 494
Bsp1407I	TGTACA	1 cut(s)	369
Bsp143I	GATC	5 cut(s)	82, 258, 510, 699, 735
Bsp1720I	GCTNAGC	1 cut(s)	24
BspACI	CCGC	5 cut(s)	213, 216, 282, 402, 453
BspANI	GGCC	3 cut(s)	245, 422, 641
BspCNI	CTCAG	5 cut(s)	16, 79, 121, 499, 789
BspLI	GGNNCC	4 cut(s)	460, 520, 600, 808
BspPI	GGATC	2 cut(s)	77, 743
BspT107I	GGYRCC	2 cut(s)	518, 598
BspTNI	GGTCTC	1 cut(s)	198
BsrDI	GCAATG	2 cut(s)	768, 844
BsrFI	RCCGGY	1 cut(s)	284
BsrGI	TGTACA	1 cut(s)	369
BsrI	ACTGG	4 cut(s)	382, 499, 661, 667
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	2 cut(s)	240, 356
BssMI	GATC	5 cut(s)	82, 258, 510, 699, 735
Bst2UI	CCWGG	2 cut(s)	241, 638
Bst4CI	ACNGT	3 cut(s)	166, 175, 541
Bst6I	CTCTTC	1 cut(s)	155
BstAUI	TGTACA	1 cut(s)	369
BstC8I	GCNNGC	1 cut(s)	340
BstDEI	CTNAG	6 cut(s)	24, 87, 129, 507, 797, 843
BstF5I	GGATG	2 cut(s)	645, 730
BstKTI	GATC	5 cut(s)	85, 261, 513, 702, 738
BstMAI	GTCTC	2 cut(s)	198, 570
BstMBI	GATC	5 cut(s)	82, 258, 510, 699, 735
BstMWI	GCNNNNNNNGC	6 cut(s)	125, 222, 231, 770, 773, 815
BstNI	CCWGG	2 cut(s)	241, 638
BstSCI	CCNGG	2 cut(s)	239, 636
BstSFI	CTRYAG	1 cut(s)	112
BstSLI	GKGCMC	1 cut(s)	494
BstV1I	GCAGC	5 cut(s)	53, 460, 679, 751, 760
BstV2I	GAAGAC	1 cut(s)	535
BstX2I	RGATCY	1 cut(s)	735
BstXI	CCANNNNNNTGG	2 cut(s)	200, 469
BstYI	RGATCY	1 cut(s)	735
Bsu36I	CCTNAGG	1 cut(s)	87
BsuRI	GGCC	3 cut(s)	245, 422, 641
BtgZI	GCGATG	1 cut(s)	220
BtsCI	GGATG	2 cut(s)	645, 730
BtsI	GCAGTG	2 cut(s)	205, 350
BtsIMutI	CAGTG	6 cut(s)	205, 350, 492, 537, 552, 654
Cac8I	GCNNGC	1 cut(s)	340
Cfr10I	RCCGGY	1 cut(s)	284
Cfr13I	GGNCC	2 cut(s)	243, 749
Csp6I	GTAC	4 cut(s)	370, 481, 519, 781
CviAII	CATG	4 cut(s)	29, 56, 256, 584
CviQI	GTAC	4 cut(s)	370, 481, 519, 781
DdeI	CTNAG	6 cut(s)	24, 87, 129, 507, 797, 843
DpnI	GATC	5 cut(s)	84, 260, 512, 701, 737
DpnII	GATC	5 cut(s)	82, 258, 510, 699, 735
DrdI	GACNNNNNNGTC	2 cut(s)	103, 584
DseDI	GACNNNNNNGTC	2 cut(s)	103, 584
EaeI	YGGCCR	1 cut(s)	639
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Ecl136II	GAGCTC	1 cut(s)	119
Eco147I	AGGCCT	1 cut(s)	422
Eco24I	GRGCYC	1 cut(s)	121
Eco31I	GGTCTC	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	749
Eco53kI	GAGCTC	1 cut(s)	119
Eco81I	CCTNAGG	1 cut(s)	87
EcoICRI	GAGCTC	1 cut(s)	119
EcoRII	CCWGG	2 cut(s)	239, 636
EcoT38I	GRGCYC	1 cut(s)	121
FaeI	CATG	4 cut(s)	32, 59, 259, 587
FaiI	YATR	7 cut(s)	30, 57, 257, 305, 436, 450, 585
FaqI	GGGAC	2 cut(s)	175, 572
FatI	CATG	4 cut(s)	28, 55, 255, 583
FblI	GTMKAC	1 cut(s)	534
Fnu4HI	GCNGC	7 cut(s)	42, 214, 217, 474, 693, 765, 774
FokI	GGATG	2 cut(s)	632, 737
FriOI	GRGCYC	1 cut(s)	121
Fsp4HI	GCNGC	7 cut(s)	42, 214, 217, 474, 693, 765, 774
FspBI	CTAG	2 cut(s)	678, 821
GluI	GCNGC	7 cut(s)	42, 214, 217, 474, 693, 765, 774
GsaI	CCCAGC	2 cut(s)	314, 480
HaeIII	GGCC	3 cut(s)	245, 422, 641
HapII	CCGG	1 cut(s)	285
Hin1II	CATG	4 cut(s)	32, 59, 259, 587
HindIII	AAGCTT	1 cut(s)	717
HinfI	GANTC	1 cut(s)	578
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	4 cut(s)	44, 154, 427, 626
Hpy166II	GTNNAC	4 cut(s)	274, 299, 535, 634
Hpy188I	TCNGA	1 cut(s)	798
Hpy188III	TCNNGA	2 cut(s)	86, 832
Hpy8I	GTNNAC	4 cut(s)	274, 299, 535, 634
HpyAV	CCTTC	4 cut(s)	85, 155, 412, 433
HpyCH4III	ACNGT	3 cut(s)	166, 175, 541
HpyCH4V	TGCA	3 cut(s)	41, 279, 395
HpyF10VI	GCNNNNNNNGC	6 cut(s)	125, 222, 231, 770, 773, 815
HpyF3I	CTNAG	6 cut(s)	24, 87, 129, 507, 797, 843
Hsp92II	CATG	4 cut(s)	32, 59, 259, 587
KpnI	GGTACC	1 cut(s)	522
Kzo9I	GATC	5 cut(s)	82, 258, 510, 699, 735
LmnI	GCTCC	8 cut(s)	20, 91, 458, 503, 689, 761, 806, 834
Lsp1109I	GCAGC	5 cut(s)	53, 460, 679, 751, 760
LweI	GCATC	1 cut(s)	243
MaeI	CTAG	2 cut(s)	678, 821
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	5 cut(s)	84, 260, 512, 701, 737
MboI	GATC	5 cut(s)	82, 258, 510, 699, 735
MboII	GAAGA	3 cut(s)	142, 535, 730
MflI	RGATCY	1 cut(s)	735
MhlI	GDGCHC	2 cut(s)	121, 494
MlsI	TGGCCA	1 cut(s)	641
MluNI	TGGCCA	1 cut(s)	641
MlyI	GAGTC	1 cut(s)	572
MmeI	TCCRAC	1 cut(s)	92
MnlI	CCTC	6 cut(s)	10, 72, 75, 82, 351, 436
Mox20I	TGGCCA	1 cut(s)	641
MroXI	GAANNNNTTC	1 cut(s)	422
MscI	TGGCCA	1 cut(s)	641
MseI	TTAA	1 cut(s)	813
Msp20I	TGGCCA	1 cut(s)	641
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	2 cut(s)	241, 638
Mva1269I	GAATGC	1 cut(s)	225
MvaI	CCWGG	2 cut(s)	241, 638
MwoI	GCNNNNNNNGC	6 cut(s)	125, 222, 231, 770, 773, 815
NdeII	GATC	5 cut(s)	82, 258, 510, 699, 735
NlaIII	CATG	4 cut(s)	32, 59, 259, 587
NlaIV	GGNNCC	4 cut(s)	460, 520, 600, 808
NmeAIII	GCCGAG	1 cut(s)	381
NmuCI	GTSAC	1 cut(s)	316
PceI	AGGCCT	1 cut(s)	422
PctI	GAATGC	1 cut(s)	225
PdmI	GAANNNNTTC	1 cut(s)	422
PflMI	CCANNNNNTGG	3 cut(s)	388, 656, 758
PkrI	GCNGC	7 cut(s)	43, 215, 218, 475, 694, 766, 775
PleI	GAGTC	1 cut(s)	572
PpsI	GAGTC	1 cut(s)	572
Psp124BI	GAGCTC	1 cut(s)	121
Psp6I	CCWGG	2 cut(s)	239, 636
PspFI	CCCAGC	2 cut(s)	310, 476
PspGI	CCWGG	2 cut(s)	239, 636
PspN4I	GGNNCC	4 cut(s)	460, 520, 600, 808
PspPI	GGNCC	2 cut(s)	243, 749
PsuI	RGATCY	1 cut(s)	735
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	4 cut(s)	371, 482, 520, 782
RsaNI	GTAC	4 cut(s)	370, 481, 519, 781
SacI	GAGCTC	1 cut(s)	121
SaqAI	TTAA	1 cut(s)	813
SatI	GCNGC	7 cut(s)	42, 214, 217, 474, 693, 765, 774
Sau3AI	GATC	5 cut(s)	82, 258, 510, 699, 735
Sau96I	GGNCC	2 cut(s)	243, 749
SchI	GAGTC	1 cut(s)	572
ScrFI	CCNGG	2 cut(s)	241, 638
SduI	GDGCHC	2 cut(s)	121, 494
SfaNI	GCATC	1 cut(s)	243
SfcI	CTRYAG	1 cut(s)	112
SinI	GGWCC	1 cut(s)	749
SseBI	AGGCCT	1 cut(s)	422
SsiI	CCGC	5 cut(s)	213, 216, 282, 402, 453
SspMI	CTAG	2 cut(s)	678, 821
SstI	GAGCTC	1 cut(s)	121
StuI	AGGCCT	1 cut(s)	422
StyD4I	CCNGG	2 cut(s)	239, 636
TaaI	ACNGT	3 cut(s)	166, 175, 541
TatI	WGTACW	1 cut(s)	369
TauI	GCSGC	2 cut(s)	216, 219
Tru1I	TTAA	1 cut(s)	813
Tru9I	TTAA	1 cut(s)	813
TscAI	CASTG	6 cut(s)	205, 357, 499, 544, 559, 661
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	5 cut(s)	41, 473, 692, 764, 773
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	1 cut(s)	616
TspRI	CASTG	6 cut(s)	205, 357, 499, 544, 559, 661
Van91I	CCANNNNNTGG	3 cut(s)	388, 656, 758
VpaK11BI	GGWCC	1 cut(s)	749
XmiI	GTMKAC	1 cut(s)	534
XmnI	GAANNNNTTC	1 cut(s)	422
XspI	CTAG	2 cut(s)	678, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.